Wall clock time and date at job start Wed Apr 1 2020 00:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46924 * 2 1 4 4 C 1.53006 * 109.47177 * 119.99800 * 2 1 3 5 5 H 1.08999 * 109.47266 * 181.02954 * 4 2 1 6 6 C 1.52995 * 109.47247 * 301.02919 * 4 2 1 7 7 N 1.46497 * 109.47278 * 174.99974 * 6 4 2 8 8 C 1.34782 * 120.00218 * 180.02562 * 7 6 4 9 9 O 1.21706 * 119.99644 * 359.97438 * 8 7 6 10 10 C 1.46576 * 120.00274 * 179.72545 * 8 7 6 11 11 C 1.36642 * 125.46156 * 179.97438 * 10 8 7 12 12 C 1.37469 * 113.30079 * 179.97438 * 11 10 8 13 13 C 1.33822 * 115.09818 * 0.02562 * 12 11 10 14 14 S 1.70612 * 110.95494 * 359.74668 * 13 12 11 15 15 N 1.46907 * 109.46955 * 61.02819 * 4 2 1 16 16 C 1.46896 * 110.99763 * 86.41011 * 15 4 2 17 17 C 1.50695 * 109.47126 * 185.24294 * 16 15 4 18 18 O 1.21297 * 120.00104 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00437 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00342 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99840 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00037 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00008 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99847 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47237 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47395 * 119.99992 * 24 22 20 27 27 H 1.48500 * 109.46953 * 239.99948 * 24 22 20 28 28 H 1.09009 * 109.46721 * 300.00048 * 1 2 3 29 29 H 1.08995 * 109.46832 * 59.99976 * 1 2 3 30 30 H 1.09000 * 109.46804 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47335 * 239.99512 * 2 1 3 32 32 H 1.09003 * 109.46918 * 174.51400 * 3 2 1 33 33 H 1.09000 * 109.47042 * 294.50486 * 3 2 1 34 34 H 1.08996 * 109.47283 * 54.51792 * 3 2 1 35 35 H 1.09009 * 109.47038 * 54.99651 * 6 4 2 36 36 H 1.09003 * 109.47315 * 295.00340 * 6 4 2 37 37 H 0.97004 * 120.00086 * 0.02562 * 7 6 4 38 38 H 1.07998 * 123.35267 * 359.95746 * 11 10 8 39 39 H 1.08000 * 122.45173 * 180.02562 * 12 11 10 40 40 H 1.08003 * 124.51827 * 180.02562 * 13 12 11 41 41 H 1.00899 * 110.99548 * 210.36644 * 15 4 2 42 42 H 1.09003 * 109.47499 * 305.24446 * 16 15 4 43 43 H 1.09003 * 109.47187 * 65.24490 * 16 15 4 44 44 H 0.97008 * 119.99805 * 0.02562 * 19 17 16 45 45 H 0.96996 * 120.00026 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1299 -0.7053 1.2586 6 6 1.5091 -0.0151 2.4984 7 7 1.8976 -0.7731 3.6903 8 6 1.5368 -0.3371 4.9135 9 8 0.8885 0.6865 5.0279 10 6 1.9204 -1.0987 6.1057 11 6 1.6161 -0.7608 7.3942 12 6 2.1005 -1.6544 8.3197 13 6 2.7788 -2.6888 7.8090 14 16 2.8404 -2.5972 6.1064 15 7 1.5708 -2.1133 1.2370 16 6 2.4915 -2.9725 0.4808 17 6 1.9147 -4.3610 0.3804 18 8 0.8418 -4.6103 0.8884 19 7 2.5904 -5.3258 -0.2747 20 6 2.0654 -6.5889 -0.3665 21 1 1.1105 -6.8110 0.0866 22 6 2.7623 -7.5837 -1.0414 23 7 3.9244 -7.3135 -1.5923 24 14 2.0466 -9.3045 -1.1670 25 1 0.7366 -9.3480 -0.4688 26 1 1.8580 -9.6591 -2.5966 27 1 2.9763 -10.2746 -0.5349 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1256 1.4441 0.0983 33 1 1.7592 1.9271 -0.9351 34 1 1.5987 1.9839 0.8368 35 1 0.4220 0.0475 2.4459 36 1 1.9285 0.9895 2.5539 37 1 2.4146 -1.5888 3.5991 38 1 1.0514 0.1208 7.6592 39 1 1.9450 -1.5308 9.3812 40 1 3.2236 -3.4787 8.3960 41 1 1.4416 -2.4596 2.1758 42 1 2.6308 -2.5637 -0.5201 43 1 3.4527 -3.0145 0.9931 44 1 3.4482 -5.1264 -0.6814 45 1 4.4111 -8.0080 -2.0632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698956864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:24 Heat of formation + Delta-G solvation = -42.900023 kcal Electronic energy + Delta-G solvation = -26872.495252 eV Core-core repulsion = 23016.478052 eV Total energy + Delta-G solvation = -3856.017199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.11851 -38.72927 -37.86506 -37.36918 -34.39241 -34.08907 -33.20121 -31.22884 -30.43646 -28.52659 -27.12096 -26.27069 -25.06990 -23.97162 -23.26329 -21.49853 -19.93712 -19.29592 -19.16010 -18.51665 -17.90238 -16.77654 -16.19699 -15.99821 -15.79995 -15.41918 -15.19665 -14.72832 -14.49598 -14.27594 -13.88566 -13.82280 -13.62180 -13.40364 -13.25760 -13.01367 -12.87847 -12.54221 -12.42293 -12.15027 -11.96302 -11.80513 -11.58465 -11.48710 -11.21595 -11.10262 -10.93948 -10.80983 -10.42438 -10.35929 -10.24330 -10.23161 -9.53674 -9.36873 -9.07242 -8.85747 -8.50422 -8.10965 -7.97994 -6.43874 -3.84533 0.25851 1.21654 1.62608 2.14546 2.88908 3.03330 3.14651 3.25597 3.32727 3.88102 4.00002 4.24715 4.48122 4.63041 4.74228 4.83884 4.99729 5.03208 5.15382 5.19888 5.21913 5.25136 5.30654 5.49834 5.58333 5.64833 5.67850 5.74956 5.81719 5.88330 5.90206 5.95590 6.01450 6.04067 6.10415 6.22845 6.23989 6.40195 6.62404 7.11052 7.17767 7.51931 7.53607 7.93204 8.04480 8.59228 9.16299 9.52299 10.03772 10.73902 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008849 B = 0.003171 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3163.522252 B = 8827.059622 C =11409.092018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.079 3.921 5 H 0.050 0.950 6 C 0.114 3.886 7 N -0.727 5.727 8 C 0.594 3.406 9 O -0.530 6.530 10 C -0.271 4.271 11 C -0.056 4.056 12 C -0.153 4.153 13 C -0.229 4.229 14 S 0.213 5.787 15 N -0.660 5.660 16 C 0.049 3.951 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.396 0.604 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.345 0.655 42 H 0.088 0.912 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 14.579 12.656 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.210 4.210 4 C -0.031 4.031 5 H 0.068 0.932 6 C -0.009 4.009 7 N -0.379 5.379 8 C 0.380 3.620 9 O -0.408 6.408 10 C -0.391 4.391 11 C -0.090 4.090 12 C -0.184 4.184 13 C -0.367 4.367 14 S 0.480 5.520 15 N -0.294 5.294 16 C -0.084 4.084 17 C 0.226 3.774 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.755 3.245 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.231 0.769 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.166 0.834 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.479 14.178 11.299 18.190 hybrid contribution 0.780 -0.538 1.401 1.692 sum 2.259 13.640 12.700 18.774 Atomic orbital electron populations 1.21811 0.94311 1.03425 1.00539 1.21028 0.97152 0.94785 0.97028 1.21938 1.00783 0.96242 1.02002 1.21856 0.97376 0.89518 0.94379 0.93175 1.21812 1.01972 0.95051 0.82028 1.45943 1.57141 1.28718 1.06139 1.16887 0.79135 0.84126 0.81804 1.90826 1.39358 1.24368 1.86270 1.24671 1.13250 1.03225 0.98003 1.20788 0.98039 1.00070 0.90061 1.20049 1.01670 0.95126 1.01539 1.25386 1.06853 1.04520 0.99975 1.83335 1.48735 1.17895 1.01989 1.60010 1.48720 0.99810 1.20872 1.21765 0.93386 0.93608 0.99640 1.19773 0.87165 0.85781 0.84660 1.90539 1.22573 1.82143 1.51076 1.41870 1.20725 1.09281 1.48226 1.19748 1.05379 0.85122 1.32506 0.87874 1.25253 0.95743 1.00265 0.96674 1.69617 1.13644 1.34803 1.36265 0.85817 0.79093 0.81562 0.77987 1.19205 1.20747 1.20787 0.93093 0.93518 0.90534 0.90565 0.92856 0.92427 0.92478 0.89502 0.90348 0.76902 0.82923 0.83690 0.81268 0.83364 0.89363 0.93891 0.77521 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.68 37.16 0.32 -1.40 16 2 C -0.08 -0.89 2.84 -90.62 -0.26 -1.15 16 3 C -0.15 -1.37 8.71 37.16 0.32 -1.05 16 4 C 0.08 0.92 2.01 -67.71 -0.14 0.78 16 5 H 0.05 0.54 7.84 -51.93 -0.41 0.13 16 6 C 0.11 1.32 4.60 -4.05 -0.02 1.30 16 7 N -0.73 -8.61 4.97 -61.65 -0.31 -8.92 16 8 C 0.59 7.96 7.78 -12.90 -0.10 7.86 16 9 O -0.53 -8.57 16.84 5.18 0.09 -8.49 16 10 C -0.27 -3.13 6.45 -36.80 -0.24 -3.37 16 11 C -0.06 -0.58 10.01 -40.44 -0.40 -0.98 16 12 C -0.15 -1.29 10.15 -41.41 -0.42 -1.71 16 13 C -0.23 -1.90 10.92 29.18 0.32 -1.58 16 14 S 0.21 2.05 22.16 -107.50 -2.38 -0.33 16 15 N -0.66 -9.84 5.11 -107.99 -0.55 -10.39 16 16 C 0.05 0.80 5.93 -4.98 -0.03 0.77 16 17 C 0.44 9.98 7.83 -10.99 -0.09 9.90 16 18 O -0.58 -15.27 15.89 5.54 0.09 -15.18 16 19 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 20 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 24 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.05 0.58 6.30 -51.92 -0.33 0.25 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.12 7.63 -51.93 -0.40 0.73 16 31 H 0.08 0.91 7.46 -51.93 -0.39 0.52 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 6.87 -51.93 -0.36 0.14 16 35 H 0.09 1.12 6.15 -51.92 -0.32 0.80 16 36 H 0.08 0.85 6.86 -51.93 -0.36 0.50 16 37 H 0.40 4.33 6.51 -40.82 -0.27 4.06 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.35 5.34 6.61 -39.29 -0.26 5.08 16 42 H 0.09 1.35 7.42 -51.93 -0.39 0.96 16 43 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 45 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -32.27 385.03 -8.84 -41.11 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -6.25 Total: 16.38 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.97 Total: 1.57 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.19 Total: -56.60 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.18 Total: -23.67 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.38 Total: -0.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.27 -8.84 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698956864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.795 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds