Wall clock time and date at job start Tue Mar 31 2020 22:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47354 * 2 1 4 4 C 1.50700 * 109.47542 * 120.00115 * 2 1 3 5 5 N 1.30945 * 122.90067 * 308.42359 * 4 2 1 6 6 C 1.29425 * 117.36581 * 179.97438 * 5 4 2 7 7 S 1.70962 * 110.38747 * 359.72064 * 6 5 4 8 8 C 1.35652 * 122.90654 * 128.41427 * 4 2 1 9 9 C 1.46682 * 126.13104 * 0.02562 * 8 4 2 10 10 O 1.21681 * 120.00048 * 5.99691 * 9 8 4 11 11 N 1.34784 * 119.99814 * 185.99319 * 9 8 4 12 12 C 1.46499 * 119.99593 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47056 * 180.02562 * 12 11 9 14 14 O 1.42902 * 110.88199 * 303.87512 * 13 12 11 15 15 C 1.55151 * 111.00468 * 179.97438 * 13 12 11 16 16 C 1.54322 * 102.94224 * 206.38143 * 15 13 12 17 17 N 1.47022 * 107.27128 * 22.19429 * 16 15 13 18 18 C 1.36932 * 125.65168 * 181.02197 * 17 16 15 19 19 H 1.08000 * 120.00610 * 172.25349 * 18 17 16 20 20 C 1.38817 * 119.99897 * 352.25565 * 18 17 16 21 21 N 1.31621 * 120.00012 * 168.79569 * 20 18 17 22 22 Si 1.86803 * 119.99978 * 348.79413 * 20 18 17 23 23 H 1.48502 * 109.46921 * 65.73486 * 22 20 18 24 24 H 1.48490 * 109.47087 * 185.73964 * 22 20 18 25 25 H 1.48502 * 109.46897 * 305.73860 * 22 20 18 26 26 C 1.47424 * 108.70270 * 1.28521 * 17 16 15 27 27 H 1.09000 * 109.46725 * 299.99968 * 1 2 3 28 28 H 1.09003 * 109.47281 * 59.99525 * 1 2 3 29 29 H 1.08994 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47246 * 239.99972 * 2 1 3 31 31 H 1.09005 * 109.47037 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46702 * 300.00061 * 3 2 1 33 33 H 1.09001 * 109.46967 * 59.99801 * 3 2 1 34 34 H 1.07999 * 124.81063 * 180.02562 * 6 5 4 35 35 H 0.96994 * 120.00064 * 359.97438 * 11 9 8 36 36 H 1.08994 * 109.47560 * 59.99793 * 12 11 9 37 37 H 1.09004 * 109.47208 * 299.99320 * 12 11 9 38 38 H 0.96704 * 114.00086 * 56.12108 * 14 13 12 39 39 H 1.09006 * 110.72244 * 88.02007 * 15 13 12 40 40 H 1.08995 * 110.87516 * 324.81740 * 15 13 12 41 41 H 1.09005 * 109.88511 * 262.77314 * 16 15 13 42 42 H 1.08997 * 109.88343 * 141.61037 * 16 15 13 43 43 H 0.96998 * 120.00188 * 5.08626 * 21 20 18 44 44 H 1.09001 * 110.36615 * 94.48114 * 26 17 16 45 45 H 1.08993 * 110.36969 * 216.80716 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.6254 -0.4137 2.4391 6 6 2.1276 -1.0931 3.4195 7 16 3.2357 -2.2552 2.8328 8 6 2.9452 -1.7126 1.1816 9 6 3.5731 -2.2525 -0.0292 10 8 3.3691 -1.7257 -1.1069 11 7 4.3760 -3.3320 0.0521 12 6 5.0034 -3.8708 -1.1571 13 6 5.8569 -5.0866 -0.7904 14 8 6.8245 -4.7481 0.2052 15 6 6.5389 -5.6870 -2.0480 16 6 6.7411 -7.1665 -1.6585 17 7 5.7750 -7.4734 -0.5935 18 6 5.6438 -8.6793 0.0418 19 1 4.9903 -8.7711 0.8967 20 6 6.3508 -9.7839 -0.4130 21 7 6.4017 -10.8786 0.3161 22 14 7.2300 -9.7169 -2.0599 23 1 8.3322 -8.7240 -1.9925 24 1 7.7883 -11.0556 -2.3777 25 1 6.2681 -9.3177 -3.1185 26 6 4.9667 -6.2696 -0.3273 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.8781 -0.9498 4.4605 35 1 4.5389 -3.7517 0.9112 36 1 5.6348 -3.1066 -1.6103 37 1 4.2305 -4.1702 -1.8650 38 1 6.4449 -4.3693 1.0099 39 1 7.4976 -5.2030 -2.2350 40 1 5.8897 -5.6029 -2.9195 41 1 7.7567 -7.3182 -1.2927 42 1 6.5565 -7.8057 -2.5218 43 1 5.8858 -10.9402 1.1351 44 1 4.0414 -6.2991 -0.9028 45 1 4.7496 -6.1863 0.7375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699904785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:36 Heat of formation + Delta-G solvation = -32.138771 kcal Electronic energy + Delta-G solvation = -27547.063350 eV Core-core repulsion = 23691.512794 eV Total energy + Delta-G solvation = -3855.550556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -41.71837 -40.83256 -39.79198 -37.09291 -35.92484 -35.34012 -34.39497 -32.14277 -31.32047 -30.11996 -28.06080 -27.80737 -26.66658 -25.03870 -23.37473 -22.85987 -22.43264 -21.57894 -20.75927 -19.59384 -18.97222 -18.57772 -17.63451 -17.19872 -16.97699 -16.68712 -16.28693 -16.00615 -15.70454 -15.45588 -15.39761 -15.22657 -15.17378 -14.75247 -14.62985 -14.49567 -13.83580 -13.60193 -13.45112 -13.36227 -13.13567 -13.02369 -12.96592 -12.89953 -12.24973 -12.14520 -11.99334 -11.90096 -11.72137 -11.44326 -11.25260 -11.13941 -10.90931 -10.77937 -10.70320 -10.64904 -10.31246 -9.91027 -9.09961 -8.62243 -5.47525 -0.83167 0.14317 0.51530 1.33942 1.39528 1.49403 1.70489 1.83057 2.00244 2.54068 3.02405 3.07761 3.11857 3.24250 3.44056 3.61606 3.65466 3.76215 3.86221 3.99715 4.21798 4.27161 4.29434 4.35120 4.49632 4.54283 4.65480 4.68814 4.77697 4.78947 4.82489 4.84748 4.92761 4.95228 5.00462 5.09797 5.16493 5.19446 5.29828 5.48009 5.49465 6.08106 6.13646 6.54783 6.64055 6.81619 6.90093 7.43100 8.06816 8.88839 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.002723 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.208175 B =10279.398354 C =10917.141249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.128 4.128 4 C 0.151 3.849 5 N -0.493 5.493 6 C 0.050 3.950 7 S 0.201 5.799 8 C -0.329 4.329 9 C 0.601 3.399 10 O -0.546 6.546 11 N -0.715 5.715 12 C 0.117 3.883 13 C 0.119 3.881 14 O -0.548 6.548 15 C -0.105 4.105 16 C 0.087 3.913 17 N -0.629 5.629 18 C -0.307 4.307 19 H 0.047 0.953 20 C -0.087 4.087 21 N -0.969 5.969 22 Si 1.118 2.882 23 H -0.255 1.255 24 H -0.315 1.315 25 H -0.276 1.276 26 C 0.111 3.889 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.105 0.895 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.245 0.755 35 H 0.403 0.597 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.381 0.619 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.246 0.754 44 H 0.040 0.960 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.180 26.426 2.925 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 C -0.186 4.186 4 C 0.012 3.988 5 N -0.206 5.206 6 C -0.245 4.245 7 S 0.457 5.543 8 C -0.453 4.453 9 C 0.388 3.612 10 O -0.427 6.427 11 N -0.368 5.368 12 C -0.007 4.007 13 C 0.077 3.923 14 O -0.355 6.355 15 C -0.143 4.143 16 C -0.037 4.037 17 N -0.356 5.356 18 C -0.435 4.435 19 H 0.065 0.935 20 C -0.279 4.279 21 N -0.614 5.614 22 Si 0.946 3.054 23 H -0.180 1.180 24 H -0.245 1.245 25 H -0.204 1.204 26 C -0.015 4.015 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.261 0.739 35 H 0.239 0.761 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.230 0.770 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.673 25.266 1.459 26.173 hybrid contribution -1.871 0.477 1.835 2.663 sum -8.544 25.742 3.294 27.322 Atomic orbital electron populations 1.21705 0.92950 1.01467 1.02879 1.20357 0.97025 0.96785 0.93176 1.21657 1.00304 0.93856 1.02765 1.20846 0.91698 0.92302 0.93968 1.66101 1.27302 1.28537 0.98671 1.29483 0.95968 0.94207 1.04805 1.83951 1.40304 1.34559 0.95477 1.25429 1.11980 1.09075 0.98804 1.16791 0.77968 0.79605 0.86878 1.90719 1.62239 1.60378 1.29326 1.45755 1.48823 1.30405 1.11769 1.21896 0.96622 0.94992 0.87194 1.22502 0.88428 0.91266 0.90139 1.86612 1.35120 1.84589 1.29172 1.22608 1.03289 0.92544 0.95823 1.22269 0.93620 0.96793 0.91023 1.44722 1.38844 1.08833 1.43199 1.20070 1.26835 0.87150 1.09478 0.93462 1.27145 1.01570 0.91891 1.07303 1.71022 1.43005 1.30876 1.16498 0.83299 0.76477 0.73758 0.71854 1.18034 1.24475 1.20357 1.22437 0.93682 0.86468 0.98906 0.91891 0.90748 0.93847 0.87760 0.93767 0.90634 0.92172 0.73926 0.76066 0.88999 0.89525 0.77018 0.87815 0.86988 0.94593 0.94520 0.94503 0.94275 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.07 71.98 0.65 -1.70 16 2 C -0.05 -1.09 3.08 -11.54 -0.04 -1.13 16 3 C -0.13 -2.28 9.18 71.99 0.66 -1.61 16 4 C 0.15 3.19 5.42 42.09 0.23 3.42 16 5 N -0.49 -9.07 10.22 -190.40 -1.95 -11.02 16 6 C 0.05 0.60 12.22 130.60 1.60 2.20 16 7 S 0.20 2.67 22.37 -56.49 -1.26 1.40 16 8 C -0.33 -6.79 6.48 23.88 0.15 -6.64 16 9 C 0.60 14.26 7.77 86.45 0.67 14.94 16 10 O -0.55 -15.71 14.05 -4.29 -0.06 -15.77 16 11 N -0.72 -14.80 5.20 -467.07 -2.43 -17.23 16 12 C 0.12 2.60 4.89 86.38 0.42 3.02 16 13 C 0.12 3.28 0.97 -9.32 -0.01 3.27 16 14 O -0.55 -15.45 13.21 -148.98 -1.97 -17.41 16 15 C -0.10 -3.02 6.15 31.78 0.20 -2.83 16 16 C 0.09 3.57 4.64 86.73 0.40 3.97 16 17 N -0.63 -29.76 3.35 -691.56 -2.32 -32.08 16 18 C -0.31 -17.79 10.60 84.04 0.89 -16.90 16 19 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 20 C -0.09 -5.26 5.50 84.86 0.47 -4.79 16 21 N -0.97 -63.17 13.70 21.65 0.30 -62.88 16 22 Si 1.12 54.34 24.51 68.60 1.68 56.02 16 23 H -0.25 -11.10 5.48 99.48 0.54 -10.55 16 24 H -0.32 -15.86 7.11 99.48 0.71 -15.15 16 25 H -0.28 -12.30 6.44 99.48 0.64 -11.66 16 26 C 0.11 3.98 6.23 86.93 0.54 4.52 16 27 H 0.06 1.10 8.03 -2.39 -0.02 1.08 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 2.58 5.10 -2.39 -0.01 2.57 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.24 0.79 8.06 -2.91 -0.02 0.76 16 35 H 0.40 7.13 6.48 -92.71 -0.60 6.53 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.95 8.07 -2.38 -0.02 1.93 16 38 H 0.38 7.83 7.69 -74.05 -0.57 7.26 16 39 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 40 H 0.11 2.62 8.04 -2.39 -0.02 2.61 16 41 H 0.04 1.61 6.18 -2.38 -0.01 1.59 16 42 H 0.04 1.56 3.91 -2.39 -0.01 1.55 16 43 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 44 H 0.04 1.38 7.99 -2.39 -0.02 1.36 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -78.74 369.29 -1.57 -80.31 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.40 Total: 18.91 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.84 Total: -0.26 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -6.40 Total: -123.21 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -2.03 Total: -33.18 kcal Atomic # 14 Polarization: 54.34 SS G_CDS: 1.68 Total: 56.02 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -1.26 Total: 1.40 kcal Total: -78.74 -1.57 -80.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699904785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.170 kcal (2) G-P(sol) polarization free energy of solvation -78.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds