Wall clock time and date at job start Wed Apr 1 2020 00:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.53003 * 109.47030 * 120.00162 * 2 1 3 5 5 H 1.09003 * 109.46649 * 299.99867 * 4 2 1 6 6 C 1.53004 * 109.46861 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.46711 * 184.99496 * 6 4 2 8 8 C 1.34779 * 119.99499 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00582 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99631 * 180.02562 * 8 7 6 11 11 S 1.80998 * 109.47135 * 180.02562 * 10 8 7 12 12 C 1.76198 * 100.00131 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99782 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99977 * 180.02562 * 12 11 10 15 15 N 1.31638 * 119.99736 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00256 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47131 * 90.00370 * 16 14 12 18 18 H 1.48494 * 109.47440 * 210.00393 * 16 14 12 19 19 H 1.48502 * 109.47214 * 330.00863 * 16 14 12 20 20 N 1.46493 * 109.47312 * 59.99886 * 4 2 1 21 21 C 1.34776 * 120.00435 * 275.00075 * 20 4 2 22 22 O 1.21700 * 119.99354 * 0.02562 * 21 20 4 23 23 C 1.46679 * 120.00261 * 179.97438 * 21 20 4 24 24 C 1.37867 * 126.22973 * 180.02562 * 23 21 20 25 25 C 1.39843 * 107.08397 * 180.02562 * 24 23 21 26 26 C 1.35457 * 107.86071 * 359.97438 * 25 24 23 27 27 N 1.35533 * 108.87474 * 0.23019 * 26 25 24 28 28 H 0.96993 * 125.68142 * 179.75463 * 27 26 25 29 29 H 1.08996 * 109.47291 * 299.99991 * 1 2 3 30 30 H 1.09007 * 109.46949 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47146 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47296 * 239.99633 * 2 1 3 33 33 H 1.09003 * 109.47711 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47203 * 299.99828 * 3 2 1 35 35 H 1.09003 * 109.47299 * 59.99634 * 3 2 1 36 36 H 1.08996 * 109.47130 * 304.99559 * 6 4 2 37 37 H 1.09003 * 109.46887 * 65.00318 * 6 4 2 38 38 H 0.96998 * 120.00398 * 0.02562 * 7 6 4 39 39 H 1.09000 * 109.46999 * 300.00328 * 10 8 7 40 40 H 1.09000 * 109.47438 * 59.99747 * 10 8 7 41 41 H 0.96996 * 119.99656 * 179.97438 * 15 14 12 42 42 H 0.97005 * 119.99626 * 94.99852 * 20 4 2 43 43 H 1.08004 * 126.46139 * 0.02562 * 24 23 21 44 44 H 1.07994 * 126.06745 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.55847 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 7 4.0583 -1.5129 2.3810 8 6 5.3834 -1.6541 2.5827 9 8 6.1715 -1.1250 1.8278 10 6 5.8858 -2.4695 3.7463 11 16 7.6958 -2.4687 3.7468 12 6 8.0018 -3.4652 5.1673 13 1 7.1745 -3.8640 5.7356 14 6 9.3061 -3.7369 5.5565 15 7 9.5347 -4.4810 6.6181 16 14 10.7370 -3.0467 4.5741 17 1 11.1152 -1.7174 5.1176 18 1 11.8961 -3.9696 4.6726 19 1 10.3373 -2.9040 3.1510 20 7 1.5516 -2.1024 1.2493 21 6 0.3297 -2.3853 1.7425 22 8 -0.3682 -1.4931 2.1875 23 6 -0.1595 -3.7681 1.7420 24 6 -1.3816 -4.2003 2.2115 25 6 -1.4299 -5.5844 2.0178 26 6 -0.2626 -5.9649 1.4456 27 7 0.5200 -4.8712 1.2770 28 1 1.4100 -4.8664 0.8915 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9336 -1.1548 0.3182 37 1 3.9329 0.3032 1.3394 38 1 3.4280 -1.9364 2.9846 39 1 5.5223 -2.0356 4.6778 40 1 5.5225 -3.4932 3.6564 41 1 10.4462 -4.6711 6.8899 42 1 2.1078 -2.8135 0.8942 43 1 -2.1557 -3.5858 2.6468 44 1 -2.2520 -6.2345 2.2782 45 1 0.0029 -6.9755 1.1724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704836527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:44 Heat of formation + Delta-G solvation = -38.516450 kcal Electronic energy + Delta-G solvation = -26714.936702 eV Core-core repulsion = 22859.109589 eV Total energy + Delta-G solvation = -3855.827113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65348 -40.20924 -39.14762 -37.15643 -34.36477 -33.70713 -32.48311 -31.38431 -30.42887 -29.58894 -28.05619 -27.06344 -25.66196 -23.85686 -22.71586 -21.06984 -20.74310 -20.46273 -20.26176 -19.25186 -17.91268 -16.90093 -16.55620 -16.40116 -15.86248 -15.66264 -15.32196 -15.01204 -14.55995 -14.49035 -14.17296 -13.97168 -13.87539 -13.58835 -13.39320 -13.16687 -12.99914 -12.84521 -12.81603 -12.61661 -12.38970 -12.25361 -11.82777 -11.72654 -11.31492 -11.15189 -11.05102 -11.00795 -10.66063 -10.37473 -9.91061 -9.67312 -9.45853 -9.36144 -9.14041 -9.03911 -8.58919 -8.56337 -6.97642 -6.33261 -4.05731 1.12980 2.41804 2.60513 2.69689 2.76562 2.86662 3.08030 3.23767 3.29935 3.45883 3.58030 4.20651 4.28605 4.45546 4.54235 4.64540 4.68438 4.72169 4.93301 4.96697 5.01224 5.05741 5.11020 5.17600 5.28264 5.41935 5.44211 5.57387 5.63522 5.68016 5.68977 5.72179 5.78697 5.83911 5.89648 5.93822 6.07406 6.18219 6.33835 6.36694 6.55860 6.93884 7.11652 7.45810 7.81421 7.89781 8.36060 8.37401 9.12677 10.76011 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.002676 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.739725 B =10461.442591 C =12393.776545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.151 4.151 4 C 0.140 3.860 5 H 0.100 0.900 6 C 0.111 3.889 7 N -0.738 5.738 8 C 0.531 3.469 9 O -0.517 6.517 10 C -0.125 4.125 11 S -0.140 6.140 12 C -0.523 4.523 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.236 1.236 20 N -0.729 5.729 21 C 0.592 3.408 22 O -0.521 6.521 23 C -0.061 4.061 24 C -0.104 4.104 25 C -0.214 4.214 26 C 0.027 3.973 27 N -0.540 5.540 28 H 0.416 0.584 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.400 0.600 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.271 0.729 42 H 0.396 0.604 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.447 1.927 -14.558 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.209 4.209 4 C 0.036 3.964 5 H 0.118 0.882 6 C -0.013 4.013 7 N -0.393 5.393 8 C 0.317 3.683 9 O -0.391 6.391 10 C -0.275 4.275 11 S 0.086 5.914 12 C -0.670 4.670 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.516 5.516 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.160 1.160 20 N -0.380 5.380 21 C 0.380 3.620 22 O -0.396 6.396 23 C -0.174 4.174 24 C -0.131 4.131 25 C -0.238 4.238 26 C -0.110 4.110 27 N -0.136 5.136 28 H 0.254 0.746 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.234 0.766 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.230 0.770 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -21.336 3.449 -15.423 26.551 hybrid contribution 0.223 -1.206 0.650 1.388 sum -21.113 2.244 -14.773 25.865 Atomic orbital electron populations 1.21867 0.93848 1.02066 1.01782 1.21471 0.97090 0.96536 0.97088 1.21904 1.01451 0.95095 1.02448 1.21386 0.92502 0.82124 1.00417 0.88198 1.21686 0.91552 0.97764 0.90304 1.45980 1.07330 1.54944 1.31088 1.20303 0.81533 0.80528 0.85953 1.90709 1.54873 1.47024 1.46505 1.23280 1.03198 1.02247 0.98812 1.84782 0.97287 1.69304 1.40011 1.22309 0.96887 1.35891 1.11925 0.89400 1.24719 0.98351 0.93801 0.94438 1.69941 1.21630 1.36214 1.23834 0.86730 0.82315 0.79714 0.83053 1.19167 1.19912 1.15954 1.45970 1.17800 1.09977 1.64277 1.17003 0.81069 0.86426 0.77499 1.90868 1.56120 1.46137 1.46487 1.20424 0.96413 0.86905 1.13649 1.21347 0.95574 0.94980 1.01211 1.20939 0.99176 0.95400 1.08275 1.22101 0.92505 0.91878 1.04483 1.42058 1.16354 1.06773 1.48410 0.74640 0.91609 0.93324 0.92852 0.90888 0.91937 0.92175 0.92152 0.90951 0.89489 0.76583 0.88458 0.88591 0.91892 0.77048 0.83507 0.83858 0.81107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.71 37.16 0.29 -0.93 16 2 C -0.10 -0.77 2.69 -90.62 -0.24 -1.02 16 3 C -0.15 -1.08 8.84 37.16 0.33 -0.75 16 4 C 0.14 1.14 1.99 -67.93 -0.14 1.01 16 5 H 0.10 0.96 7.58 -51.93 -0.39 0.57 16 6 C 0.11 1.06 4.73 -4.04 -0.02 1.04 16 7 N -0.74 -8.44 5.39 -60.29 -0.32 -8.76 16 8 C 0.53 8.78 7.85 -10.98 -0.09 8.69 16 9 O -0.52 -10.47 15.86 5.56 0.09 -10.38 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.09 16 11 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 12 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 13 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 14 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 15 N -0.88 -26.33 13.97 55.49 0.78 -25.55 16 16 Si 0.86 21.49 27.74 -169.99 -4.71 16.78 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 20 N -0.73 -5.45 4.40 -55.11 -0.24 -5.70 16 21 C 0.59 5.79 6.14 -12.85 -0.08 5.71 16 22 O -0.52 -6.63 14.00 5.19 0.07 -6.55 16 23 C -0.06 -0.55 7.06 -81.98 -0.58 -1.13 16 24 C -0.10 -0.98 10.65 -39.12 -0.42 -1.39 16 25 C -0.21 -1.62 10.81 -39.97 -0.43 -2.06 16 26 C 0.03 0.16 11.89 -16.91 -0.20 -0.04 16 27 N -0.54 -3.44 5.99 -9.39 -0.06 -3.50 16 28 H 0.42 1.63 8.19 -40.82 -0.33 1.30 16 29 H 0.06 0.67 7.52 -51.93 -0.39 0.28 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.53 5.78 -51.93 -0.30 0.23 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.45 6.55 -51.93 -0.34 0.11 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.89 6.71 -51.93 -0.35 0.54 16 38 H 0.40 3.91 8.14 -40.82 -0.33 3.58 16 39 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 40 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.40 2.28 7.73 -40.82 -0.32 1.97 16 43 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -35.53 384.62 -8.30 -43.83 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.56 Total: 4.31 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.14 Total: -4.81 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.15 Total: -43.51 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.16 Total: -16.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.53 -8.30 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704836527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.316 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds