Wall clock time and date at job start Wed Apr 1 2020 00:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47194 * 2 1 4 4 C 1.53003 * 109.47030 * 120.00162 * 2 1 3 5 5 H 1.09003 * 109.46649 * 299.99867 * 4 2 1 6 6 C 1.53004 * 109.46861 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.46711 * 184.99496 * 6 4 2 8 8 C 1.34779 * 119.99499 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00582 * 0.02562 * 8 7 6 10 10 C 1.50705 * 119.99631 * 180.02562 * 8 7 6 11 11 S 1.80998 * 109.47135 * 180.02562 * 10 8 7 12 12 C 1.76198 * 100.00131 * 180.02562 * 11 10 8 13 13 H 1.08004 * 119.99782 * 359.97438 * 12 11 10 14 14 C 1.38797 * 119.99977 * 180.02562 * 12 11 10 15 15 N 1.31638 * 119.99736 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00256 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47131 * 90.00370 * 16 14 12 18 18 H 1.48494 * 109.47440 * 210.00393 * 16 14 12 19 19 H 1.48502 * 109.47214 * 330.00863 * 16 14 12 20 20 N 1.46493 * 109.47312 * 59.99886 * 4 2 1 21 21 C 1.34776 * 120.00435 * 275.00075 * 20 4 2 22 22 O 1.21700 * 119.99354 * 0.02562 * 21 20 4 23 23 C 1.46679 * 120.00261 * 179.97438 * 21 20 4 24 24 C 1.37867 * 126.22973 * 180.02562 * 23 21 20 25 25 C 1.39843 * 107.08397 * 180.02562 * 24 23 21 26 26 C 1.35457 * 107.86071 * 359.97438 * 25 24 23 27 27 N 1.35533 * 108.87474 * 0.23019 * 26 25 24 28 28 H 0.96993 * 125.68142 * 179.75463 * 27 26 25 29 29 H 1.08996 * 109.47291 * 299.99991 * 1 2 3 30 30 H 1.09007 * 109.46949 * 60.00171 * 1 2 3 31 31 H 1.09002 * 109.47146 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47296 * 239.99633 * 2 1 3 33 33 H 1.09003 * 109.47711 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47203 * 299.99828 * 3 2 1 35 35 H 1.09003 * 109.47299 * 59.99634 * 3 2 1 36 36 H 1.08996 * 109.47130 * 304.99559 * 6 4 2 37 37 H 1.09003 * 109.46887 * 65.00318 * 6 4 2 38 38 H 0.96998 * 120.00398 * 0.02562 * 7 6 4 39 39 H 1.09000 * 109.46999 * 300.00328 * 10 8 7 40 40 H 1.09000 * 109.47438 * 59.99747 * 10 8 7 41 41 H 0.96996 * 119.99656 * 179.97438 * 15 14 12 42 42 H 0.97005 * 119.99626 * 94.99852 * 20 4 2 43 43 H 1.08004 * 126.46139 * 0.02562 * 24 23 21 44 44 H 1.07994 * 126.06745 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.55847 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 7 4.0583 -1.5129 2.3810 8 6 5.3834 -1.6541 2.5827 9 8 6.1715 -1.1250 1.8278 10 6 5.8858 -2.4695 3.7463 11 16 7.6958 -2.4687 3.7468 12 6 8.0018 -3.4652 5.1673 13 1 7.1745 -3.8640 5.7356 14 6 9.3061 -3.7369 5.5565 15 7 9.5347 -4.4810 6.6181 16 14 10.7370 -3.0467 4.5741 17 1 11.1152 -1.7174 5.1176 18 1 11.8961 -3.9696 4.6726 19 1 10.3373 -2.9040 3.1510 20 7 1.5516 -2.1024 1.2493 21 6 0.3297 -2.3853 1.7425 22 8 -0.3682 -1.4931 2.1875 23 6 -0.1595 -3.7681 1.7420 24 6 -1.3816 -4.2003 2.2115 25 6 -1.4299 -5.5844 2.0178 26 6 -0.2626 -5.9649 1.4456 27 7 0.5200 -4.8712 1.2770 28 1 1.4100 -4.8664 0.8915 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9336 -1.1548 0.3182 37 1 3.9329 0.3032 1.3394 38 1 3.4280 -1.9364 2.9846 39 1 5.5223 -2.0356 4.6778 40 1 5.5225 -3.4932 3.6564 41 1 10.4462 -4.6711 6.8899 42 1 2.1078 -2.8135 0.8942 43 1 -2.1557 -3.5858 2.6468 44 1 -2.2520 -6.2345 2.2782 45 1 0.0029 -6.9755 1.1724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704836527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:42 Heat of formation + Delta-G solvation = -64.468249 kcal Electronic energy + Delta-G solvation = -26716.062057 eV Core-core repulsion = 22859.109589 eV Total energy + Delta-G solvation = -3856.952468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.26863 -41.07729 -40.26690 -37.99864 -35.37756 -34.68182 -34.48638 -32.00092 -31.60293 -30.33136 -29.02693 -27.87698 -27.69529 -24.66710 -23.42900 -21.96572 -21.49404 -21.21071 -20.98064 -20.13436 -19.66418 -17.89349 -17.71057 -17.40476 -17.07958 -16.64048 -16.58492 -16.40446 -15.73399 -15.27632 -15.08270 -15.05326 -14.87807 -14.74315 -14.55688 -14.22681 -14.05300 -13.65651 -13.60817 -13.40998 -13.34502 -13.17124 -13.03443 -13.01826 -12.73602 -12.67650 -12.40333 -11.87906 -11.82972 -11.66846 -11.18119 -11.17588 -11.06975 -10.55368 -10.24463 -10.18203 -9.94386 -9.17717 -9.00501 -8.52530 -6.23497 0.47185 0.97338 1.31472 1.45627 1.51942 1.54522 1.84783 1.94391 2.16965 2.24142 2.26476 2.37991 2.69607 2.85923 3.45611 3.74146 3.84806 3.92383 3.97733 4.17348 4.24991 4.29636 4.34307 4.43159 4.44690 4.52890 4.59837 4.65621 4.79614 4.82092 4.95897 5.02720 5.11508 5.16199 5.22703 5.27119 5.32509 5.42436 5.49418 5.69509 5.74854 5.94541 6.10482 6.34246 6.38743 6.59167 6.92547 7.10043 7.11459 8.60017 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.002676 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.739725 B =10461.442591 C =12393.776545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 C -0.150 4.150 4 C 0.150 3.850 5 H 0.087 0.913 6 C 0.115 3.885 7 N -0.713 5.713 8 C 0.539 3.461 9 O -0.555 6.555 10 C -0.114 4.114 11 S -0.169 6.169 12 C -0.530 4.530 13 H 0.060 0.940 14 C 0.045 3.955 15 N -0.918 5.918 16 Si 0.915 3.085 17 H -0.263 1.263 18 H -0.260 1.260 19 H -0.234 1.234 20 N -0.716 5.716 21 C 0.593 3.407 22 O -0.557 6.557 23 C -0.081 4.081 24 C -0.127 4.127 25 C -0.231 4.231 26 C 0.041 3.959 27 N -0.529 5.529 28 H 0.429 0.571 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.411 0.589 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.277 0.723 42 H 0.407 0.593 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.522 1.559 -16.426 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.116 4.116 3 C -0.208 4.208 4 C 0.045 3.955 5 H 0.105 0.895 6 C -0.009 4.009 7 N -0.367 5.367 8 C 0.325 3.675 9 O -0.433 6.433 10 C -0.265 4.265 11 S 0.057 5.943 12 C -0.678 4.678 13 H 0.079 0.921 14 C -0.161 4.161 15 N -0.556 5.556 16 Si 0.737 3.263 17 H -0.188 1.188 18 H -0.184 1.184 19 H -0.157 1.157 20 N -0.368 5.368 21 C 0.383 3.617 22 O -0.435 6.435 23 C -0.194 4.194 24 C -0.155 4.155 25 C -0.255 4.255 26 C -0.096 4.096 27 N -0.126 5.126 28 H 0.269 0.731 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.247 0.753 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.243 0.757 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -21.428 3.064 -17.301 27.711 hybrid contribution 0.035 -1.130 1.237 1.676 sum -21.393 1.934 -16.064 26.823 Atomic orbital electron populations 1.21775 0.94677 1.01092 1.01345 1.21433 0.96150 0.96988 0.97022 1.21896 1.01511 0.94670 1.02697 1.21243 0.91395 0.82402 1.00414 0.89481 1.21799 0.92076 0.97385 0.89612 1.45727 1.05670 1.53933 1.31403 1.19851 0.82756 0.80042 0.84898 1.90705 1.56165 1.48762 1.47664 1.23281 0.98423 1.04187 1.00619 1.84658 1.03265 1.68394 1.37935 1.22471 0.96323 1.36033 1.12965 0.92143 1.25590 1.00961 0.94127 0.95394 1.70024 1.22632 1.37581 1.25383 0.85853 0.79495 0.79300 0.81635 1.18813 1.18407 1.15743 1.45820 1.17272 1.10093 1.63632 1.17115 0.81191 0.86469 0.76970 1.90851 1.57189 1.47215 1.48255 1.20282 0.96865 0.87169 1.15061 1.21506 0.95882 0.96138 1.01928 1.21210 1.00515 0.94755 1.08989 1.22680 0.91592 0.92984 1.02390 1.42053 1.16805 1.06074 1.47677 0.73139 0.93390 0.92352 0.94090 0.89649 0.91731 0.91335 0.92608 0.89990 0.89578 0.75254 0.87395 0.86750 0.91362 0.75722 0.84584 0.82527 0.77639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.71 71.98 0.56 -1.66 16 2 C -0.10 -1.29 2.69 -10.80 -0.03 -1.32 16 3 C -0.15 -1.88 8.84 71.98 0.64 -1.25 16 4 C 0.15 2.21 1.99 45.00 0.09 2.29 16 5 H 0.09 1.59 7.58 -2.39 -0.02 1.57 16 6 C 0.12 1.92 4.73 86.38 0.41 2.33 16 7 N -0.71 -14.59 5.39 -463.04 -2.50 -17.09 16 8 C 0.54 16.72 7.85 87.66 0.69 17.41 16 9 O -0.56 -21.56 15.86 -3.02 -0.05 -21.61 16 10 C -0.11 -4.05 6.16 71.24 0.44 -3.62 16 11 S -0.17 -8.23 18.55 -56.49 -1.05 -9.27 16 12 C -0.53 -30.30 10.04 67.95 0.68 -29.62 16 13 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 14 C 0.04 2.58 5.50 84.86 0.47 3.05 16 15 N -0.92 -55.41 13.97 21.65 0.30 -55.11 16 16 Si 0.92 44.12 27.74 68.60 1.90 46.02 16 17 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.23 -11.11 6.74 99.48 0.67 -10.44 16 20 N -0.72 -9.56 4.40 -446.49 -1.97 -11.52 16 21 C 0.59 11.29 6.14 86.45 0.53 11.82 16 22 O -0.56 -14.44 14.00 -4.35 -0.06 -14.50 16 23 C -0.08 -1.39 7.06 40.35 0.28 -1.11 16 24 C -0.13 -2.39 10.65 22.57 0.24 -2.15 16 25 C -0.23 -3.21 10.81 22.02 0.24 -2.97 16 26 C 0.04 0.40 11.89 83.48 0.99 1.39 16 27 N -0.53 -5.58 5.99 -183.62 -1.10 -6.68 16 28 H 0.43 2.14 8.19 -92.71 -0.76 1.38 16 29 H 0.05 0.98 7.52 -2.39 -0.02 0.96 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.04 0.79 5.78 -2.39 -0.01 0.78 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.80 6.55 -2.39 -0.02 0.78 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.58 6.71 -2.39 -0.02 1.56 16 38 H 0.41 6.96 8.14 -92.71 -0.75 6.20 16 39 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 40 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.41 3.66 7.73 -92.70 -0.72 2.94 16 43 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -77.84 384.62 0.48 -77.36 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -1.23 Total: 17.80 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 6.22 Total: -5.39 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -5.26 Total: -90.40 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.11 Total: -36.11 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.90 Total: 46.02 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.05 Total: -9.27 kcal Total: -77.84 0.48 -77.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704836527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.890 kcal (2) G-P(sol) polarization free energy of solvation -77.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds