Wall clock time and date at job start Wed Apr 1 2020 00:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 C 1.53008 * 109.46887 * 119.99427 * 2 1 3 5 5 H 1.08999 * 109.47058 * 300.00064 * 4 2 1 6 6 C 1.52999 * 109.46675 * 180.02562 * 4 2 1 7 7 N 1.46510 * 109.46482 * 185.00168 * 6 4 2 8 8 C 1.34776 * 119.99685 * 179.97438 * 7 6 4 9 9 O 1.21625 * 120.00030 * 359.97438 * 8 7 6 10 10 C 1.47259 * 119.99893 * 180.02562 * 8 7 6 11 11 C 1.46690 * 126.94165 * 179.97438 * 10 8 7 12 12 C 1.34499 * 106.33087 * 179.97438 * 11 10 8 13 13 N 1.36447 * 108.85671 * 0.02562 * 12 11 10 14 14 H 0.96993 * 124.85156 * 180.02562 * 13 12 11 15 15 C 1.34668 * 110.29546 * 359.74865 * 13 12 11 16 16 N 1.46499 * 109.47014 * 60.00396 * 4 2 1 17 17 C 1.34777 * 119.99665 * 275.27733 * 16 4 2 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 4 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 4 20 20 S 1.81005 * 109.46906 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99828 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00390 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99869 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99970 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00277 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46770 * 60.00115 * 25 23 21 27 27 H 1.48499 * 109.47505 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46733 * 300.00357 * 25 23 21 29 29 H 1.08999 * 109.47324 * 300.00672 * 1 2 3 30 30 H 1.09009 * 109.46719 * 60.00304 * 1 2 3 31 31 H 1.08996 * 109.46992 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47710 * 239.99701 * 2 1 3 33 33 H 1.09006 * 109.47129 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47284 * 299.99509 * 3 2 1 35 35 H 1.08999 * 109.47607 * 59.99501 * 3 2 1 36 36 H 1.08998 * 109.47318 * 304.99262 * 6 4 2 37 37 H 1.08988 * 109.47710 * 65.00512 * 6 4 2 38 38 H 0.97003 * 120.00089 * 359.97438 * 7 6 4 39 39 H 1.07991 * 126.83582 * 359.95468 * 11 10 8 40 40 H 1.07994 * 125.57124 * 180.02562 * 12 11 10 41 41 H 1.08000 * 125.79787 * 180.29285 * 15 13 12 42 42 H 0.97001 * 119.99790 * 94.99446 * 16 4 2 43 43 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 44 44 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 45 45 H 0.97008 * 120.00004 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6766 -0.2072 2.1393 6 6 3.5699 -0.7206 1.2497 7 7 4.0583 -1.5128 2.3812 8 6 5.3833 -1.6540 2.5830 9 8 6.1737 -1.1242 1.8254 10 6 5.8742 -2.4508 3.7200 11 6 7.2734 -2.7038 4.0804 12 6 7.2467 -3.4749 5.1821 13 7 5.9469 -3.7130 5.5223 14 1 5.6612 -4.2441 6.2819 15 6 5.1176 -3.1000 4.6562 16 7 1.5517 -2.1024 1.2494 17 6 0.3274 -2.3843 1.7375 18 8 -0.3679 -1.4952 2.1814 19 6 -0.1773 -3.8042 1.7319 20 16 -1.8390 -3.8566 2.4477 21 6 -2.1734 -5.5818 2.3185 22 1 -1.4356 -6.2444 1.8909 23 6 -3.3853 -6.0892 2.7663 24 7 -4.2849 -5.2815 3.2870 25 14 -3.7402 -7.9180 2.6287 26 1 -2.7253 -8.6786 3.4013 27 1 -5.0924 -8.2022 3.1728 28 1 -3.6851 -8.3270 1.2022 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9565 0.8899 36 1 3.9336 -1.1548 0.3184 37 1 3.9329 0.3031 1.3394 38 1 3.4279 -1.9357 2.9852 39 1 8.1505 -2.3431 3.5638 40 1 8.1124 -3.8451 5.7110 41 1 4.0384 -3.1192 4.6938 42 1 2.1078 -2.8134 0.8944 43 1 -0.2110 -4.1738 0.7070 44 1 0.4919 -4.4301 2.3220 45 1 -5.1320 -5.6361 3.5996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704851315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:34 Heat of formation + Delta-G solvation = -65.890561 kcal Electronic energy + Delta-G solvation = -26709.646335 eV Core-core repulsion = 22852.632191 eV Total energy + Delta-G solvation = -3857.014144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00786 -41.18693 -39.97292 -37.92784 -35.27781 -34.57099 -34.30463 -32.05590 -31.07091 -30.32653 -29.00721 -27.75604 -27.45692 -24.81195 -23.14897 -21.89472 -21.48496 -21.28335 -20.45674 -19.81703 -19.53599 -17.89123 -17.56149 -17.27386 -16.86188 -16.75609 -16.41945 -16.20549 -15.90207 -15.12743 -15.00503 -14.84145 -14.71888 -14.62782 -14.49331 -14.28642 -13.85999 -13.69062 -13.53266 -13.39402 -13.14920 -13.02952 -12.97886 -12.86574 -12.66864 -12.57263 -12.33272 -11.78923 -11.70951 -11.58549 -11.11512 -11.04905 -10.81144 -10.23529 -10.17458 -10.01296 -9.71744 -9.29104 -8.61959 -8.33171 -6.09484 0.78098 1.28972 1.43645 1.48011 1.56447 1.57610 1.69200 2.14919 2.28029 2.34451 2.50228 2.60287 3.01052 3.34862 3.55445 3.86783 4.01276 4.03969 4.08174 4.11101 4.30244 4.35431 4.36957 4.40029 4.52317 4.56704 4.67737 4.73372 4.84304 4.88316 5.00610 5.03648 5.08596 5.11816 5.21046 5.33730 5.43376 5.45045 5.49748 5.59395 5.75829 5.97068 6.20988 6.53283 6.57450 6.68763 7.08778 7.30991 7.32179 8.75314 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008910 B = 0.003039 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3141.948376 B = 9210.045943 C =11890.729184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.146 4.146 4 C 0.148 3.852 5 H 0.082 0.918 6 C 0.122 3.878 7 N -0.719 5.719 8 C 0.588 3.412 9 O -0.592 6.592 10 C -0.269 4.269 11 C -0.181 4.181 12 C -0.005 4.005 13 N -0.537 5.537 14 H 0.436 0.564 15 C 0.062 3.938 16 N -0.711 5.711 17 C 0.540 3.460 18 O -0.546 6.546 19 C -0.133 4.133 20 S -0.141 6.141 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.993 3.007 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.265 1.265 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.408 0.592 39 H 0.137 0.863 40 H 0.203 0.797 41 H 0.193 0.807 42 H 0.413 0.587 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.152 4.442 0.673 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.117 4.117 3 C -0.203 4.203 4 C 0.043 3.957 5 H 0.100 0.900 6 C -0.002 4.002 7 N -0.371 5.371 8 C 0.379 3.621 9 O -0.474 6.474 10 C -0.280 4.280 11 C -0.205 4.205 12 C -0.133 4.133 13 N -0.133 5.133 14 H 0.276 0.724 15 C -0.076 4.076 16 N -0.365 5.365 17 C 0.326 3.674 18 O -0.423 6.423 19 C -0.284 4.284 20 S 0.086 5.914 21 C -0.696 4.696 22 H 0.099 0.901 23 C -0.189 4.189 24 N -0.547 5.547 25 Si 0.815 3.185 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.189 1.189 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.244 0.756 39 H 0.155 0.845 40 H 0.220 0.780 41 H 0.210 0.790 42 H 0.249 0.751 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.377 6.240 1.073 22.295 hybrid contribution -0.096 -2.525 -0.195 2.534 sum 21.280 3.715 0.878 21.620 Atomic orbital electron populations 1.21792 0.95560 1.00862 1.01010 1.21450 0.95381 0.97385 0.97457 1.21871 1.01635 0.94287 1.02543 1.21242 0.92022 0.82535 0.99877 0.89993 1.21656 0.91338 0.97331 0.89915 1.45748 1.06502 1.53792 1.31051 1.17716 0.81728 0.79026 0.83678 1.90726 1.56536 1.51127 1.49042 1.20496 0.95317 1.11112 1.01049 1.22094 0.95232 1.03926 0.99231 1.22270 0.87596 1.03917 0.99509 1.41714 1.05928 1.40613 1.25021 0.72407 1.22281 0.97358 0.96736 0.91261 1.45825 1.16738 1.10019 1.63968 1.19837 0.81480 0.89397 0.76685 1.90726 1.56728 1.48461 1.46380 1.23396 1.01831 0.97316 1.05836 1.85518 1.13837 1.11640 1.80397 1.23185 1.05482 0.93333 1.47569 0.90118 1.26053 0.94780 1.04191 0.93898 1.70168 1.07566 1.37524 1.39441 0.85079 0.77640 0.76665 0.79097 1.18557 1.20550 1.18933 0.93777 0.92534 0.94784 0.89657 0.91059 0.91552 0.92774 0.90293 0.89459 0.75605 0.84525 0.77981 0.78979 0.75069 0.87995 0.87168 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 7.71 71.98 0.56 -3.04 16 2 C -0.10 -1.89 2.69 -10.79 -0.03 -1.92 16 3 C -0.15 -2.35 8.84 71.98 0.64 -1.72 16 4 C 0.15 2.94 2.00 44.99 0.09 3.03 16 5 H 0.08 1.94 7.58 -2.39 -0.02 1.92 16 6 C 0.12 2.16 4.73 86.38 0.41 2.57 16 7 N -0.72 -13.44 5.38 -466.53 -2.51 -15.95 16 8 C 0.59 14.36 7.81 86.61 0.68 15.03 16 9 O -0.59 -19.03 16.97 -4.11 -0.07 -19.10 16 10 C -0.27 -5.57 6.29 -19.04 -0.12 -5.69 16 11 C -0.18 -3.48 10.97 23.62 0.26 -3.22 16 12 C 0.00 -0.05 11.89 83.12 0.99 0.93 16 13 N -0.54 -5.19 5.90 -194.55 -1.15 -6.34 16 14 H 0.44 1.31 8.96 -92.71 -0.83 0.48 16 15 C 0.06 0.86 11.40 83.91 0.96 1.82 16 16 N -0.71 -15.29 4.41 -442.52 -1.95 -17.24 16 17 C 0.54 17.28 6.19 87.66 0.54 17.82 16 18 O -0.55 -21.97 12.97 -3.04 -0.04 -22.01 16 19 C -0.13 -4.78 6.16 71.24 0.44 -4.35 16 20 S -0.14 -7.40 20.57 -56.49 -1.16 -8.56 16 21 C -0.55 -30.16 9.50 67.95 0.65 -29.51 16 22 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 23 C 0.02 0.87 5.49 84.86 0.47 1.34 16 24 N -0.91 -54.57 13.22 21.65 0.29 -54.28 16 25 Si 0.99 42.40 29.55 68.60 2.03 44.42 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 27 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 29 H 0.04 1.35 7.53 -2.39 -0.02 1.33 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 31 H 0.03 1.07 5.76 -2.39 -0.01 1.06 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 33 H 0.07 0.98 6.54 -2.38 -0.02 0.97 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.58 6.71 -2.39 -0.02 1.56 16 38 H 0.41 6.48 7.08 -92.71 -0.66 5.83 16 39 H 0.14 2.76 8.06 -2.92 -0.02 2.74 16 40 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.19 1.74 7.45 -2.91 -0.02 1.72 16 42 H 0.41 6.86 8.60 -92.71 -0.80 6.06 16 43 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 44 H 0.11 3.49 8.14 -2.40 -0.02 3.47 16 45 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -81.69 387.41 0.70 -80.98 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -1.24 Total: 24.99 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 6.51 Total: -6.91 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -5.32 Total: -93.81 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -0.11 Total: -41.11 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -1.16 Total: -8.56 kcal Total: -81.69 0.70 -80.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704851315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.093 kcal (2) G-P(sol) polarization free energy of solvation -81.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds