Wall clock time and date at job start Wed Apr 1 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47218 * 2 1 4 4 N 1.46498 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.34783 * 120.00412 * 275.59263 * 4 3 2 6 6 O 1.21643 * 120.00349 * 185.74561 * 5 4 3 7 7 C 1.47182 * 119.99364 * 5.74652 * 5 4 3 8 8 C 1.35095 * 122.48344 * 174.95891 * 7 5 4 9 9 S 1.76190 * 108.21585 * 179.87658 * 8 7 5 10 10 C 1.76048 * 90.16001 * 0.31645 * 9 8 7 11 11 O 1.35497 * 125.18269 * 179.83093 * 10 9 8 12 12 N 1.29255 * 109.64223 * 359.81906 * 10 9 8 13 13 C 1.46500 * 119.99928 * 95.59364 * 4 3 2 14 14 C 1.53078 * 109.45431 * 119.79260 * 13 4 3 15 15 C 1.53190 * 109.29597 * 181.24522 * 14 13 4 16 16 N 1.46923 * 108.89157 * 305.57196 * 15 14 13 17 17 C 1.36938 * 120.63321 * 233.51921 * 16 15 14 18 18 H 1.07999 * 120.00160 * 144.82860 * 17 16 15 19 19 C 1.38809 * 119.99587 * 324.82431 * 17 16 15 20 20 N 1.31619 * 120.00280 * 4.64979 * 19 17 16 21 21 Si 1.86799 * 119.99893 * 184.65179 * 19 17 16 22 22 H 1.48497 * 109.47348 * 89.99978 * 21 19 17 23 23 H 1.48501 * 109.47421 * 210.00287 * 21 19 17 24 24 H 1.48508 * 109.47092 * 329.99850 * 21 19 17 25 25 C 1.46931 * 118.73839 * 53.53868 * 16 15 14 26 26 C 1.53038 * 109.46103 * 239.99791 * 13 4 3 27 27 H 1.08997 * 109.46838 * 299.99573 * 1 2 3 28 28 H 1.08998 * 109.46960 * 59.99779 * 1 2 3 29 29 H 1.08999 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47072 * 240.00319 * 2 1 3 31 31 H 1.08999 * 109.47342 * 120.00601 * 2 1 3 32 32 H 1.08997 * 109.46867 * 60.00445 * 3 2 1 33 33 H 1.08998 * 109.47335 * 299.99991 * 3 2 1 34 34 H 1.07994 * 125.88999 * 359.96073 * 8 7 5 35 35 H 0.96695 * 114.00441 * 269.98220 * 11 10 9 36 36 H 1.08995 * 109.46083 * 359.97176 * 13 4 3 37 37 H 1.08997 * 109.39462 * 61.36061 * 14 13 4 38 38 H 1.09006 * 109.61514 * 301.25827 * 14 13 4 39 39 H 1.08997 * 109.58574 * 185.71427 * 15 14 13 40 40 H 1.09004 * 109.58886 * 65.43067 * 15 14 13 41 41 H 0.97003 * 119.99569 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.58435 * 66.17835 * 25 16 15 43 43 H 1.09003 * 109.58695 * 186.45796 * 25 16 15 44 44 H 1.08999 * 109.49578 * 58.66330 * 26 13 4 45 45 H 1.09006 * 109.50071 * 298.57068 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1795 1.3285 1.1607 6 8 5.3913 1.4332 1.1731 7 6 3.4496 1.0774 2.4139 8 6 4.0793 0.8559 3.5884 9 16 2.8554 0.6054 4.8309 10 6 1.5858 0.8165 3.6298 11 8 0.2558 0.7491 3.8795 12 7 2.1155 1.0460 2.4733 13 6 4.2369 1.5663 -1.2636 14 6 5.1130 2.8210 -1.2243 15 6 5.8528 2.9638 -2.5580 16 7 6.5868 1.7206 -2.8305 17 6 7.9282 1.7479 -3.1042 18 1 8.5658 0.9465 -2.7611 19 6 8.4685 2.8056 -3.8227 20 7 7.7100 3.8264 -4.1618 21 14 10.2720 2.7801 -4.3084 22 1 10.4183 2.1291 -5.6350 23 1 10.7849 4.1719 -4.3808 24 1 11.0468 2.0192 -3.2954 25 6 5.8539 0.4473 -2.8041 26 6 5.1166 0.3305 -1.4664 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.1484 0.8372 3.7399 35 1 -0.1176 -0.1379 3.7858 36 1 3.5282 1.6466 -2.0877 37 1 5.8369 2.7317 -0.4143 38 1 4.4880 3.6986 -1.0591 39 1 6.5536 3.7966 -2.4997 40 1 5.1340 3.1464 -3.3569 41 1 8.0877 4.5656 -4.6636 42 1 5.1336 0.4234 -3.6217 43 1 6.5553 -0.3803 -2.9107 44 1 4.4927 -0.5633 -1.4718 45 1 5.8422 0.2633 -0.6557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713101774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:04 Heat of formation + Delta-G solvation = -7.598723 kcal Electronic energy + Delta-G solvation = -28497.710103 eV Core-core repulsion = 24643.223683 eV Total energy + Delta-G solvation = -3854.486420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.94559 -40.30908 -38.76564 -37.93760 -37.16268 -34.86315 -33.42414 -31.83791 -31.37515 -30.88801 -27.59843 -27.11564 -26.00303 -24.17499 -23.82848 -22.82439 -22.33138 -21.10217 -20.63332 -19.59448 -19.06862 -18.34315 -17.73585 -16.99986 -16.91694 -16.48780 -16.11013 -15.55154 -15.49453 -15.47273 -15.26330 -15.11205 -14.79425 -14.60027 -14.11679 -14.04690 -13.90851 -13.32467 -13.20359 -13.07700 -12.92210 -12.80197 -12.68181 -12.57916 -12.52078 -12.27155 -12.11234 -11.95615 -11.80466 -11.61031 -11.40547 -11.33548 -10.84695 -10.57480 -10.51747 -10.37951 -9.92794 -9.50280 -8.55653 -7.85676 -5.41863 -0.63944 -0.05188 0.38095 0.81556 1.45619 1.46851 1.56167 1.99514 2.24069 2.43809 2.49858 3.28329 3.48588 3.70821 3.90723 4.05789 4.11008 4.12044 4.16144 4.29972 4.35611 4.50816 4.55462 4.58487 4.62956 4.69688 4.86459 4.91477 4.95753 4.99214 5.06724 5.12462 5.17384 5.29697 5.35220 5.41598 5.55912 5.58499 5.63897 5.72854 5.85371 6.19142 6.38880 6.46862 6.50089 7.13761 7.18037 7.85719 8.39669 9.17783 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.003011 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.977798 B = 9297.535435 C =10127.055041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.104 3.896 4 N -0.590 5.590 5 C 0.578 3.422 6 O -0.560 6.560 7 C 0.010 3.990 8 C -0.176 4.176 9 S 0.159 5.841 10 C 0.256 3.744 11 O -0.430 6.430 12 N -0.460 5.460 13 C 0.168 3.832 14 C -0.141 4.141 15 C 0.181 3.819 16 N -0.612 5.612 17 C -0.267 4.267 18 H 0.059 0.941 19 C -0.045 4.045 20 N -0.932 5.932 21 Si 0.971 3.029 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.273 1.273 25 C 0.149 3.851 26 C -0.129 4.129 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.193 0.807 35 H 0.431 0.569 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.001 0.999 41 H 0.251 0.749 42 H 0.026 0.974 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.925 -9.841 18.535 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C -0.018 4.018 4 N -0.320 5.320 5 C 0.364 3.636 6 O -0.439 6.439 7 C -0.121 4.121 8 C -0.317 4.317 9 S 0.407 5.593 10 C -0.064 4.064 11 O -0.240 6.240 12 N -0.188 5.188 13 C 0.065 3.935 14 C -0.182 4.182 15 C 0.054 3.946 16 N -0.336 5.336 17 C -0.397 4.397 18 H 0.076 0.924 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.198 1.198 25 C 0.023 3.977 26 C -0.169 4.169 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.127 0.873 33 H 0.092 0.908 34 H 0.210 0.790 35 H 0.294 0.706 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.019 0.981 41 H 0.060 0.940 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.654 -9.204 19.201 28.977 hybrid contribution 1.513 0.035 -1.378 2.047 sum -18.141 -9.169 17.823 27.033 Atomic orbital electron populations 1.21575 0.93454 1.02045 1.02277 1.21705 0.97373 0.95807 1.00784 1.22246 0.76621 0.98821 1.04062 1.48133 1.08211 1.70295 1.05335 1.17597 0.86042 0.76890 0.83076 1.90834 1.14736 1.51936 1.86415 1.19733 0.88089 1.09311 0.94981 1.27308 1.06145 1.04025 0.94263 1.85128 0.96766 1.65601 1.11759 1.25395 0.90222 1.01609 0.89156 1.84838 1.12890 1.38217 1.88072 1.67181 1.09778 1.17645 1.24167 1.20920 0.93080 0.94999 0.84511 1.22443 0.98837 0.96554 1.00318 1.20658 0.93258 0.90116 0.90536 1.44228 1.05441 1.01999 1.81891 1.19436 0.85058 1.07689 1.27499 0.92368 1.26047 1.02503 0.97558 0.97898 1.70080 1.36468 1.08953 1.42271 0.85227 0.79884 0.76647 0.78420 1.20660 1.21722 1.19781 1.20977 0.94205 0.88415 0.94106 1.22197 0.98700 0.96943 0.99015 0.91697 0.92770 0.91999 0.93580 0.92541 0.87282 0.90771 0.79031 0.70586 0.89030 0.92825 0.92808 0.91673 0.98079 0.93959 0.95614 0.92791 0.90812 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.12 -2.33 5.59 30.59 0.17 -2.16 16 3 C 0.10 2.48 4.96 86.38 0.43 2.91 16 4 N -0.59 -18.53 2.43 -801.74 -1.95 -20.48 16 5 C 0.58 19.50 7.01 86.59 0.61 20.10 16 6 O -0.56 -23.51 12.95 -4.17 -0.05 -23.56 16 7 C 0.01 0.26 6.19 40.51 0.25 0.51 16 8 C -0.18 -3.66 10.84 67.10 0.73 -2.93 16 9 S 0.16 2.06 23.42 -56.49 -1.32 0.74 16 10 C 0.26 3.70 8.88 130.62 1.16 4.86 16 11 O -0.43 -3.72 13.64 -87.98 -1.20 -4.92 16 12 N -0.46 -9.33 4.91 -304.24 -1.49 -10.83 16 13 C 0.17 6.18 2.50 45.03 0.11 6.29 16 14 C -0.14 -6.29 5.28 30.68 0.16 -6.13 16 15 C 0.18 9.50 5.26 86.36 0.45 9.96 16 16 N -0.61 -33.28 3.00 -699.10 -2.10 -35.38 16 17 C -0.27 -15.71 9.56 84.03 0.80 -14.91 16 18 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 19 C -0.04 -2.62 5.33 84.86 0.45 -2.17 16 20 N -0.93 -56.84 10.58 21.65 0.23 -56.61 16 21 Si 0.97 46.85 29.56 68.60 2.03 48.88 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 24 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 25 C 0.15 6.66 6.52 86.36 0.56 7.22 16 26 C -0.13 -5.00 5.27 30.67 0.16 -4.84 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 1.18 6.46 -2.39 -0.02 1.16 16 32 H 0.11 2.58 5.50 -2.39 -0.01 2.57 16 33 H 0.07 1.67 7.80 -2.39 -0.02 1.65 16 34 H 0.19 3.95 8.01 -2.91 -0.02 3.93 16 35 H 0.43 -0.86 9.06 -74.06 -0.67 -1.54 16 36 H 0.09 3.13 7.72 -2.39 -0.02 3.11 16 37 H 0.05 2.70 6.03 -2.39 -0.01 2.69 16 38 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.07 3.92 5.88 -2.39 -0.01 3.90 16 40 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 2.37 7.93 -2.39 -0.02 2.35 16 44 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 45 H 0.05 2.28 6.41 -2.38 -0.02 2.27 16 Total: -1.00 -75.20 367.01 1.25 -73.95 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.35 Total: 10.69 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.77 Total: 17.54 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.32 Total: -123.30 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -1.25 Total: -28.48 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -75.20 1.25 -73.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713101774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.351 kcal (2) G-P(sol) polarization free energy of solvation -75.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds