Wall clock time and date at job start Tue Mar 31 2020 23:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 C 1.52999 * 109.46861 * 120.00241 * 2 1 3 5 5 C 1.53001 * 109.47068 * 174.99801 * 4 2 1 6 6 H 1.08999 * 109.46888 * 55.00203 * 5 4 2 7 7 C 1.53003 * 109.47014 * 174.99449 * 5 4 2 8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 4 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31617 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47045 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99572 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99815 * 13 11 9 17 17 N 1.46491 * 109.46969 * 295.00053 * 5 4 2 18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 4 19 19 O 1.21620 * 119.99902 * 0.02562 * 18 17 5 20 20 C 1.47178 * 119.99790 * 179.97438 * 18 17 5 21 21 C 1.36614 * 125.15913 * 179.72137 * 20 18 17 22 22 C 1.36791 * 114.74192 * 179.78597 * 21 20 18 23 23 C 1.36617 * 114.74925 * 0.50075 * 22 21 20 24 24 C 1.47168 * 125.16453 * 179.70029 * 23 22 21 25 25 N 1.34775 * 119.99793 * 179.97438 * 24 23 22 26 26 O 1.21629 * 120.00046 * 0.02562 * 24 23 22 27 27 S 1.75832 * 125.16323 * 0.02562 * 20 18 17 28 28 H 1.09003 * 109.47087 * 299.99958 * 1 2 3 29 29 H 1.08997 * 109.46846 * 60.00112 * 1 2 3 30 30 H 1.08995 * 109.47524 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46739 * 239.99876 * 2 1 3 32 32 H 1.09003 * 109.47029 * 60.00006 * 3 2 1 33 33 H 1.09002 * 109.47417 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46940 * 300.00263 * 3 2 1 35 35 H 1.08995 * 109.47735 * 54.99753 * 4 2 1 36 36 H 1.09005 * 109.47269 * 294.99683 * 4 2 1 37 37 H 1.08998 * 109.46692 * 55.00382 * 7 5 4 38 38 H 1.08994 * 109.47584 * 295.00246 * 7 5 4 39 39 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 40 40 H 0.97004 * 120.00382 * 180.02562 * 12 11 9 41 41 H 0.97006 * 119.99804 * 264.99213 * 17 5 4 42 42 H 1.08001 * 122.62991 * 0.02562 * 21 20 18 43 43 H 1.08004 * 122.63045 * 180.24995 * 22 21 20 44 44 H 0.96995 * 120.00493 * 0.02562 * 25 24 23 45 45 H 0.97003 * 119.99712 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8312 1.1880 6 1 3.9954 0.1610 1.0528 7 6 4.0851 -1.4395 2.4919 8 7 5.5303 -1.6552 2.3875 9 6 6.2198 -2.1948 3.4403 10 1 5.6982 -2.4611 4.3478 11 6 7.5883 -2.4045 3.3395 12 7 8.2231 -2.0850 2.2316 13 14 8.5288 -3.1413 4.7754 14 1 7.5913 -3.4107 5.8951 15 1 9.1687 -4.4115 4.3485 16 1 9.5742 -2.1868 5.2244 17 7 3.9478 -1.6872 0.0626 18 6 4.0651 -1.1631 -1.1735 19 8 3.8533 0.0208 -1.3546 20 6 4.4505 -2.0231 -2.3039 21 6 4.5946 -1.6056 -3.5967 22 6 4.9650 -2.5850 -4.4768 23 6 5.1202 -3.8237 -3.9218 24 6 5.5062 -5.0392 -4.6563 25 7 5.6300 -6.2111 -4.0021 26 8 5.7145 -4.9861 -5.8534 27 16 4.7879 -3.7454 -2.1970 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9562 -0.8899 35 1 1.6054 -1.7198 1.2952 36 1 1.7516 -0.1584 2.1370 37 1 3.5876 -2.3924 2.6721 38 1 3.8779 -0.7595 3.3182 39 1 5.9989 -1.4158 1.5726 40 1 9.1793 -2.2318 2.1609 41 1 4.1172 -2.6314 0.2072 42 1 4.4327 -0.5816 -3.8994 43 1 5.1187 -2.3950 -5.5288 44 1 5.4643 -6.2534 -3.0474 45 1 5.8848 -7.0122 -4.4862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715393625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:53 Heat of formation + Delta-G solvation = -41.392066 kcal Electronic energy + Delta-G solvation = -27353.854112 eV Core-core repulsion = 23497.902302 eV Total energy + Delta-G solvation = -3855.951809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.10586 -39.70240 -37.54363 -36.43006 -35.03554 -34.01881 -33.56656 -31.44059 -30.15698 -29.02624 -26.93378 -25.92274 -25.55411 -23.03618 -22.14583 -21.72077 -20.51928 -19.81927 -19.31551 -18.80305 -17.33184 -17.16275 -16.79758 -15.93554 -15.79863 -15.56111 -15.09981 -14.94120 -14.55301 -14.25397 -13.98165 -13.72363 -13.54968 -13.31838 -13.07030 -12.98742 -12.65203 -12.49426 -12.17480 -12.08293 -11.98579 -11.56891 -11.28123 -11.10966 -11.02679 -10.88671 -10.60546 -10.52371 -10.32936 -10.27509 -10.06677 -10.04243 -9.79596 -9.78682 -9.05462 -8.98983 -8.81454 -8.72928 -7.03540 -5.84486 -3.14879 -0.03795 1.13878 1.52351 1.95201 2.90607 3.14461 3.19869 3.30675 3.37471 3.43604 3.45706 4.49704 4.59122 4.77523 4.91907 5.02827 5.11995 5.12666 5.18820 5.46111 5.51301 5.57875 5.65158 5.73904 5.81866 5.85891 5.92399 5.98187 6.04483 6.07419 6.08436 6.12706 6.22803 6.36126 6.41465 6.41620 6.57193 6.61509 6.77440 6.81711 6.92842 7.62506 7.64325 7.87025 8.29600 8.33038 9.45039 9.99775 10.35131 11.37624 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007040 B = 0.004473 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3976.318162 B = 6258.933949 C = 9438.264053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.123 4.123 5 C 0.136 3.864 6 H 0.095 0.905 7 C 0.143 3.857 8 N -0.732 5.732 9 C -0.244 4.244 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.701 5.701 18 C 0.584 3.416 19 O -0.516 6.516 20 C -0.210 4.210 21 C -0.081 4.081 22 C -0.062 4.062 23 C -0.253 4.253 24 C 0.598 3.402 25 N -0.849 5.849 26 O -0.531 6.531 27 S 0.203 5.797 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.036 0.964 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.400 0.600 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.402 0.598 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.649 -3.609 -9.990 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.196 4.196 4 C -0.162 4.162 5 C 0.032 3.968 6 H 0.113 0.887 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.375 4.375 10 H 0.089 0.911 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.352 5.352 18 C 0.369 3.631 19 O -0.394 6.394 20 C -0.332 4.332 21 C -0.114 4.114 22 C -0.096 4.096 23 C -0.374 4.374 24 C 0.383 3.617 25 N -0.412 5.412 26 O -0.409 6.409 27 S 0.472 5.528 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.054 0.946 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.235 0.765 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.231 0.769 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.668 -3.709 -9.448 16.233 hybrid contribution 0.973 -0.196 -0.162 1.005 sum -11.695 -3.905 -9.610 15.633 Atomic orbital electron populations 1.21864 0.96287 1.00963 1.01221 1.21152 0.94305 0.97294 0.98474 1.21837 1.03013 0.94922 0.99814 1.22035 0.94817 1.00734 0.98582 1.21471 0.94145 0.95571 0.85614 0.88709 1.20983 0.87075 0.97425 0.93012 1.42359 1.01411 1.76117 1.17783 1.19247 0.90463 1.33516 0.94265 0.91060 1.24743 0.96594 1.01942 0.97364 1.69673 1.08694 1.53529 1.25865 0.86138 0.79981 0.78457 0.81701 1.20538 1.21856 1.21834 1.45873 1.69060 1.13217 1.07047 1.16990 0.77460 0.86870 0.81819 1.90812 1.50045 1.14575 1.83957 1.25091 1.11816 0.97443 0.98875 1.20543 0.98971 1.01636 0.90234 1.20548 0.97296 0.89897 1.01880 1.24770 1.15886 0.98738 0.98043 1.17044 0.76149 0.82295 0.86228 1.43685 1.73344 1.10848 1.13360 1.90857 1.50496 1.85488 1.14067 1.84124 1.62060 1.03826 1.02762 0.93055 0.93193 0.93322 0.90799 0.94176 0.90574 0.93740 0.91875 0.90856 0.95775 0.94638 0.78023 0.93478 0.76463 0.82237 0.82512 0.76931 0.75877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.09 -1.20 2.38 -90.62 -0.22 -1.41 16 3 C -0.14 -1.87 8.03 37.16 0.30 -1.58 16 4 C -0.12 -1.56 4.36 -26.73 -0.12 -1.68 16 5 C 0.14 2.11 2.33 -67.93 -0.16 1.95 16 6 H 0.10 1.65 5.92 -51.93 -0.31 1.35 16 7 C 0.14 2.61 5.82 -4.04 -0.02 2.59 16 8 N -0.73 -17.26 5.43 -59.91 -0.33 -17.59 16 9 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 10 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 13 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 N -0.70 -10.50 4.46 -54.97 -0.25 -10.75 16 18 C 0.58 8.91 6.36 -12.63 -0.08 8.83 16 19 O -0.52 -8.69 11.77 5.26 0.06 -8.63 16 20 C -0.21 -2.81 6.46 -36.54 -0.24 -3.05 16 21 C -0.08 -0.98 9.88 -40.69 -0.40 -1.39 16 22 C -0.06 -0.72 9.88 -40.69 -0.40 -1.12 16 23 C -0.25 -2.97 6.46 -36.54 -0.24 -3.21 16 24 C 0.60 7.13 8.08 -12.64 -0.10 7.03 16 25 N -0.85 -6.91 8.87 30.37 0.27 -6.64 16 26 O -0.53 -8.04 17.65 5.25 0.09 -7.95 16 27 S 0.20 2.29 21.40 -107.50 -2.30 -0.01 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.05 5.19 -51.93 -0.27 0.78 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 1.19 4.75 -51.93 -0.25 0.95 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.39 9.76 7.33 -40.82 -0.30 9.46 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.40 5.81 7.71 -40.82 -0.31 5.50 16 42 H 0.16 1.78 8.04 -52.49 -0.42 1.35 16 43 H 0.16 1.61 8.04 -52.48 -0.42 1.19 16 44 H 0.40 2.61 7.93 -40.82 -0.32 2.29 16 45 H 0.41 2.58 8.93 -40.82 -0.36 2.22 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -32.33 381.50 -8.90 -41.23 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -6.32 Total: 15.66 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.58 Total: -1.26 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.42 Total: -61.36 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.15 Total: -16.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.30 Total: -0.01 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.33 -8.90 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715393625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.166 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds