Wall clock time and date at job start Tue Mar 31 2020 23:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47275 * 2 1 4 4 C 1.52999 * 109.46861 * 120.00241 * 2 1 3 5 5 C 1.53001 * 109.47068 * 174.99801 * 4 2 1 6 6 H 1.08999 * 109.46888 * 55.00203 * 5 4 2 7 7 C 1.53003 * 109.47014 * 174.99449 * 5 4 2 8 8 N 1.46499 * 109.46708 * 174.99880 * 7 5 4 9 9 C 1.36935 * 119.99926 * 180.02562 * 8 7 5 10 10 H 1.08005 * 119.99877 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00369 * 179.73019 * 9 8 7 12 12 N 1.31617 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47045 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99572 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99815 * 13 11 9 17 17 N 1.46491 * 109.46969 * 295.00053 * 5 4 2 18 18 C 1.34776 * 120.00153 * 84.99920 * 17 5 4 19 19 O 1.21620 * 119.99902 * 0.02562 * 18 17 5 20 20 C 1.47178 * 119.99790 * 179.97438 * 18 17 5 21 21 C 1.36614 * 125.15913 * 179.72137 * 20 18 17 22 22 C 1.36791 * 114.74192 * 179.78597 * 21 20 18 23 23 C 1.36617 * 114.74925 * 0.50075 * 22 21 20 24 24 C 1.47168 * 125.16453 * 179.70029 * 23 22 21 25 25 N 1.34775 * 119.99793 * 179.97438 * 24 23 22 26 26 O 1.21629 * 120.00046 * 0.02562 * 24 23 22 27 27 S 1.75832 * 125.16323 * 0.02562 * 20 18 17 28 28 H 1.09003 * 109.47087 * 299.99958 * 1 2 3 29 29 H 1.08997 * 109.46846 * 60.00112 * 1 2 3 30 30 H 1.08995 * 109.47524 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46739 * 239.99876 * 2 1 3 32 32 H 1.09003 * 109.47029 * 60.00006 * 3 2 1 33 33 H 1.09002 * 109.47417 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46940 * 300.00263 * 3 2 1 35 35 H 1.08995 * 109.47735 * 54.99753 * 4 2 1 36 36 H 1.09005 * 109.47269 * 294.99683 * 4 2 1 37 37 H 1.08998 * 109.46692 * 55.00382 * 7 5 4 38 38 H 1.08994 * 109.47584 * 295.00246 * 7 5 4 39 39 H 0.97005 * 120.00261 * 0.02562 * 8 7 5 40 40 H 0.97004 * 120.00382 * 180.02562 * 12 11 9 41 41 H 0.97006 * 119.99804 * 264.99213 * 17 5 4 42 42 H 1.08001 * 122.62991 * 0.02562 * 21 20 18 43 43 H 1.08004 * 122.63045 * 180.24995 * 22 21 20 44 44 H 0.96995 * 120.00493 * 0.02562 * 25 24 23 45 45 H 0.97003 * 119.99712 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8312 1.1880 6 1 3.9954 0.1610 1.0528 7 6 4.0851 -1.4395 2.4919 8 7 5.5303 -1.6552 2.3875 9 6 6.2198 -2.1948 3.4403 10 1 5.6982 -2.4611 4.3478 11 6 7.5883 -2.4045 3.3395 12 7 8.2231 -2.0850 2.2316 13 14 8.5288 -3.1413 4.7754 14 1 7.5913 -3.4107 5.8951 15 1 9.1687 -4.4115 4.3485 16 1 9.5742 -2.1868 5.2244 17 7 3.9478 -1.6872 0.0626 18 6 4.0651 -1.1631 -1.1735 19 8 3.8533 0.0208 -1.3546 20 6 4.4505 -2.0231 -2.3039 21 6 4.5946 -1.6056 -3.5967 22 6 4.9650 -2.5850 -4.4768 23 6 5.1202 -3.8237 -3.9218 24 6 5.5062 -5.0392 -4.6563 25 7 5.6300 -6.2111 -4.0021 26 8 5.7145 -4.9861 -5.8534 27 16 4.7879 -3.7454 -2.1970 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9562 -0.8899 35 1 1.6054 -1.7198 1.2952 36 1 1.7516 -0.1584 2.1370 37 1 3.5876 -2.3924 2.6721 38 1 3.8779 -0.7595 3.3182 39 1 5.9989 -1.4158 1.5726 40 1 9.1793 -2.2318 2.1609 41 1 4.1172 -2.6314 0.2072 42 1 4.4327 -0.5816 -3.8994 43 1 5.1187 -2.3950 -5.5288 44 1 5.4643 -6.2534 -3.0474 45 1 5.8848 -7.0122 -4.4862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715393625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:47 Heat of formation + Delta-G solvation = -64.800906 kcal Electronic energy + Delta-G solvation = -27354.869195 eV Core-core repulsion = 23497.902302 eV Total energy + Delta-G solvation = -3856.966893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 6.50 seconds Orbital eigenvalues (eV) -41.27997 -40.66990 -38.60591 -37.59525 -36.43835 -35.09044 -34.88504 -33.10470 -31.40571 -30.26721 -27.92967 -27.17870 -26.86147 -24.67573 -23.29208 -22.77072 -21.77378 -20.89066 -20.27424 -19.89082 -19.09587 -18.13669 -17.89103 -17.07766 -16.96644 -16.64151 -16.48315 -16.06254 -15.82720 -15.48414 -15.21089 -15.15685 -14.82225 -14.49940 -14.40199 -14.25119 -13.82148 -13.51597 -13.41994 -13.20235 -12.99878 -12.94012 -12.82012 -12.53659 -12.35127 -12.21354 -12.03897 -11.87762 -11.64697 -11.52755 -11.38415 -11.24155 -11.02008 -10.92626 -10.90691 -10.11996 -9.88438 -9.71051 -8.99330 -7.92488 -5.21856 -1.02855 0.18318 0.55717 0.96869 1.49311 1.51001 1.59979 1.92203 2.05084 2.18779 2.33054 2.57447 3.42323 3.58404 3.73370 3.81788 3.99742 4.07353 4.10030 4.25302 4.26557 4.38300 4.42376 4.67436 4.82207 4.83411 4.87610 4.91568 4.93095 4.94213 5.01521 5.12122 5.15290 5.18964 5.23420 5.41218 5.53275 5.56085 5.58882 5.67825 5.70561 6.14436 6.28070 6.45110 7.05679 7.11803 7.36015 8.08911 8.32611 9.30457 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007040 B = 0.004473 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3976.318162 B = 6258.933949 C = 9438.264053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C -0.135 4.135 4 C -0.114 4.114 5 C 0.146 3.854 6 H 0.072 0.928 7 C 0.143 3.857 8 N -0.743 5.743 9 C -0.241 4.241 10 H 0.079 0.921 11 C -0.070 4.070 12 N -0.967 5.967 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.293 1.293 16 H -0.300 1.300 17 N -0.701 5.701 18 C 0.582 3.418 19 O -0.537 6.537 20 C -0.241 4.241 21 C -0.073 4.073 22 C -0.067 4.067 23 C -0.256 4.256 24 C 0.597 3.403 25 N -0.829 5.829 26 O -0.568 6.568 27 S 0.241 5.759 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.403 0.597 42 H 0.165 0.835 43 H 0.168 0.832 44 H 0.412 0.588 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 -4.786 -9.168 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.192 4.192 4 C -0.153 4.153 5 C 0.041 3.959 6 H 0.090 0.910 7 C 0.016 3.984 8 N -0.386 5.386 9 C -0.373 4.373 10 H 0.097 0.903 11 C -0.262 4.262 12 N -0.617 5.617 13 Si 0.798 3.202 14 H -0.189 1.189 15 H -0.220 1.220 16 H -0.228 1.228 17 N -0.351 5.351 18 C 0.368 3.632 19 O -0.417 6.417 20 C -0.363 4.363 21 C -0.106 4.106 22 C -0.101 4.101 23 C -0.378 4.378 24 C 0.381 3.619 25 N -0.393 5.393 26 O -0.448 6.448 27 S 0.510 5.490 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.238 0.762 42 H 0.183 0.817 43 H 0.186 0.814 44 H 0.243 0.757 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -14.138 -4.931 -8.568 17.251 hybrid contribution 1.365 0.165 -0.411 1.435 sum -12.773 -4.765 -8.979 16.324 Atomic orbital electron populations 1.21806 0.94361 1.01798 1.01839 1.21091 0.95814 0.96359 0.97699 1.21773 1.01301 0.95832 1.00264 1.21979 0.92392 1.01803 0.99113 1.21293 0.95901 0.94149 0.84513 0.90998 1.21142 0.84317 0.98265 0.94629 1.42530 1.03507 1.75871 1.16694 1.19646 0.90804 1.31886 0.94930 0.90289 1.25478 0.97697 1.03411 0.99656 1.69825 1.08440 1.55616 1.27856 0.85149 0.78523 0.77155 0.79359 1.18926 1.22034 1.22752 1.45827 1.69169 1.13174 1.06961 1.17206 0.76957 0.86861 0.82176 1.90800 1.51027 1.15549 1.84338 1.25025 1.13803 0.98765 0.98703 1.20655 0.97994 1.02096 0.89887 1.20669 0.97286 0.89717 1.02410 1.24944 1.15366 0.98980 0.98516 1.17104 0.75966 0.83028 0.85807 1.43550 1.71635 1.10230 1.13881 1.90843 1.52421 1.86065 1.15512 1.83897 1.61188 1.01954 1.01940 0.92067 0.92985 0.92379 0.92399 0.93060 0.93147 0.93883 0.90430 0.89677 0.94181 0.94256 0.79374 0.94174 0.76218 0.81709 0.81416 0.75736 0.74560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.19 71.98 0.66 -2.06 16 2 C -0.09 -2.21 2.38 -10.79 -0.03 -2.24 16 3 C -0.13 -3.58 8.03 71.98 0.58 -3.00 16 4 C -0.11 -2.71 4.36 30.59 0.13 -2.57 16 5 C 0.15 4.43 2.33 44.99 0.10 4.54 16 6 H 0.07 2.56 5.92 -2.39 -0.01 2.54 16 7 C 0.14 5.06 5.82 86.38 0.50 5.56 16 8 N -0.74 -34.82 5.43 -343.46 -1.87 -36.69 16 9 C -0.24 -12.58 9.99 84.03 0.84 -11.74 16 10 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 11 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 12 N -0.97 -57.02 13.06 21.65 0.28 -56.73 16 13 Si 0.97 44.22 29.55 68.60 2.03 46.25 16 14 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 17 N -0.70 -20.82 4.46 -446.06 -1.99 -22.81 16 18 C 0.58 17.92 6.36 86.59 0.55 18.47 16 19 O -0.54 -18.56 11.77 -4.10 -0.05 -18.61 16 20 C -0.24 -6.40 6.46 24.24 0.16 -6.25 16 21 C -0.07 -1.76 9.88 21.55 0.21 -1.54 16 22 C -0.07 -1.51 9.88 21.55 0.21 -1.30 16 23 C -0.26 -5.78 6.46 24.24 0.16 -5.62 16 24 C 0.60 13.59 8.08 86.59 0.70 14.28 16 25 N -0.83 -12.12 8.87 -176.07 -1.56 -13.68 16 26 O -0.57 -16.87 17.65 -4.12 -0.07 -16.94 16 27 S 0.24 5.17 21.40 -56.49 -1.21 3.97 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.62 5.19 -2.39 -0.01 1.60 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.61 4.75 -2.39 -0.01 1.60 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.37 19.17 7.33 -92.70 -0.68 18.49 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.40 11.45 7.71 -92.70 -0.71 10.73 16 42 H 0.17 3.68 8.04 -2.91 -0.02 3.66 16 43 H 0.17 3.35 8.04 -2.91 -0.02 3.33 16 44 H 0.41 4.53 7.93 -92.71 -0.74 3.80 16 45 H 0.42 4.56 8.93 -92.71 -0.83 3.73 16 Total: -1.00 -69.08 381.50 -1.08 -70.16 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -1.89 Total: 41.91 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 5.25 Total: 3.17 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -5.14 Total: -129.91 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.12 Total: -35.55 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.21 Total: 3.97 kcal Total: -69.08 -1.08 -70.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715393625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.359 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.50 seconds