Wall clock time and date at job start Tue Mar 31 2020 23:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47055 * 2 1 4 4 C 1.52997 * 109.47256 * 119.99473 * 2 1 3 5 5 C 1.52997 * 109.47094 * 174.83864 * 4 2 1 6 6 H 1.08994 * 109.47412 * 54.19413 * 5 4 2 7 7 C 1.53003 * 109.47632 * 294.19054 * 5 4 2 8 8 N 1.46495 * 109.47397 * 184.99919 * 7 5 4 9 9 C 1.36935 * 120.00053 * 180.02562 * 8 7 5 10 10 H 1.08011 * 119.99755 * 0.02562 * 9 8 7 11 11 C 1.38812 * 120.00431 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99430 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00274 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47020 * 60.00100 * 13 11 9 15 15 H 1.48498 * 109.46727 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47078 * 300.00310 * 13 11 9 17 17 N 1.46498 * 109.47121 * 174.19575 * 5 4 2 18 18 C 1.34787 * 119.99826 * 272.11353 * 17 5 4 19 19 O 1.21624 * 119.99531 * 5.09497 * 18 17 5 20 20 C 1.47167 * 120.00079 * 185.09110 * 18 17 5 21 21 C 1.36607 * 125.16021 * 179.72293 * 20 18 17 22 22 C 1.36801 * 114.74268 * 179.78738 * 21 20 18 23 23 C 1.36607 * 114.74564 * 0.50409 * 22 21 20 24 24 C 1.47177 * 125.16536 * 179.69299 * 23 22 21 25 25 N 1.34771 * 120.00450 * 180.02562 * 24 23 22 26 26 O 1.21626 * 119.99619 * 0.02562 * 24 23 22 27 27 S 1.75834 * 125.16154 * 0.02572 * 20 18 17 28 28 H 1.09002 * 109.47242 * 300.00440 * 1 2 3 29 29 H 1.09005 * 109.47135 * 59.99913 * 1 2 3 30 30 H 1.09002 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47549 * 240.00276 * 2 1 3 32 32 H 1.09005 * 109.46704 * 305.52928 * 3 2 1 33 33 H 1.08995 * 109.47186 * 65.52985 * 3 2 1 34 34 H 1.08993 * 109.47252 * 185.53520 * 3 2 1 35 35 H 1.09004 * 109.46706 * 54.84500 * 4 2 1 36 36 H 1.08995 * 109.47511 * 294.84350 * 4 2 1 37 37 H 1.09009 * 109.46609 * 65.00044 * 7 5 4 38 38 H 1.09002 * 109.46962 * 305.00631 * 7 5 4 39 39 H 0.97001 * 119.99861 * 0.02562 * 8 7 5 40 40 H 0.97006 * 119.99848 * 179.97438 * 12 11 9 41 41 H 0.96995 * 120.00825 * 92.11170 * 17 5 4 42 42 H 1.07998 * 122.62967 * 359.97438 * 21 20 18 43 43 H 1.07998 * 122.62828 * 180.24581 * 22 21 20 44 44 H 0.97004 * 119.99642 * 359.97438 * 25 24 23 45 45 H 0.96997 * 120.00318 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5645 -0.8345 1.1860 6 1 3.9964 0.1548 1.0349 7 6 3.9604 -1.7469 0.0235 8 7 5.4110 -1.9514 0.0352 9 6 5.9993 -2.7381 -0.9188 10 1 5.3938 -3.2076 -1.6801 11 6 7.3737 -2.9324 -0.9074 12 7 8.1114 -2.3599 0.0201 13 14 8.1762 -4.0051 -2.2092 14 1 7.9053 -3.4373 -3.5544 15 1 9.6424 -4.0508 -1.9778 16 1 7.6190 -5.3793 -2.1306 17 7 4.0647 -1.3990 2.4419 18 6 4.3527 -0.5869 3.4784 19 8 4.1107 0.6027 3.4042 20 6 4.9600 -1.1396 4.6997 21 6 5.2991 -0.4150 5.8070 22 6 5.8469 -1.1469 6.8246 23 6 5.9757 -2.4817 6.5639 24 6 6.5397 -3.4759 7.4910 25 7 6.6180 -4.7706 7.1249 26 8 6.9352 -3.1290 8.5876 27 16 5.3662 -2.8316 4.9521 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.5980 1.9841 -0.8364 33 1 1.7598 1.9270 0.9353 34 1 3.1254 1.4442 -0.0991 35 1 1.6032 -1.7187 1.2967 36 1 1.7541 -0.1567 2.1368 37 1 3.6664 -1.2836 -0.9184 38 1 3.4570 -2.7081 0.1282 39 1 5.9547 -1.5295 0.7187 40 1 9.0719 -2.4958 0.0283 41 1 4.1886 -2.3572 2.5277 42 1 5.1440 0.6516 5.8749 43 1 6.1572 -0.7036 7.7592 44 1 6.3022 -5.0472 6.2504 45 1 6.9894 -5.4258 7.7361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715393626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:59 Heat of formation + Delta-G solvation = -47.538235 kcal Electronic energy + Delta-G solvation = -26988.131938 eV Core-core repulsion = 23131.913611 eV Total energy + Delta-G solvation = -3856.218327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.91212 -39.64526 -37.66981 -36.76282 -34.90770 -34.00108 -33.63131 -31.35938 -30.19220 -28.95216 -27.05600 -25.90221 -25.55652 -22.98917 -22.16889 -21.79517 -20.82905 -19.62473 -19.28694 -18.82293 -17.31068 -17.11554 -16.75886 -16.00217 -15.61637 -15.41379 -15.13544 -14.81292 -14.67802 -14.48266 -13.97853 -13.72015 -13.64988 -13.32014 -13.18180 -12.85363 -12.65257 -12.50153 -12.29870 -12.21855 -11.94555 -11.70442 -11.25943 -11.14266 -10.92047 -10.83845 -10.81977 -10.55104 -10.46986 -10.32607 -10.10250 -10.04889 -9.89003 -9.80333 -9.07981 -8.96540 -8.79776 -8.74187 -7.02521 -5.83429 -3.13847 -0.02405 1.15688 1.54073 1.96361 2.91902 3.14925 3.18383 3.30841 3.38411 3.43624 3.44505 4.51231 4.60482 4.75423 4.95278 5.01250 5.04444 5.06530 5.20531 5.34171 5.48632 5.50782 5.69753 5.72770 5.75251 5.80035 5.85893 5.92110 5.97231 6.05045 6.09916 6.13082 6.16784 6.29476 6.35028 6.43424 6.45050 6.53255 6.62814 6.81205 6.94555 7.61477 7.62276 7.88762 8.26014 8.33959 9.45788 10.00695 10.36085 11.38547 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007119 B = 0.004186 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.104057 B = 6686.633059 C = 9809.026198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.120 4.120 5 C 0.136 3.864 6 H 0.095 0.905 7 C 0.143 3.857 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.704 5.704 18 C 0.587 3.413 19 O -0.526 6.526 20 C -0.212 4.212 21 C -0.081 4.081 22 C -0.063 4.063 23 C -0.252 4.252 24 C 0.599 3.401 25 N -0.848 5.848 26 O -0.531 6.531 27 S 0.208 5.792 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.024 0.976 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.400 0.600 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.402 0.598 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 -1.141 10.149 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.159 4.159 5 C 0.032 3.968 6 H 0.113 0.887 7 C 0.015 3.985 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.354 5.354 18 C 0.372 3.628 19 O -0.404 6.404 20 C -0.334 4.334 21 C -0.113 4.113 22 C -0.097 4.097 23 C -0.374 4.374 24 C 0.383 3.617 25 N -0.412 5.412 26 O -0.409 6.409 27 S 0.477 5.523 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.235 0.765 42 H 0.177 0.823 43 H 0.175 0.825 44 H 0.231 0.769 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -11.437 -1.366 9.669 15.039 hybrid contribution 1.024 -0.139 0.095 1.038 sum -10.413 -1.506 9.764 14.354 Atomic orbital electron populations 1.21824 0.95501 1.01414 1.01423 1.21126 0.95314 0.96656 0.98436 1.21876 1.01659 0.95678 1.01340 1.21988 0.94845 1.00655 0.98418 1.21446 0.93368 0.99401 0.82604 0.88715 1.21037 0.87458 0.95571 0.94388 1.42346 1.00546 1.59431 1.35318 1.19151 0.90528 1.21942 1.05963 0.91185 1.24738 0.96250 1.00793 0.98791 1.69656 1.05262 1.47614 1.35249 0.86288 0.78420 0.80226 0.81330 1.21235 1.21689 1.21255 1.45865 1.65913 1.10404 1.13210 1.17015 0.77960 0.86169 0.81690 1.90800 1.53511 1.14872 1.81234 1.25040 1.10524 0.97430 1.00407 1.20547 0.97981 1.02087 0.90719 1.20539 0.97459 0.91110 1.00547 1.24781 1.13929 0.98859 0.99860 1.17038 0.77346 0.81882 0.85427 1.43683 1.66899 1.08859 1.21784 1.90855 1.48537 1.79908 1.21608 1.84122 1.54745 1.05794 1.07608 0.92979 0.92864 0.92873 0.90394 0.93093 0.92738 0.92113 0.91809 0.91525 0.94396 0.95852 0.78074 0.93380 0.76482 0.82253 0.82472 0.76922 0.75875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.10 -1.16 2.80 -90.62 -0.25 -1.41 16 3 C -0.15 -1.85 8.82 37.16 0.33 -1.52 16 4 C -0.12 -1.57 4.46 -26.73 -0.12 -1.68 16 5 C 0.14 2.16 2.08 -67.93 -0.14 2.02 16 6 H 0.09 1.71 5.86 -51.93 -0.30 1.41 16 7 C 0.14 2.64 5.49 -4.04 -0.02 2.62 16 8 N -0.73 -17.35 5.43 -59.90 -0.33 -17.67 16 9 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 10 H 0.07 1.80 7.83 -52.48 -0.41 1.38 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -27.12 13.06 55.49 0.72 -26.40 16 13 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 17 N -0.70 -10.96 4.48 -54.96 -0.25 -11.21 16 18 C 0.59 9.55 7.78 -12.63 -0.10 9.45 16 19 O -0.53 -9.81 16.48 5.26 0.09 -9.73 16 20 C -0.21 -2.97 6.46 -36.55 -0.24 -3.21 16 21 C -0.08 -1.02 9.88 -40.69 -0.40 -1.42 16 22 C -0.06 -0.75 9.88 -40.69 -0.40 -1.15 16 23 C -0.25 -3.06 6.46 -36.54 -0.24 -3.30 16 24 C 0.60 7.30 8.08 -12.63 -0.10 7.20 16 25 N -0.85 -7.14 8.87 30.37 0.27 -6.87 16 26 O -0.53 -8.16 17.65 5.25 0.09 -8.07 16 27 S 0.21 2.44 21.41 -107.50 -2.30 0.14 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.98 6.48 -51.93 -0.34 0.65 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.85 6.72 -51.93 -0.35 0.50 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.04 0.70 6.72 -51.92 -0.35 0.35 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.39 9.83 7.33 -40.82 -0.30 9.53 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.40 5.89 7.75 -40.82 -0.32 5.58 16 42 H 0.16 1.86 8.04 -52.49 -0.42 1.44 16 43 H 0.16 1.66 8.04 -52.49 -0.42 1.24 16 44 H 0.40 2.74 7.93 -40.82 -0.32 2.41 16 45 H 0.41 2.68 8.93 -40.82 -0.36 2.31 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -33.03 390.20 -8.85 -41.87 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -6.41 Total: 15.99 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.59 Total: -0.51 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.42 Total: -62.16 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.18 Total: -17.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.30 Total: 0.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.03 -8.85 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715393626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.665 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds