Wall clock time and date at job start Wed Apr 1 2020 00:15:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47164 * 2 1
4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3
5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1
6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1
7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2
8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4
9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6
10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6
11 11 N 1.46505 * 109.46805 * 179.97438 * 10 8 7
12 12 C 1.34776 * 119.99872 * 180.02562 * 11 10 8
13 13 O 1.21705 * 120.00385 * 359.97438 * 12 11 10
14 14 C 1.46589 * 119.99811 * 180.02562 * 12 11 10
15 15 C 1.36646 * 125.45401 * 180.02562 * 14 12 11
16 16 C 1.37475 * 113.29637 * 179.97438 * 15 14 12
17 17 C 1.33825 * 115.09839 * 359.97438 * 16 15 14
18 18 S 1.70616 * 110.95347 * 359.72857 * 17 16 15
19 19 N 1.46505 * 109.47130 * 179.97438 * 4 2 1
20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2
21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4
22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4
23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19
24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19
25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20
26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20
27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20
28 28 H 1.09000 * 109.46863 * 299.99348 * 1 2 3
29 29 H 1.08994 * 109.47323 * 60.00002 * 1 2 3
30 30 H 1.08998 * 109.47238 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47096 * 239.99921 * 2 1 3
32 32 H 1.09003 * 109.47086 * 180.02562 * 3 2 1
33 33 H 1.08994 * 109.46999 * 300.00196 * 3 2 1
34 34 H 1.09000 * 109.46698 * 60.00552 * 3 2 1
35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2
36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2
37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4
38 38 H 1.09000 * 109.47726 * 299.99386 * 10 8 7
39 39 H 1.08998 * 109.47231 * 60.00064 * 10 8 7
40 40 H 0.96997 * 120.00059 * 359.97438 * 11 10 8
41 41 H 1.08007 * 123.35685 * 359.97438 * 15 14 12
42 42 H 1.07997 * 122.45176 * 180.02562 * 16 15 14
43 43 H 1.08000 * 124.51960 * 180.02562 * 17 16 15
44 44 H 0.97000 * 119.99792 * 264.99726 * 19 4 2
45 45 H 0.97005 * 119.99715 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6767 -0.2076 2.1392
6 6 1.5300 -2.1638 1.2491
7 7 2.1141 -2.8884 2.3806
8 6 1.8060 -4.1849 2.5819
9 8 1.0449 -4.7517 1.8268
10 6 2.4073 -4.9302 3.7455
11 7 1.9189 -6.3115 3.7455
12 6 2.3254 -7.1700 4.7016
13 8 3.0985 -6.7980 5.5648
14 6 1.8371 -8.5521 4.7013
15 6 2.1744 -9.5121 5.6133
16 6 1.5699 -10.7238 5.3761
17 6 0.7648 -10.7570 4.3076
18 16 0.7165 -9.2378 3.5327
19 7 3.5050 -0.7218 1.2488
20 6 4.1901 0.3528 1.7498
21 1 3.6506 1.2005 2.1454
22 6 5.5783 0.3498 1.7547
23 7 6.2359 -0.6835 1.2730
24 14 6.5130 1.8124 2.4451
25 1 6.7549 1.6054 3.8956
26 1 7.8133 1.9462 1.7406
27 1 5.7137 3.0484 2.2480
28 1 -0.3633 0.5137 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 3.1300 1.4425 -0.0005
33 1 1.6766 1.9563 -0.8899
34 1 1.6767 1.9562 0.8900
35 1 0.4436 -2.1651 1.3387
36 1 1.8183 -2.6512 0.3177
37 1 2.7232 -2.4351 2.9844
38 1 3.4936 -4.9287 3.6558
39 1 2.1190 -4.4433 4.6770
40 1 1.3024 -6.6079 3.0578
41 1 2.8488 -9.3365 6.4386
42 1 1.7323 -11.5857 6.0063
43 1 0.2150 -11.6278 3.9824
44 1 3.9897 -1.4834 0.8938
45 1 7.2059 -0.6854 1.2761
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715713977.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:15:20
Heat of formation + Delta-G solvation = -37.051429 kcal
Electronic energy + Delta-G solvation = -26410.312187 eV
Core-core repulsion = 22554.548602 eV
Total energy + Delta-G solvation = -3855.763585 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.21783 -39.27028 -37.73881 -37.29218 -34.60013 -33.98593 -33.16267 -30.72967
-30.35248 -28.83394 -27.22473 -26.10361 -24.94168 -23.68438 -22.04523 -21.40034
-20.47106 -19.76123 -19.30993 -18.91684 -17.39321 -16.69929 -16.49704 -15.97917
-15.89044 -15.59881 -15.22053 -14.85446 -14.70068 -14.02110 -13.87804 -13.65430
-13.44748 -13.31117 -13.19400 -13.06184 -12.85166 -12.59397 -12.55321 -12.12491
-12.06525 -11.66801 -11.26549 -11.11411 -10.99306 -10.84247 -10.70555 -10.35023
-10.30933 -10.13425 -10.03272 -9.81740 -9.58173 -9.42793 -9.13599 -8.96564
-8.91142 -8.76955 -7.07900 -5.85798 -3.15419 0.21266 1.16476 1.57570
2.10672 2.67448 2.73864 3.01514 3.37684 3.43873 3.45598 3.54071
4.50622 4.55599 4.67354 4.85655 4.98442 5.16018 5.26453 5.29481
5.33006 5.39196 5.48598 5.58453 5.63370 5.70428 5.83292 5.85248
5.93298 5.99815 6.06659 6.13917 6.19097 6.32923 6.38865 6.48281
6.57760 6.59351 6.80968 7.02142 7.26023 7.26351 7.63270 7.70583
7.96137 8.30449 8.32473 9.43556 9.97187 10.32956 11.35851
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.014373 B = 0.002331 C = 0.002059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1947.593720 B =12006.642337 C =13596.439411
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.109 4.109
3 C -0.139 4.139
4 C 0.169 3.831
5 H 0.054 0.946
6 C 0.113 3.887
7 N -0.703 5.703
8 C 0.507 3.493
9 O -0.554 6.554
10 C 0.099 3.901
11 N -0.712 5.712
12 C 0.592 3.408
13 O -0.528 6.528
14 C -0.265 4.265
15 C -0.056 4.056
16 C -0.151 4.151
17 C -0.233 4.233
18 S 0.211 5.789
19 N -0.721 5.721
20 C -0.239 4.239
21 H 0.073 0.927
22 C -0.010 4.010
23 N -0.928 5.928
24 Si 0.903 3.097
25 H -0.290 1.290
26 H -0.292 1.292
27 H -0.282 1.282
28 H 0.049 0.951
29 H 0.045 0.955
30 H 0.050 0.950
31 H 0.063 0.937
32 H 0.087 0.913
33 H 0.031 0.969
34 H 0.040 0.960
35 H 0.068 0.932
36 H 0.065 0.935
37 H 0.414 0.586
38 H 0.106 0.894
39 H 0.102 0.898
40 H 0.409 0.591
41 H 0.155 0.845
42 H 0.146 0.854
43 H 0.169 0.831
44 H 0.385 0.615
45 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.273 -15.734 4.362 21.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.131 4.131
3 C -0.197 4.197
4 C 0.059 3.941
5 H 0.072 0.928
6 C -0.011 4.011
7 N -0.354 5.354
8 C 0.292 3.708
9 O -0.434 6.434
10 C -0.028 4.028
11 N -0.367 5.367
12 C 0.378 3.622
13 O -0.406 6.406
14 C -0.386 4.386
15 C -0.089 4.089
16 C -0.182 4.182
17 C -0.371 4.371
18 S 0.478 5.522
19 N -0.363 5.363
20 C -0.370 4.370
21 H 0.091 0.909
22 C -0.206 4.206
23 N -0.576 5.576
24 Si 0.734 3.266
25 H -0.217 1.217
26 H -0.219 1.219
27 H -0.207 1.207
28 H 0.068 0.932
29 H 0.065 0.935
30 H 0.069 0.931
31 H 0.081 0.919
32 H 0.105 0.895
33 H 0.050 0.950
34 H 0.060 0.940
35 H 0.086 0.914
36 H 0.083 0.917
37 H 0.251 0.749
38 H 0.124 0.876
39 H 0.120 0.880
40 H 0.247 0.753
41 H 0.172 0.828
42 H 0.163 0.837
43 H 0.187 0.813
44 H 0.219 0.781
45 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -13.946 -15.098 3.216 20.804
hybrid contribution 1.493 -0.019 1.344 2.009
sum -12.453 -15.117 4.561 20.110
Atomic orbital electron populations
1.21943 0.96860 1.00922 1.00979 1.21730 0.93522 0.97848 1.00005
1.21817 1.04246 0.94576 0.99015 1.20557 0.86462 0.90973 0.96133
0.92761 1.21801 0.97344 0.93324 0.88612 1.45893 1.48133 1.10396
1.30985 1.20341 0.81643 0.82783 0.86057 1.90656 1.37147 1.67858
1.47702 1.21131 1.01125 0.82092 0.98435 1.45535 1.49488 1.10788
1.30879 1.16885 0.80691 0.83265 0.81409 1.90859 1.34886 1.77562
1.37303 1.24602 1.10125 0.98885 1.04954 1.20824 0.98676 0.90925
0.98512 1.20059 0.99853 0.99048 0.99265 1.25387 1.06233 1.03588
1.01875 1.83279 1.40123 1.01257 1.27522 1.42462 0.98674 1.21275
1.73874 1.19178 0.88745 0.96440 1.32618 0.90891 1.24738 0.96505
0.97719 1.01670 1.69653 1.07003 1.29836 1.51111 0.86266 0.79590
0.82214 0.78546 1.21707 1.21871 1.20748 0.93170 0.93544 0.93080
0.91885 0.89463 0.94992 0.94049 0.91370 0.91672 0.74890 0.87566
0.88008 0.75321 0.82762 0.83671 0.81345 0.78102 0.93429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.99 8.84 37.16 0.33 -1.66 16
2 C -0.11 -1.78 2.69 -90.62 -0.24 -2.02 16
3 C -0.14 -2.42 8.26 37.16 0.31 -2.11 16
4 C 0.17 2.93 2.18 -67.93 -0.15 2.79 16
5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16
6 C 0.11 1.78 4.73 -4.04 -0.02 1.76 16
7 N -0.70 -10.64 5.39 -60.29 -0.32 -10.97 16
8 C 0.51 7.54 7.90 -10.99 -0.09 7.45 16
9 O -0.55 -9.42 15.67 5.56 0.09 -9.33 16
10 C 0.10 1.30 6.15 -5.19 -0.03 1.27 16
11 N -0.71 -9.21 5.52 -62.83 -0.35 -9.56 16
12 C 0.59 8.11 7.78 -12.89 -0.10 8.01 16
13 O -0.53 -8.80 16.84 5.18 0.09 -8.71 16
14 C -0.27 -2.97 6.45 -36.79 -0.24 -3.21 16
15 C -0.06 -0.55 10.01 -40.44 -0.40 -0.95 16
16 C -0.15 -1.15 10.15 -41.41 -0.42 -1.57 16
17 C -0.23 -1.65 10.92 29.18 0.32 -1.33 16
18 S 0.21 1.80 22.16 -107.50 -2.38 -0.58 16
19 N -0.72 -15.66 4.44 -53.42 -0.24 -15.89 16
20 C -0.24 -5.85 7.57 -15.06 -0.11 -5.97 16
21 H 0.07 1.76 7.40 -52.49 -0.39 1.37 16
22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16
23 N -0.93 -26.20 13.06 55.49 0.72 -25.47 16
24 Si 0.90 21.20 29.55 -169.99 -5.02 16.18 16
25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.05 0.64 6.55 -51.93 -0.34 0.30 16
31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
32 H 0.09 1.81 6.01 -51.93 -0.31 1.50 16
33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.07 1.00 6.71 -51.92 -0.35 0.65 16
36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
37 H 0.41 6.37 8.14 -40.82 -0.33 6.04 16
38 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16
39 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16
40 H 0.41 5.04 6.55 -40.82 -0.27 4.78 16
41 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16
42 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16
43 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16
44 H 0.38 9.21 7.80 -40.82 -0.32 8.89 16
45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
LS Contribution 387.93 15.07 5.85 5.85
Total: -1.00 -30.15 387.93 -9.03 -39.18
By element:
Atomic # 1 Polarization: 23.73 SS G_CDS: -6.51 Total: 17.22 kcal
Atomic # 6 Polarization: 3.04 SS G_CDS: -0.95 Total: 2.09 kcal
Atomic # 7 Polarization: -61.70 SS G_CDS: -0.18 Total: -61.89 kcal
Atomic # 8 Polarization: -18.22 SS G_CDS: 0.17 Total: -18.04 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal
Atomic # 16 Polarization: 1.80 SS G_CDS: -2.38 Total: -0.58 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -30.15 -9.03 -39.18 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715713977.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.125 kcal
(2) G-P(sol) polarization free energy of solvation -30.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.051 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds