Wall clock time and date at job start Wed Apr 1 2020 00:15:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52998 * 109.47164 * 2 1
4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3
5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1
6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1
7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2
8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4
9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6
10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6
11 11 N 1.46505 * 109.46805 * 179.97438 * 10 8 7
12 12 C 1.34776 * 119.99872 * 180.02562 * 11 10 8
13 13 O 1.21705 * 120.00385 * 359.97438 * 12 11 10
14 14 C 1.46589 * 119.99811 * 180.02562 * 12 11 10
15 15 C 1.36646 * 125.45401 * 180.02562 * 14 12 11
16 16 C 1.37475 * 113.29637 * 179.97438 * 15 14 12
17 17 C 1.33825 * 115.09839 * 359.97438 * 16 15 14
18 18 S 1.70616 * 110.95347 * 359.72857 * 17 16 15
19 19 N 1.46505 * 109.47130 * 179.97438 * 4 2 1
20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2
21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4
22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4
23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19
24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19
25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20
26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20
27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20
28 28 H 1.09000 * 109.46863 * 299.99348 * 1 2 3
29 29 H 1.08994 * 109.47323 * 60.00002 * 1 2 3
30 30 H 1.08998 * 109.47238 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47096 * 239.99921 * 2 1 3
32 32 H 1.09003 * 109.47086 * 180.02562 * 3 2 1
33 33 H 1.08994 * 109.46999 * 300.00196 * 3 2 1
34 34 H 1.09000 * 109.46698 * 60.00552 * 3 2 1
35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2
36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2
37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4
38 38 H 1.09000 * 109.47726 * 299.99386 * 10 8 7
39 39 H 1.08998 * 109.47231 * 60.00064 * 10 8 7
40 40 H 0.96997 * 120.00059 * 359.97438 * 11 10 8
41 41 H 1.08007 * 123.35685 * 359.97438 * 15 14 12
42 42 H 1.07997 * 122.45176 * 180.02562 * 16 15 14
43 43 H 1.08000 * 124.51960 * 180.02562 * 17 16 15
44 44 H 0.97000 * 119.99792 * 264.99726 * 19 4 2
45 45 H 0.97005 * 119.99715 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6767 -0.2076 2.1392
6 6 1.5300 -2.1638 1.2491
7 7 2.1141 -2.8884 2.3806
8 6 1.8060 -4.1849 2.5819
9 8 1.0449 -4.7517 1.8268
10 6 2.4073 -4.9302 3.7455
11 7 1.9189 -6.3115 3.7455
12 6 2.3254 -7.1700 4.7016
13 8 3.0985 -6.7980 5.5648
14 6 1.8371 -8.5521 4.7013
15 6 2.1744 -9.5121 5.6133
16 6 1.5699 -10.7238 5.3761
17 6 0.7648 -10.7570 4.3076
18 16 0.7165 -9.2378 3.5327
19 7 3.5050 -0.7218 1.2488
20 6 4.1901 0.3528 1.7498
21 1 3.6506 1.2005 2.1454
22 6 5.5783 0.3498 1.7547
23 7 6.2359 -0.6835 1.2730
24 14 6.5130 1.8124 2.4451
25 1 6.7549 1.6054 3.8956
26 1 7.8133 1.9462 1.7406
27 1 5.7137 3.0484 2.2480
28 1 -0.3633 0.5137 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0276 -0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 3.1300 1.4425 -0.0005
33 1 1.6766 1.9563 -0.8899
34 1 1.6767 1.9562 0.8900
35 1 0.4436 -2.1651 1.3387
36 1 1.8183 -2.6512 0.3177
37 1 2.7232 -2.4351 2.9844
38 1 3.4936 -4.9287 3.6558
39 1 2.1190 -4.4433 4.6770
40 1 1.3024 -6.6079 3.0578
41 1 2.8488 -9.3365 6.4386
42 1 1.7323 -11.5857 6.0063
43 1 0.2150 -11.6278 3.9824
44 1 3.9897 -1.4834 0.8938
45 1 7.2059 -0.6854 1.2761
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001715713977.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:15:09
Heat of formation + Delta-G solvation = -58.055215 kcal
Electronic energy + Delta-G solvation = -26411.222979 eV
Core-core repulsion = 22554.548602 eV
Total energy + Delta-G solvation = -3856.674378 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 11.53 seconds
Orbital eigenvalues (eV)
-41.35235 -40.41969 -38.81347 -38.38108 -35.73742 -35.29795 -34.90653 -32.23475
-31.41790 -30.08262 -28.41447 -27.40220 -25.87622 -25.28109 -23.40223 -22.39887
-21.69404 -20.86721 -20.39440 -19.82549 -19.13530 -17.82889 -17.64587 -17.17046
-16.86164 -16.69348 -16.66206 -16.02423 -15.82674 -15.63771 -15.13264 -14.91759
-14.86432 -14.52427 -14.29615 -14.02861 -13.80180 -13.69113 -13.47430 -13.39618
-13.23287 -12.88914 -12.85700 -12.68907 -12.43369 -12.27792 -12.00689 -11.93222
-11.75513 -11.44324 -11.39105 -11.27065 -11.12529 -10.79913 -10.49414 -10.06345
-9.86866 -9.55746 -8.94584 -7.87057 -5.13452 -0.52189 0.47165 0.93406
1.37722 1.45868 1.50203 1.52007 1.58257 1.67071 2.08698 2.38649
2.60484 3.45984 3.56750 3.76055 3.88632 3.94480 4.14002 4.23095
4.31360 4.32064 4.33915 4.34743 4.48786 4.54739 4.65749 4.78441
4.94556 4.98971 5.01222 5.03880 5.08968 5.17866 5.20874 5.28016
5.32601 5.36058 5.49544 5.61993 5.67475 5.78989 6.24168 6.33459
6.45451 6.92327 7.06883 7.41889 8.13591 8.37856 9.35679
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.014373 B = 0.002331 C = 0.002059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1947.593720 B =12006.642337 C =13596.439411
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.106 4.106
3 C -0.135 4.135
4 C 0.170 3.830
5 H 0.059 0.941
6 C 0.122 3.878
7 N -0.703 5.703
8 C 0.512 3.488
9 O -0.573 6.573
10 C 0.103 3.897
11 N -0.709 5.709
12 C 0.591 3.409
13 O -0.568 6.568
14 C -0.306 4.306
15 C -0.054 4.054
16 C -0.159 4.159
17 C -0.214 4.214
18 S 0.224 5.776
19 N -0.727 5.727
20 C -0.212 4.212
21 H 0.080 0.920
22 C -0.072 4.072
23 N -0.967 5.967
24 Si 0.956 3.044
25 H -0.292 1.292
26 H -0.306 1.306
27 H -0.271 1.271
28 H 0.059 0.941
29 H 0.059 0.941
30 H 0.060 0.940
31 H 0.051 0.949
32 H 0.048 0.952
33 H 0.049 0.951
34 H 0.046 0.954
35 H 0.087 0.913
36 H 0.053 0.947
37 H 0.414 0.586
38 H 0.103 0.897
39 H 0.115 0.885
40 H 0.412 0.588
41 H 0.151 0.849
42 H 0.173 0.827
43 H 0.202 0.798
44 H 0.373 0.627
45 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.764 -16.610 4.525 23.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.128 4.128
3 C -0.193 4.193
4 C 0.062 3.938
5 H 0.076 0.924
6 C -0.002 4.002
7 N -0.353 5.353
8 C 0.298 3.702
9 O -0.454 6.454
10 C -0.024 4.024
11 N -0.363 5.363
12 C 0.379 3.621
13 O -0.450 6.450
14 C -0.426 4.426
15 C -0.088 4.088
16 C -0.189 4.189
17 C -0.352 4.352
18 S 0.491 5.509
19 N -0.367 5.367
20 C -0.344 4.344
21 H 0.097 0.903
22 C -0.265 4.265
23 N -0.618 5.618
24 Si 0.787 3.213
25 H -0.219 1.219
26 H -0.233 1.233
27 H -0.196 1.196
28 H 0.078 0.922
29 H 0.078 0.922
30 H 0.079 0.921
31 H 0.069 0.931
32 H 0.067 0.933
33 H 0.068 0.932
34 H 0.065 0.935
35 H 0.105 0.895
36 H 0.071 0.929
37 H 0.250 0.750
38 H 0.121 0.879
39 H 0.133 0.867
40 H 0.251 0.749
41 H 0.169 0.831
42 H 0.190 0.810
43 H 0.219 0.781
44 H 0.205 0.795
45 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -16.509 -15.949 3.369 23.200
hybrid contribution 2.122 0.191 1.254 2.472
sum -14.387 -15.758 4.623 21.832
Atomic orbital electron populations
1.21851 0.93883 1.01982 1.02126 1.21624 0.95941 0.96699 0.98506
1.21736 1.01655 0.95646 1.00237 1.20717 0.83873 0.92386 0.96860
0.92352 1.21690 0.98242 0.91932 0.88317 1.45875 1.48089 1.10592
1.30788 1.20506 0.81119 0.82496 0.86050 1.90643 1.38095 1.68167
1.48488 1.21096 1.00762 0.82332 0.98216 1.45525 1.49353 1.10606
1.30858 1.17255 0.79971 0.84234 0.80672 1.90822 1.36800 1.78562
1.38772 1.24482 1.12741 0.98045 1.07328 1.21060 0.98225 0.91641
0.97918 1.20282 0.99719 0.98933 0.99985 1.25833 1.05052 1.03652
1.00690 1.83222 1.38984 1.02000 1.26719 1.42577 1.00561 1.20096
1.73467 1.19451 0.88697 0.96582 1.29633 0.90261 1.25335 0.97670
0.99784 1.03663 1.69791 1.06341 1.31704 1.53984 0.85396 0.78010
0.80427 0.77485 1.21911 1.23330 1.19611 0.92232 0.92229 0.92093
0.93093 0.93271 0.93159 0.93486 0.89481 0.92854 0.74978 0.87936
0.86701 0.74918 0.83141 0.81003 0.78108 0.79531 0.94511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.31 8.84 71.98 0.64 -2.67 16
2 C -0.11 -3.27 2.69 -10.80 -0.03 -3.30 16
3 C -0.14 -4.50 8.26 71.98 0.59 -3.90 16
4 C 0.17 5.71 2.18 44.99 0.10 5.81 16
5 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16
6 C 0.12 3.69 4.73 86.38 0.41 4.10 16
7 N -0.70 -20.89 5.39 -463.05 -2.49 -23.39 16
8 C 0.51 15.03 7.90 87.66 0.69 15.72 16
9 O -0.57 -19.07 15.67 -3.02 -0.05 -19.12 16
10 C 0.10 2.71 6.15 85.63 0.53 3.24 16
11 N -0.71 -18.50 5.52 -470.89 -2.60 -21.10 16
12 C 0.59 16.57 7.78 86.42 0.67 17.24 16
13 O -0.57 -19.64 16.84 -4.36 -0.07 -19.71 16
14 C -0.31 -6.80 6.45 24.08 0.16 -6.64 16
15 C -0.05 -1.02 10.01 21.72 0.22 -0.80 16
16 C -0.16 -2.04 10.15 21.09 0.21 -1.83 16
17 C -0.21 -2.39 10.92 66.82 0.73 -1.66 16
18 S 0.22 3.47 22.16 -56.49 -1.25 2.22 16
19 N -0.73 -31.60 4.44 -322.93 -1.43 -33.03 16
20 C -0.21 -10.35 7.57 84.04 0.64 -9.72 16
21 H 0.08 3.74 7.40 -2.91 -0.02 3.72 16
22 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16
23 N -0.97 -56.08 13.06 21.65 0.28 -55.80 16
24 Si 0.96 44.22 29.55 68.60 2.03 46.25 16
25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16
26 H -0.31 -14.72 7.11 99.48 0.71 -14.02 16
27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
30 H 0.06 1.33 6.55 -2.39 -0.02 1.31 16
31 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16
32 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16
33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
35 H 0.09 2.34 6.71 -2.38 -0.02 2.32 16
36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
37 H 0.41 12.62 8.14 -92.71 -0.75 11.87 16
38 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16
39 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16
40 H 0.41 10.14 6.55 -92.71 -0.61 9.53 16
41 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16
42 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16
43 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16
44 H 0.37 18.15 7.80 -92.71 -0.72 17.43 16
45 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16
Total: -1.00 -65.93 387.93 -0.62 -66.55
By element:
Atomic # 1 Polarization: 46.00 SS G_CDS: -1.05 Total: 44.95 kcal
Atomic # 6 Polarization: 6.15 SS G_CDS: 6.02 Total: 12.17 kcal
Atomic # 7 Polarization: -127.07 SS G_CDS: -6.25 Total: -133.32 kcal
Atomic # 8 Polarization: -38.71 SS G_CDS: -0.12 Total: -38.83 kcal
Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal
Atomic # 16 Polarization: 3.47 SS G_CDS: -1.25 Total: 2.22 kcal
Total: -65.93 -0.62 -66.55 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715713977.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.498 kcal
(2) G-P(sol) polarization free energy of solvation -65.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.436 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.553 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 11.53 seconds