Wall clock time and date at job start Wed Apr 1 2020 00:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47451 * 2 1 4 4 C 1.53003 * 109.47015 * 119.99958 * 2 1 3 5 5 H 1.09000 * 109.46883 * 300.00034 * 4 2 1 6 6 C 1.52993 * 109.47495 * 179.97438 * 4 2 1 7 7 N 1.46496 * 109.47551 * 184.99999 * 6 4 2 8 8 C 1.34777 * 120.00258 * 180.02562 * 7 6 4 9 9 O 1.21279 * 120.00166 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99762 * 179.97438 * 8 7 6 11 11 N 1.46500 * 109.46949 * 179.97438 * 10 8 7 12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 8 13 13 O 1.21701 * 119.99994 * 359.97438 * 12 11 10 14 14 C 1.46586 * 120.00255 * 179.97438 * 12 11 10 15 15 C 1.36647 * 125.45967 * 179.97438 * 14 12 11 16 16 C 1.37474 * 113.29921 * 180.02562 * 15 14 12 17 17 C 1.33811 * 115.09779 * 0.02562 * 16 15 14 18 18 S 1.70620 * 110.95635 * 359.72594 * 17 16 15 19 19 N 1.46499 * 109.47427 * 59.99615 * 4 2 1 20 20 C 1.36938 * 120.00054 * 275.00873 * 19 4 2 21 21 H 1.08003 * 120.00114 * 359.97438 * 20 19 4 22 22 C 1.38815 * 120.00272 * 180.02562 * 20 19 4 23 23 N 1.31616 * 119.99558 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00137 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47329 * 89.99664 * 24 22 20 26 26 H 1.48507 * 109.46943 * 209.99512 * 24 22 20 27 27 H 1.48497 * 109.47591 * 329.99530 * 24 22 20 28 28 H 1.08996 * 109.46885 * 300.00449 * 1 2 3 29 29 H 1.09000 * 109.46738 * 60.00231 * 1 2 3 30 30 H 1.08994 * 109.47465 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47565 * 239.99250 * 2 1 3 32 32 H 1.09001 * 109.46954 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46961 * 299.99633 * 3 2 1 34 34 H 1.08996 * 109.47443 * 59.99892 * 3 2 1 35 35 H 1.09000 * 109.47250 * 64.99777 * 6 4 2 36 36 H 1.09004 * 109.46862 * 304.99800 * 6 4 2 37 37 H 0.96999 * 119.99694 * 359.97438 * 7 6 4 38 38 H 1.09000 * 109.47318 * 299.99141 * 10 8 7 39 39 H 1.09000 * 109.47161 * 59.99772 * 10 8 7 40 40 H 0.97010 * 119.99909 * 359.97438 * 11 10 8 41 41 H 1.08005 * 123.34844 * 359.97438 * 15 14 12 42 42 H 1.07997 * 122.45233 * 180.02562 * 16 15 14 43 43 H 1.08004 * 124.52091 * 180.02562 * 17 16 15 44 44 H 0.96999 * 120.00202 * 94.99638 * 19 4 2 45 45 H 0.97003 * 120.00024 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5699 -0.7219 1.2491 7 7 4.0582 -1.5141 2.3805 8 6 5.3832 -1.6554 2.5823 9 8 6.1714 -1.1271 1.8270 10 6 5.8854 -2.4699 3.7466 11 7 7.3504 -2.4706 3.7463 12 6 8.0242 -3.1402 4.7023 13 8 7.4156 -3.7440 5.5662 14 6 9.4900 -3.1414 4.7017 15 6 10.2826 -3.7796 5.6137 16 6 11.6265 -3.6143 5.3761 17 6 11.9263 -2.8666 4.3076 18 16 10.5101 -2.3264 3.5241 19 7 1.5516 -2.1025 1.2494 20 6 0.3100 -2.3896 1.7505 21 1 -0.3091 -1.5979 2.1460 22 6 -0.1526 -3.6984 1.7511 23 7 0.6020 -4.6633 1.2696 24 14 -1.8460 -4.0902 2.4353 25 1 -2.8529 -3.9973 1.3478 26 1 -1.8476 -5.4657 2.9951 27 1 -2.1838 -3.1193 3.5069 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 3.9337 0.3017 1.3384 36 1 3.9329 -1.1565 0.3177 37 1 3.4278 -1.9363 2.9848 38 1 5.5222 -2.0351 4.6778 39 1 5.5219 -3.4937 3.6575 40 1 7.8355 -1.9897 3.0575 41 1 9.8921 -4.3559 6.4394 42 1 12.3849 -4.0556 6.0057 43 1 12.9306 -2.6396 3.9816 44 1 2.1076 -2.8135 0.8944 45 1 0.2787 -5.5778 1.2696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715713978.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:24 Heat of formation + Delta-G solvation = -58.062029 kcal Electronic energy + Delta-G solvation = -26410.330739 eV Core-core repulsion = 22553.656065 eV Total energy + Delta-G solvation = -3856.674673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 6.90 seconds Orbital eigenvalues (eV) -41.35198 -40.41973 -38.81401 -38.38183 -35.73686 -35.29787 -34.90595 -32.23503 -31.41787 -30.08277 -28.41440 -27.40230 -25.87605 -25.28126 -23.40240 -22.39816 -21.69332 -20.86773 -20.39443 -19.82505 -19.13554 -17.82886 -17.64518 -17.16972 -16.86139 -16.69294 -16.66157 -16.02376 -15.82736 -15.63792 -15.13265 -14.91872 -14.86479 -14.52335 -14.29563 -14.02770 -13.80201 -13.69092 -13.47535 -13.39634 -13.23228 -12.89224 -12.83462 -12.70936 -12.45867 -12.26451 -11.98015 -11.93152 -11.76757 -11.44272 -11.39040 -11.27309 -11.12602 -10.79966 -10.49330 -10.06272 -9.86844 -9.55739 -8.94607 -7.87080 -5.13499 -0.52131 0.47207 0.93436 1.37812 1.45967 1.50067 1.51949 1.58285 1.67136 2.08782 2.38704 2.60466 3.45934 3.56785 3.76115 3.88696 3.94540 4.14018 4.23253 4.31335 4.32128 4.33885 4.34767 4.48777 4.54789 4.65699 4.78418 4.94579 4.98978 5.01263 5.03965 5.08986 5.17810 5.20901 5.28038 5.32583 5.36097 5.49518 5.61982 5.67422 5.78867 6.24196 6.33476 6.45584 6.92393 7.07004 7.41850 8.13578 8.37790 9.35669 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002330 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.620734 B =12013.954499 C =13599.649099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.170 3.830 5 H 0.059 0.941 6 C 0.122 3.878 7 N -0.703 5.703 8 C 0.512 3.488 9 O -0.573 6.573 10 C 0.103 3.897 11 N -0.709 5.709 12 C 0.591 3.409 13 O -0.568 6.568 14 C -0.306 4.306 15 C -0.054 4.054 16 C -0.159 4.159 17 C -0.214 4.214 18 S 0.223 5.777 19 N -0.727 5.727 20 C -0.212 4.212 21 H 0.080 0.920 22 C -0.072 4.072 23 N -0.967 5.967 24 Si 0.956 3.044 25 H -0.295 1.295 26 H -0.304 1.304 27 H -0.269 1.269 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.414 0.586 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.412 0.588 41 H 0.151 0.849 42 H 0.173 0.827 43 H 0.202 0.798 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.950 9.290 4.592 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.062 3.938 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.353 5.353 8 C 0.298 3.702 9 O -0.454 6.454 10 C -0.024 4.024 11 N -0.363 5.363 12 C 0.379 3.621 13 O -0.450 6.450 14 C -0.426 4.426 15 C -0.088 4.088 16 C -0.189 4.189 17 C -0.352 4.352 18 S 0.490 5.510 19 N -0.367 5.367 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.265 4.265 23 N -0.618 5.618 24 Si 0.787 3.213 25 H -0.223 1.223 26 H -0.232 1.232 27 H -0.194 1.194 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.133 0.867 39 H 0.121 0.879 40 H 0.251 0.749 41 H 0.169 0.831 42 H 0.190 0.810 43 H 0.219 0.781 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.584 10.194 3.443 23.227 hybrid contribution -0.904 -1.917 1.221 2.446 sum 19.680 8.277 4.664 21.853 Atomic orbital electron populations 1.21738 0.95585 1.01705 1.00267 1.21627 0.96288 0.96371 0.98504 1.21852 1.01016 0.94842 1.02129 1.20716 0.90245 0.86018 0.96856 0.92350 1.21684 0.94432 0.95737 0.88321 1.45872 1.06404 1.52309 1.30754 1.20510 0.82859 0.80746 0.86060 1.90643 1.55790 1.50466 1.48504 1.21096 0.81163 1.01934 0.98206 1.45526 1.06503 1.53505 1.30810 1.17250 0.86207 0.77984 0.80689 1.90821 1.69914 1.45483 1.38735 1.24482 0.96027 1.14925 1.07159 1.21060 0.93175 0.96608 0.98002 1.20278 0.95801 1.02749 1.00086 1.25830 1.05162 1.03598 1.00631 1.83225 0.94622 1.47280 1.25825 1.42580 1.17213 1.03438 1.73472 1.19454 0.93265 0.91973 1.29661 0.90255 1.25333 1.01111 0.96314 1.03697 1.69791 1.38260 0.99694 1.54077 0.85393 0.81270 0.76641 0.78003 1.22280 1.23169 1.19424 0.93431 0.93155 0.93287 0.93111 0.92097 0.92224 0.92229 0.89485 0.92860 0.74970 0.86681 0.87939 0.74919 0.83139 0.81002 0.78110 0.79534 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 8.26 71.98 0.59 -3.90 16 2 C -0.11 -3.28 2.69 -10.79 -0.03 -3.31 16 3 C -0.14 -3.31 8.84 71.98 0.64 -2.67 16 4 C 0.17 5.71 2.18 44.99 0.10 5.81 16 5 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 6 C 0.12 3.69 4.73 86.38 0.41 4.10 16 7 N -0.70 -20.87 5.39 -463.07 -2.49 -23.37 16 8 C 0.51 15.01 7.90 87.66 0.69 15.70 16 9 O -0.57 -19.07 15.67 -3.03 -0.05 -19.11 16 10 C 0.10 2.71 6.15 85.63 0.53 3.24 16 11 N -0.71 -18.48 5.52 -470.91 -2.60 -21.08 16 12 C 0.59 16.55 7.78 86.42 0.67 17.22 16 13 O -0.57 -19.61 16.84 -4.35 -0.07 -19.69 16 14 C -0.31 -6.79 6.45 24.08 0.16 -6.64 16 15 C -0.05 -1.02 10.01 21.72 0.22 -0.80 16 16 C -0.16 -2.04 10.15 21.08 0.21 -1.83 16 17 C -0.21 -2.39 10.92 66.81 0.73 -1.66 16 18 S 0.22 3.47 22.16 -56.49 -1.25 2.22 16 19 N -0.73 -31.60 4.44 -322.94 -1.43 -33.03 16 20 C -0.21 -10.35 7.57 84.03 0.64 -9.71 16 21 H 0.08 3.74 7.40 -2.91 -0.02 3.72 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 23 N -0.97 -56.08 13.06 21.65 0.28 -55.80 16 24 Si 0.96 44.23 29.55 68.60 2.03 46.26 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 2.00 6.01 -2.39 -0.01 1.99 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.33 6.54 -2.39 -0.02 1.31 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 2.34 6.71 -2.39 -0.02 2.32 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.41 12.60 8.14 -92.71 -0.75 11.85 16 38 H 0.12 2.72 8.14 -2.39 -0.02 2.71 16 39 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 40 H 0.41 10.13 6.55 -92.70 -0.61 9.52 16 41 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.20 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.37 18.15 7.80 -92.71 -0.72 17.43 16 45 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -65.95 387.93 -0.62 -66.57 By element: Atomic # 1 Polarization: 45.93 SS G_CDS: -1.05 Total: 44.88 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.02 Total: 12.15 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -6.25 Total: -133.28 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.12 Total: -38.80 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -1.25 Total: 2.22 kcal Total: -65.95 -0.62 -66.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715713978.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.510 kcal (2) G-P(sol) polarization free energy of solvation -65.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.90 seconds