Wall clock time and date at job start Tue Mar 31 2020 22:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50701 * 109.47328 * 120.00100 * 2 1 3 5 5 N 1.28643 * 124.72538 * 120.00229 * 4 2 1 6 6 C 1.33559 * 115.76989 * 179.77856 * 5 4 2 7 7 C 1.47264 * 123.14458 * 180.25561 * 6 5 4 8 8 O 1.21631 * 120.00475 * 180.22631 * 7 6 5 9 9 N 1.34779 * 120.00007 * 0.22146 * 7 6 5 10 10 C 1.46497 * 120.00096 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47019 * 179.97438 * 10 9 7 12 12 O 1.42903 * 110.64458 * 66.68656 * 11 10 9 13 13 C 1.55161 * 110.72282 * 190.02012 * 11 10 9 14 14 C 1.54902 * 101.58281 * 153.86623 * 13 11 10 15 15 N 1.47420 * 104.83465 * 322.99120 * 14 13 11 16 16 C 1.36942 * 125.65413 * 204.16811 * 15 14 13 17 17 H 1.07991 * 120.00511 * 179.97438 * 16 15 14 18 18 C 1.38809 * 119.99417 * 359.95962 * 16 15 14 19 19 N 1.31619 * 120.00285 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99917 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47263 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47488 * 119.99665 * 20 18 16 23 23 H 1.48508 * 109.47106 * 239.99732 * 20 18 16 24 24 C 1.47023 * 108.70230 * 24.12931 * 15 14 13 25 25 C 1.35206 * 113.71617 * 0.43736 * 6 5 4 26 26 S 1.70773 * 124.71693 * 300.02545 * 4 2 1 27 27 H 1.08996 * 109.47245 * 300.00010 * 1 2 3 28 28 H 1.09003 * 109.47251 * 60.00251 * 1 2 3 29 29 H 1.09003 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47416 * 239.99686 * 2 1 3 31 31 H 1.09005 * 109.47338 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46787 * 300.00033 * 3 2 1 33 33 H 1.08996 * 109.47003 * 59.99842 * 3 2 1 34 34 H 0.97003 * 119.99657 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.46869 * 299.99400 * 10 9 7 36 36 H 1.08995 * 109.47776 * 59.99900 * 10 9 7 37 37 H 0.96707 * 113.99433 * 300.70276 * 12 11 10 38 38 H 1.09001 * 111.00255 * 271.94288 * 13 11 10 39 39 H 1.09000 * 110.99883 * 35.78699 * 13 11 10 40 40 H 1.09004 * 110.36252 * 204.15783 * 14 13 11 41 41 H 1.09002 * 110.36928 * 81.83510 * 14 13 11 42 42 H 0.96998 * 120.00290 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.88608 * 239.52567 * 24 15 14 44 44 H 1.08997 * 109.88493 * 118.35814 * 24 15 14 45 45 H 1.08002 * 125.58999 * 179.86197 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 2.7751 -1.7607 1.2183 6 6 3.1207 -2.2414 2.4155 7 6 3.9700 -3.4316 2.5907 8 8 4.2462 -3.8224 3.7089 9 7 4.4412 -4.0879 1.5120 10 6 5.2856 -5.2723 1.6863 11 6 5.6813 -5.8228 0.3147 12 8 6.5362 -4.9044 -0.3693 13 6 6.3608 -7.2106 0.4553 14 6 6.0517 -7.8492 -0.9217 15 7 4.6922 -7.3870 -1.2555 16 6 3.8191 -8.0190 -2.1002 17 1 2.8410 -7.5980 -2.2798 18 6 4.1916 -9.2007 -2.7260 19 7 5.3841 -9.7135 -2.5078 20 14 3.0011 -10.0626 -3.8789 21 1 1.7364 -9.2880 -3.9540 22 1 3.6045 -10.1585 -5.2324 23 1 2.7157 -11.4269 -3.3663 24 6 4.4285 -6.1355 -0.5304 25 6 2.6147 -1.5354 3.4517 26 16 1.6943 -0.2335 2.8350 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 4.2211 -3.7761 0.6202 35 1 6.1832 -5.0000 2.2416 36 1 4.7343 -6.0338 2.2377 37 1 6.1410 -4.0341 -0.5164 38 1 7.4354 -7.1061 0.6051 39 1 5.9095 -7.7864 1.2633 40 1 6.0756 -8.9366 -0.8495 41 1 6.7647 -7.5021 -1.6696 42 1 5.6445 -10.5391 -2.9454 43 1 3.5635 -6.2596 0.1211 44 1 4.2483 -5.3273 -1.2392 45 1 2.7703 -1.7551 4.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716926653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:06 Heat of formation + Delta-G solvation = -47.710696 kcal Electronic energy + Delta-G solvation = -27215.190135 eV Core-core repulsion = 23358.964329 eV Total energy + Delta-G solvation = -3856.225806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 27.11 seconds Orbital eigenvalues (eV) -41.71942 -40.55570 -39.56047 -36.86347 -36.44270 -35.46925 -34.01279 -31.53058 -31.13062 -29.91090 -28.05212 -27.81285 -26.71779 -25.31018 -23.84740 -22.30902 -21.62909 -21.38347 -20.98121 -19.59848 -18.90535 -18.34918 -17.34813 -17.03646 -16.77989 -16.74987 -16.43960 -15.96450 -15.68529 -15.42211 -15.29503 -15.09354 -14.80863 -14.53117 -14.25991 -13.94019 -13.87357 -13.61477 -13.33611 -13.08294 -13.02615 -12.94716 -12.81119 -12.63276 -12.41422 -12.14678 -12.11227 -12.00250 -11.89373 -11.87301 -11.68871 -11.31135 -10.98059 -10.85641 -10.77317 -10.68822 -10.36599 -9.86144 -8.93931 -7.80083 -5.25569 -0.55066 0.21432 0.56440 0.83155 1.45544 1.46921 1.57253 2.01455 2.20582 2.46930 2.83125 3.09714 3.28834 3.38421 3.62094 3.67574 3.86195 3.90038 3.98581 4.09054 4.15846 4.17679 4.42608 4.46344 4.56537 4.59617 4.73531 4.77662 4.80755 4.90250 4.91293 4.94951 4.95363 5.01978 5.15797 5.18843 5.32273 5.35767 5.43399 5.58511 5.76459 6.16107 6.26466 6.49984 6.69497 6.96353 7.07028 7.73142 8.37180 9.22264 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.002784 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.877830 B =10056.199279 C =11368.839392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.021 3.979 5 N -0.469 5.469 6 C -0.016 4.016 7 C 0.592 3.408 8 O -0.568 6.568 9 N -0.703 5.703 10 C 0.117 3.883 11 C 0.125 3.875 12 O -0.553 6.553 13 C -0.119 4.119 14 C 0.160 3.840 15 N -0.622 5.622 16 C -0.242 4.242 17 H 0.081 0.919 18 C -0.066 4.066 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.115 3.885 25 C -0.239 4.239 26 S 0.297 5.703 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.413 0.587 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.383 0.617 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.078 0.922 41 H -0.015 1.015 42 H 0.248 0.752 43 H 0.033 0.967 44 H 0.029 0.971 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.171 26.116 10.376 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 C -0.203 4.203 4 C -0.259 4.259 5 N -0.185 5.185 6 C -0.151 4.151 7 C 0.377 3.623 8 O -0.448 6.448 9 N -0.354 5.354 10 C -0.008 4.008 11 C 0.083 3.917 12 O -0.360 6.360 13 C -0.158 4.158 14 C 0.035 3.965 15 N -0.348 5.348 16 C -0.371 4.371 17 H 0.098 0.902 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.216 1.216 24 C -0.011 4.011 25 C -0.382 4.382 26 S 0.555 5.445 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.250 0.750 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.003 0.997 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.979 25.708 10.974 29.359 hybrid contribution -0.039 -1.283 -1.078 1.676 sum -9.018 24.425 9.896 27.854 Atomic orbital electron populations 1.21960 0.91832 1.02539 1.04217 1.20002 0.97074 0.96086 0.91384 1.21948 1.01407 0.92802 1.04180 1.27727 0.99809 0.96323 1.02003 1.66908 1.13929 1.11657 1.25958 1.20171 1.05755 1.00507 0.88629 1.17382 0.78871 0.81901 0.84175 1.90785 1.60537 1.68351 1.25113 1.45746 1.50949 1.28959 1.09742 1.21916 0.95081 0.87236 0.96520 1.22222 0.89854 0.90412 0.89216 1.86574 1.43607 1.26338 1.79483 1.22923 1.01274 0.92413 0.99147 1.21668 0.84170 0.99939 0.90684 1.44708 1.13844 1.23958 1.52281 1.19485 0.95748 1.03587 1.18252 0.90151 1.25671 0.98809 0.98971 1.02432 1.70050 1.20371 1.21860 1.47504 0.84946 0.78139 0.78034 0.77794 1.19086 1.21829 1.21602 1.22060 0.95927 0.89141 0.93939 1.26924 1.03669 1.01415 1.06168 1.82392 1.42389 1.22357 0.97317 0.90993 0.89354 0.93152 0.88786 0.92714 0.89392 0.91062 0.75004 0.89579 0.90570 0.76764 0.89269 0.89285 0.90452 0.99661 0.94189 0.94957 0.95283 0.78735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.09 71.98 0.65 -0.63 16 2 C -0.02 -0.28 3.34 -11.54 -0.04 -0.31 16 3 C -0.15 -1.10 9.09 71.98 0.65 -0.45 16 4 C 0.02 0.35 6.00 88.58 0.53 0.88 16 5 N -0.47 -10.91 10.12 -180.84 -1.83 -12.74 16 6 C -0.02 -0.39 6.70 40.56 0.27 -0.12 16 7 C 0.59 17.83 7.80 86.62 0.68 18.51 16 8 O -0.57 -19.98 16.71 -4.13 -0.07 -20.05 16 9 N -0.70 -20.01 5.13 -466.53 -2.39 -22.40 16 10 C 0.12 3.55 4.80 86.38 0.41 3.96 16 11 C 0.12 4.39 0.93 -9.60 -0.01 4.38 16 12 O -0.55 -18.84 13.10 -148.98 -1.95 -20.79 16 13 C -0.12 -4.65 6.26 31.99 0.20 -4.45 16 14 C 0.16 8.28 5.88 86.85 0.51 8.79 16 15 N -0.62 -33.06 3.39 -692.02 -2.35 -35.41 16 16 C -0.24 -13.90 10.27 84.03 0.86 -13.03 16 17 H 0.08 4.43 7.83 -2.92 -0.02 4.40 16 18 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 19 N -0.95 -57.60 10.09 21.65 0.22 -57.38 16 20 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 C 0.12 4.83 5.76 86.73 0.50 5.33 16 25 C -0.24 -4.64 10.62 67.12 0.71 -3.93 16 26 S 0.30 3.62 22.22 -56.49 -1.26 2.36 16 27 H 0.07 0.43 7.91 -2.39 -0.02 0.42 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.37 7.91 -2.39 -0.02 0.35 16 34 H 0.41 11.07 6.99 -92.71 -0.65 10.42 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 37 H 0.38 10.07 8.44 -74.05 -0.62 9.44 16 38 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.26 7.96 -2.39 -0.02 3.24 16 40 H 0.08 4.47 5.87 -2.38 -0.01 4.46 16 41 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.03 1.36 7.82 -2.39 -0.02 1.34 16 44 H 0.03 1.20 8.07 -2.39 -0.02 1.18 16 45 H 0.20 3.41 8.03 -2.91 -0.02 3.38 16 Total: -1.00 -75.03 381.98 -1.45 -76.48 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.25 Total: 26.04 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 6.41 Total: 15.56 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -6.35 Total: -127.92 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -2.02 Total: -40.83 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.26 Total: 2.36 kcal Total: -75.03 -1.45 -76.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716926653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.766 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.11 seconds