Wall clock time and date at job start Wed Apr 1 2020 01:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47188 * 109.73346 * 3 2 1 5 5 C 1.34773 * 120.00096 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00048 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99914 * 179.97438 * 5 4 3 8 8 N 1.46898 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.46904 * 111.00289 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.09003 * 110.91985 * 51.09329 * 10 9 8 12 12 C 1.55152 * 111.00506 * 175.00188 * 10 9 8 13 13 C 1.54323 * 102.94507 * 153.57338 * 12 10 9 14 14 N 1.47019 * 107.27046 * 337.80871 * 13 12 10 15 15 C 1.34775 * 125.64724 * 178.90656 * 14 13 12 16 16 O 1.21284 * 120.00295 * 180.02562 * 15 14 13 17 17 C 1.50708 * 119.99957 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47016 * 299.99635 * 23 21 19 26 26 H 1.48495 * 109.47483 * 59.99992 * 23 21 19 27 27 C 1.47419 * 108.70475 * 359.16380 * 14 13 12 28 28 H 4.40646 * 5.51502 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47652 * 349.73516 * 3 2 1 30 30 H 1.09000 * 109.46894 * 229.73431 * 3 2 1 31 31 H 0.97002 * 119.99578 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.47130 * 60.00683 * 7 5 4 33 33 H 1.09000 * 109.47480 * 300.00604 * 7 5 4 34 34 H 1.00901 * 110.99952 * 303.96190 * 8 7 5 35 35 H 1.08998 * 109.46994 * 60.00211 * 9 8 7 36 36 H 1.08996 * 109.46782 * 299.99832 * 9 8 7 37 37 H 1.09001 * 110.71860 * 35.21044 * 12 10 9 38 38 H 1.08999 * 110.71932 * 271.93917 * 12 10 9 39 39 H 1.08999 * 109.88038 * 218.38538 * 13 12 10 40 40 H 1.09008 * 110.00757 * 97.29760 * 13 12 10 41 41 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 42 42 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 43 43 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 44 44 H 1.08999 * 110.36921 * 142.73978 * 27 14 13 45 45 H 1.08996 * 110.36854 * 265.06399 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.4672 -1.3001 5 6 4.4591 0.5515 -1.5318 6 8 5.2474 0.2406 -0.6641 7 6 4.9612 1.0309 -2.8693 8 7 6.4301 1.0317 -2.8694 9 6 6.9564 1.4950 -4.1603 10 6 8.4858 1.4815 -4.1220 11 1 8.8580 0.5163 -3.7783 12 6 9.0801 1.8450 -5.5084 13 6 10.4581 2.4393 -5.1487 14 7 10.3869 2.8926 -3.7520 15 6 11.3957 3.4527 -3.0555 16 8 11.2234 3.7898 -1.9033 17 6 12.7381 3.6600 -3.7085 18 16 13.8731 4.4255 -2.5246 19 6 15.3193 4.5494 -3.5234 20 1 15.3022 4.1977 -4.5443 21 6 16.4805 5.0991 -2.9980 22 7 16.5015 5.5273 -1.7535 23 14 18.0135 5.2310 -4.0572 24 1 19.1091 5.8485 -3.2675 25 1 18.4270 3.8754 -4.5006 26 1 17.7235 6.0734 -5.2452 27 6 9.0311 2.6275 -3.2375 28 1 -1.0502 0.0001 0.0002 29 1 3.0098 -1.0104 0.1831 30 1 3.0089 0.6650 0.7842 31 1 2.5036 0.7162 -1.9940 32 1 4.5970 2.0417 -3.0531 33 1 4.5985 0.3660 -3.6532 34 1 6.7915 1.5900 -2.1105 35 1 6.6064 2.5093 -4.3523 36 1 6.6073 0.8338 -4.9533 37 1 8.4596 2.5867 -6.0114 38 1 9.1936 0.9534 -6.1250 39 1 10.6795 3.2835 -5.8017 40 1 11.2312 1.6779 -5.2524 41 1 12.6236 4.3107 -4.5755 42 1 13.1398 2.6981 -4.0266 43 1 15.7053 5.4591 -1.2037 44 1 9.0757 2.3139 -2.1945 45 1 8.4057 3.5142 -3.3414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731649512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:29 Heat of formation + Delta-G solvation = -16.023612 kcal Electronic energy + Delta-G solvation = -25250.383140 eV Core-core repulsion = 21395.531389 eV Total energy + Delta-G solvation = -3854.851751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.25976 -39.87409 -37.76710 -36.23049 -35.58138 -33.17777 -32.50737 -32.28711 -29.81179 -29.57702 -28.21656 -26.28608 -24.88006 -24.33976 -22.67002 -21.14171 -20.60244 -19.43280 -19.20380 -18.20766 -17.60902 -16.89359 -16.79604 -16.50384 -16.24537 -15.51709 -15.26428 -14.78768 -14.64221 -14.52078 -14.12472 -14.02236 -13.88727 -13.81158 -13.46816 -13.43000 -12.87673 -12.66431 -12.50738 -12.36329 -12.25169 -11.86492 -11.81230 -11.43689 -11.43364 -11.09065 -11.07577 -10.95230 -10.90030 -10.25542 -10.15864 -9.63467 -9.55630 -9.48176 -8.99429 -8.91490 -8.54177 -8.19807 -6.65048 -6.60134 -3.97873 1.78187 2.12836 2.21648 2.82427 2.87398 2.99892 3.34672 3.39370 3.49158 3.59653 3.64824 3.72888 4.20964 4.26302 4.29672 4.33352 4.56237 4.73987 4.79426 4.90110 4.96458 5.00288 5.02104 5.04305 5.12630 5.24540 5.25203 5.27865 5.38899 5.42829 5.53680 5.58916 5.67691 5.76332 5.77259 5.88989 5.99847 6.04314 6.37654 6.40300 6.83995 6.88905 6.97234 7.62254 7.72741 7.93610 8.49250 8.52123 9.29366 10.83814 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001566 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.384951 B =17880.422550 C =18745.399841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.231 3.769 4 N -0.734 5.734 5 C 0.513 3.487 6 O -0.516 6.516 7 C 0.043 3.957 8 N -0.675 5.675 9 C 0.074 3.926 10 C -0.101 4.101 11 H 0.098 0.902 12 C -0.123 4.123 13 C 0.101 3.899 14 N -0.625 5.625 15 C 0.546 3.454 16 O -0.516 6.516 17 C -0.124 4.124 18 S -0.117 6.117 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.036 3.964 22 N -0.884 5.884 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.109 3.891 28 H 0.222 0.778 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.403 0.597 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.355 0.645 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.278 0.722 44 H 0.080 0.920 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.575 -11.601 -8.237 35.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.211 4.211 3 C 0.108 3.892 4 N -0.388 5.388 5 C 0.298 3.702 6 O -0.390 6.390 7 C -0.090 4.090 8 N -0.309 5.309 9 C -0.056 4.056 10 C -0.121 4.121 11 H 0.116 0.884 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.362 5.362 15 C 0.335 3.665 16 O -0.390 6.390 17 C -0.275 4.275 18 S 0.110 5.890 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.518 5.518 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.014 4.014 28 H 0.239 0.761 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.237 0.763 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.175 0.825 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -30.503 -11.433 -5.954 33.115 hybrid contribution -2.161 0.086 -1.885 2.869 sum -32.664 -11.347 -7.839 35.456 Atomic orbital electron populations 1.25072 0.95992 1.00241 0.97425 1.22922 0.94265 1.01226 1.02727 1.18063 0.83076 1.01667 0.86371 1.45969 1.07368 1.69356 1.16123 1.20653 0.81629 0.77903 0.89978 1.90778 1.54876 1.47209 1.46149 1.21773 0.90634 1.01290 0.95279 1.60162 1.04601 1.60370 1.05733 1.21915 0.93605 0.98583 0.91455 1.22380 0.94211 0.99942 0.95556 0.88398 1.22647 0.95432 1.01395 0.96682 1.22004 0.98006 0.99292 0.82937 1.48440 1.11579 1.62918 1.13275 1.20001 0.84417 0.76221 0.85899 1.90713 1.82350 1.49113 1.16845 1.23287 0.95199 1.04932 1.04053 1.84831 1.06829 1.78989 1.18395 1.23693 0.98309 1.51918 1.01612 0.91644 1.26052 1.01090 0.92641 0.97708 1.70797 1.32509 1.41430 1.07057 0.83332 0.74484 0.76674 0.74505 1.20269 1.21131 1.21152 1.22194 0.83246 0.96724 0.99196 0.76083 0.88881 0.88909 0.76259 0.92017 0.87793 0.82473 0.94518 0.90143 0.90471 0.89685 0.91256 0.91163 0.89096 0.89033 0.90978 0.90158 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 19.25 29.55 0.57 -0.16 16 2 C -0.21 -1.19 13.46 -37.12 -0.50 -1.69 16 3 C 0.23 1.39 6.15 -6.83 -0.04 1.35 16 4 N -0.73 -3.99 5.54 -63.16 -0.35 -4.34 16 5 C 0.51 4.10 7.87 -10.99 -0.09 4.01 16 6 O -0.52 -6.54 16.20 5.56 0.09 -6.45 16 7 C 0.04 0.24 6.17 -4.98 -0.03 0.21 16 8 N -0.68 -5.44 6.13 -115.06 -0.70 -6.14 16 9 C 0.07 0.47 5.19 -3.82 -0.02 0.45 16 10 C -0.10 -0.86 3.24 -88.59 -0.29 -1.14 16 11 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 12 C -0.12 -0.89 6.42 -24.90 -0.16 -1.05 16 13 C 0.10 1.08 6.49 -3.07 -0.02 1.06 16 14 N -0.62 -9.26 3.33 -170.66 -0.57 -9.83 16 15 C 0.55 10.94 7.87 -10.98 -0.09 10.86 16 16 O -0.52 -12.38 16.12 5.55 0.09 -12.29 16 17 C -0.12 -2.63 5.35 36.01 0.19 -2.43 16 18 S -0.12 -3.24 19.60 -107.50 -2.11 -5.34 16 19 C -0.61 -17.80 9.50 30.94 0.29 -17.51 16 20 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 21 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 22 N -0.88 -27.88 13.67 55.49 0.76 -27.12 16 23 Si 1.08 25.18 29.92 -169.99 -5.09 20.10 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.11 1.32 5.84 -2.64 -0.02 1.31 16 28 H 0.22 0.21 7.80 -54.08 -0.42 -0.21 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.40 1.15 8.45 -40.82 -0.34 0.81 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.36 3.38 7.93 -39.29 -0.31 3.07 16 35 H 0.04 0.21 7.96 -51.93 -0.41 -0.20 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 41 H 0.09 1.80 8.14 -51.91 -0.42 1.37 16 42 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 43 H 0.28 8.97 7.12 -40.82 -0.29 8.68 16 44 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 45 H 0.06 0.69 7.90 -51.93 -0.41 0.28 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -39.22 400.71 -9.01 -48.23 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.88 Total: 0.93 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.29 Total: -3.79 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.86 Total: -47.43 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.10 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.11 Total: -5.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -39.22 -9.01 -48.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731649512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.209 kcal (2) G-P(sol) polarization free energy of solvation -39.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds