Wall clock time and date at job start Wed Apr 1 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47343 * 263.22220 * 3 2 1 5 5 C 1.34774 * 120.00122 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00076 * 180.02562 * 5 4 3 8 8 N 1.46899 * 109.46879 * 180.02562 * 7 5 4 9 9 C 1.46899 * 110.99773 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47280 * 180.02562 * 9 8 7 11 11 H 1.08994 * 110.88434 * 302.57508 * 10 9 8 12 12 C 1.55552 * 110.96662 * 178.64958 * 10 9 8 13 13 C 1.54325 * 102.75696 * 206.40110 * 12 10 9 14 14 N 1.47018 * 107.40412 * 22.23822 * 13 12 10 15 15 C 1.34775 * 125.65103 * 180.94532 * 14 13 12 16 16 O 1.21283 * 120.00490 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99715 * 0.02633 * 15 14 13 18 18 S 1.81003 * 109.47214 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00149 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00161 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00317 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00253 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99534 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47159 * 90.00328 * 23 21 19 25 25 H 1.48501 * 109.46865 * 210.00092 * 23 21 19 26 26 H 1.48502 * 109.47249 * 329.99812 * 23 21 19 27 27 C 1.47430 * 108.70532 * 0.98338 * 14 13 12 28 28 H 4.40639 * 5.51425 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.46501 * 143.22509 * 3 2 1 30 30 H 1.09001 * 109.47386 * 23.23298 * 3 2 1 31 31 H 0.97002 * 119.99642 * 0.02562 * 4 3 2 32 32 H 1.08993 * 109.46843 * 60.00389 * 7 5 4 33 33 H 1.08996 * 109.46818 * 300.00595 * 7 5 4 34 34 H 1.00904 * 111.00233 * 56.04741 * 8 7 5 35 35 H 1.08998 * 109.47202 * 60.00223 * 9 8 7 36 36 H 1.09004 * 109.47168 * 300.00405 * 9 8 7 37 37 H 1.08993 * 110.83076 * 88.08322 * 12 10 9 38 38 H 1.09000 * 110.77660 * 324.68888 * 12 10 9 39 39 H 1.09002 * 109.88192 * 262.74262 * 13 12 10 40 40 H 1.09000 * 109.88128 * 141.73114 * 13 12 10 41 41 H 1.09003 * 109.47454 * 300.00129 * 17 15 14 42 42 H 1.09003 * 109.47508 * 59.99708 * 17 15 14 43 43 H 0.97007 * 120.00417 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36526 * 94.70985 * 27 14 13 45 45 H 1.08992 * 110.36633 * 216.92450 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1639 1.3715 5 6 4.4593 0.1930 1.6161 6 8 5.2475 0.0846 0.7007 7 6 4.9617 0.3603 3.0271 8 7 6.4307 0.3611 3.0270 9 6 6.9571 0.5233 4.3888 10 6 8.4866 0.5199 4.3481 11 1 8.8612 -0.3977 3.8947 12 6 9.0816 0.7238 5.7708 13 6 10.4565 1.3601 5.4771 14 7 10.3821 1.9713 4.1421 15 6 11.3877 2.6129 3.5147 16 8 11.2125 3.0808 2.4095 17 6 12.7298 2.7489 4.1864 18 16 13.8602 3.6517 3.0986 19 6 15.3071 3.6651 4.1040 20 1 15.2930 3.1964 5.0769 21 6 16.4651 4.2780 3.6458 22 7 17.5460 4.2876 4.3967 23 14 16.4897 5.0882 1.9628 24 1 16.0845 6.5109 2.0923 25 1 17.8609 5.0135 1.3976 26 1 15.5433 4.3841 1.0606 27 6 9.0249 1.7671 3.6036 28 1 -1.0500 0.0002 0.0000 29 1 3.0089 0.8240 -0.6153 30 1 3.0098 -0.9435 -0.4054 31 1 2.5039 0.2502 2.1037 32 1 4.5985 -0.4630 3.6420 33 1 4.5981 1.3045 3.4325 34 1 6.7919 1.0754 2.4126 35 1 6.6081 -0.2989 5.0135 36 1 6.6070 1.4686 4.8035 37 1 9.2000 -0.2315 6.2820 38 1 8.4602 1.4014 6.3563 39 1 11.2306 0.5929 5.4909 40 1 10.6784 2.1238 6.2226 41 1 12.6137 3.2938 5.1232 42 1 13.1361 1.7582 4.3903 43 1 18.3554 4.7156 4.0764 44 1 8.3989 2.6342 3.8140 45 1 9.0666 1.5817 2.5304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731649517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:37 Heat of formation + Delta-G solvation = -10.387568 kcal Electronic energy + Delta-G solvation = -25303.619072 eV Core-core repulsion = 21449.011719 eV Total energy + Delta-G solvation = -3854.607353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 7.55 seconds Orbital eigenvalues (eV) -40.25857 -39.86484 -37.76761 -36.22515 -35.57706 -33.17694 -32.42362 -32.26797 -29.80856 -29.57956 -28.19933 -26.27614 -25.57881 -24.46387 -22.65124 -21.13128 -20.59249 -19.45054 -19.20291 -17.70721 -17.60451 -16.89573 -16.69239 -16.50183 -16.23524 -15.51751 -15.13711 -14.90471 -14.75165 -14.64163 -14.38800 -14.01944 -13.91283 -13.80924 -13.43793 -13.41997 -12.88300 -12.79356 -12.59444 -12.45407 -12.23448 -11.87080 -11.43706 -11.42652 -11.22946 -11.11313 -11.08025 -10.99168 -10.94451 -10.56942 -10.25286 -9.83166 -9.63373 -9.48770 -8.97955 -8.90846 -8.54358 -8.46773 -6.89353 -6.26748 -3.98260 1.78157 2.12830 2.21694 2.72516 2.86718 2.98729 3.23616 3.35604 3.53689 3.62864 3.64820 3.72215 4.23104 4.28809 4.33604 4.36049 4.56009 4.72740 4.74446 4.80845 4.96165 4.96658 5.00563 5.03109 5.11410 5.12510 5.22820 5.25191 5.28681 5.41256 5.54706 5.59370 5.68331 5.76433 5.77439 5.89687 6.00682 6.04929 6.36940 6.40170 6.84204 6.88868 6.97362 7.61908 7.72895 7.96283 8.43603 8.47782 9.19644 10.82455 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.001676 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.098440 B =16705.339783 C =17877.747503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.211 4.211 3 C 0.231 3.769 4 N -0.734 5.734 5 C 0.512 3.488 6 O -0.516 6.516 7 C 0.043 3.957 8 N -0.676 5.676 9 C 0.073 3.927 10 C -0.101 4.101 11 H 0.097 0.903 12 C -0.124 4.124 13 C 0.100 3.900 14 N -0.624 5.624 15 C 0.546 3.454 16 O -0.517 6.517 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.110 3.890 28 H 0.222 0.778 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.403 0.597 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.355 0.645 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.827 -11.002 2.202 36.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.211 4.211 3 C 0.108 3.892 4 N -0.388 5.388 5 C 0.298 3.702 6 O -0.390 6.390 7 C -0.090 4.090 8 N -0.309 5.309 9 C -0.056 4.056 10 C -0.120 4.120 11 H 0.116 0.884 12 C -0.162 4.162 13 C -0.023 4.023 14 N -0.361 5.361 15 C 0.335 3.665 16 O -0.392 6.392 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.013 4.013 28 H 0.239 0.761 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.237 0.763 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.175 0.825 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -34.132 -10.963 -0.137 35.849 hybrid contribution -0.289 0.818 1.303 1.566 sum -34.421 -10.145 1.166 35.903 Atomic orbital electron populations 1.25070 0.95989 1.00615 0.97066 1.22926 0.94266 1.01023 1.02916 1.18062 0.83068 1.03645 0.84404 1.45967 1.07371 1.76279 1.09201 1.20661 0.81626 0.76265 0.91629 1.90780 1.54880 1.47343 1.45989 1.21772 0.90638 1.02731 0.93821 1.60148 1.04593 1.56103 1.10052 1.21920 0.93657 1.00508 0.89503 1.22480 0.94173 0.99343 0.96010 0.88444 1.22726 0.95495 1.01569 0.96421 1.22013 0.98056 0.97603 0.84654 1.48430 1.11627 1.57582 1.18505 1.19988 0.84448 0.76742 0.85367 1.90711 1.82280 1.46788 1.19403 1.23253 0.94740 1.05277 1.03487 1.84801 1.07896 1.72890 1.26049 1.22312 0.95743 1.43073 1.05704 0.89405 1.24697 0.94244 0.94626 0.97644 1.69935 1.01809 1.42798 1.37200 0.86742 0.79036 0.81324 0.84812 1.19219 1.19924 1.15888 1.22213 0.83178 0.96325 0.99624 0.76092 0.88912 0.88880 0.76261 0.87787 0.92031 0.82460 0.90145 0.94557 0.89657 0.90474 0.91051 0.91152 0.88640 0.88534 0.91958 0.92148 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 19.25 29.55 0.57 -0.15 16 2 C -0.21 -1.17 13.46 -37.12 -0.50 -1.67 16 3 C 0.23 1.37 6.15 -6.83 -0.04 1.33 16 4 N -0.73 -3.91 5.54 -63.16 -0.35 -4.26 16 5 C 0.51 4.04 7.87 -10.98 -0.09 3.95 16 6 O -0.52 -6.48 16.20 5.55 0.09 -6.39 16 7 C 0.04 0.23 6.17 -4.97 -0.03 0.20 16 8 N -0.68 -5.32 6.13 -115.06 -0.70 -6.03 16 9 C 0.07 0.45 5.20 -3.82 -0.02 0.43 16 10 C -0.10 -0.82 3.30 -88.25 -0.29 -1.11 16 11 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.12 -0.86 6.45 -24.68 -0.16 -1.02 16 13 C 0.10 1.03 6.47 -3.07 -0.02 1.01 16 14 N -0.62 -8.90 3.33 -170.52 -0.57 -9.47 16 15 C 0.55 10.47 7.87 -10.99 -0.09 10.39 16 16 O -0.52 -11.89 16.12 5.55 0.09 -11.80 16 17 C -0.12 -2.38 5.35 36.01 0.19 -2.18 16 18 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 19 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.10 2.86 5.50 -17.43 -0.10 2.76 16 22 N -0.88 -26.81 13.97 55.49 0.78 -26.04 16 23 Si 0.86 22.13 27.74 -169.99 -4.71 17.41 16 24 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.23 -6.09 6.74 56.52 0.38 -5.71 16 27 C 0.11 1.28 5.61 -2.53 -0.01 1.27 16 28 H 0.22 0.20 7.80 -54.09 -0.42 -0.23 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 1.11 8.45 -40.82 -0.34 0.77 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.36 3.31 7.60 -39.29 -0.30 3.01 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.20 8.10 -51.93 -0.42 -0.22 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.45 8.05 -51.93 -0.42 0.04 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.81 8.14 -51.92 -0.42 1.38 16 42 H 0.10 1.84 8.14 -51.91 -0.42 1.42 16 43 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 44 H 0.06 0.66 8.00 -51.93 -0.42 0.25 16 45 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 LS Contribution 399.03 15.07 6.01 6.01 Total: -1.00 -38.12 399.03 -8.59 -46.71 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.96 Total: -0.72 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.27 Total: 0.29 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.85 Total: -45.79 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.19 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.12 -8.59 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731649517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.324 kcal (2) G-P(sol) polarization free energy of solvation -38.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.55 seconds