Wall clock time and date at job start Wed Apr 1 2020 01:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47343 * 263.22220 * 3 2 1 5 5 C 1.34774 * 120.00122 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00076 * 180.02562 * 5 4 3 8 8 N 1.46899 * 109.46879 * 180.02562 * 7 5 4 9 9 C 1.46899 * 110.99773 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47280 * 180.02562 * 9 8 7 11 11 H 1.08994 * 110.88434 * 302.57508 * 10 9 8 12 12 C 1.55552 * 110.96662 * 178.64958 * 10 9 8 13 13 C 1.54325 * 102.75696 * 206.40110 * 12 10 9 14 14 N 1.47018 * 107.40412 * 22.23822 * 13 12 10 15 15 C 1.34775 * 125.65103 * 180.94532 * 14 13 12 16 16 O 1.21283 * 120.00490 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99715 * 0.02633 * 15 14 13 18 18 S 1.81003 * 109.47214 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00149 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00161 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00317 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00253 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99534 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47159 * 90.00328 * 23 21 19 25 25 H 1.48501 * 109.46865 * 210.00092 * 23 21 19 26 26 H 1.48502 * 109.47249 * 329.99812 * 23 21 19 27 27 C 1.47430 * 108.70532 * 0.98338 * 14 13 12 28 28 H 4.40639 * 5.51425 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.46501 * 143.22509 * 3 2 1 30 30 H 1.09001 * 109.47386 * 23.23298 * 3 2 1 31 31 H 0.97002 * 119.99642 * 0.02562 * 4 3 2 32 32 H 1.08993 * 109.46843 * 60.00389 * 7 5 4 33 33 H 1.08996 * 109.46818 * 300.00595 * 7 5 4 34 34 H 1.00904 * 111.00233 * 56.04741 * 8 7 5 35 35 H 1.08998 * 109.47202 * 60.00223 * 9 8 7 36 36 H 1.09004 * 109.47168 * 300.00405 * 9 8 7 37 37 H 1.08993 * 110.83076 * 88.08322 * 12 10 9 38 38 H 1.09000 * 110.77660 * 324.68888 * 12 10 9 39 39 H 1.09002 * 109.88192 * 262.74262 * 13 12 10 40 40 H 1.09000 * 109.88128 * 141.73114 * 13 12 10 41 41 H 1.09003 * 109.47454 * 300.00129 * 17 15 14 42 42 H 1.09003 * 109.47508 * 59.99708 * 17 15 14 43 43 H 0.97007 * 120.00417 * 179.97438 * 22 21 19 44 44 H 1.08997 * 110.36526 * 94.70985 * 27 14 13 45 45 H 1.08992 * 110.36633 * 216.92450 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1639 1.3715 5 6 4.4593 0.1930 1.6161 6 8 5.2475 0.0846 0.7007 7 6 4.9617 0.3603 3.0271 8 7 6.4307 0.3611 3.0270 9 6 6.9571 0.5233 4.3888 10 6 8.4866 0.5199 4.3481 11 1 8.8612 -0.3977 3.8947 12 6 9.0816 0.7238 5.7708 13 6 10.4565 1.3601 5.4771 14 7 10.3821 1.9713 4.1421 15 6 11.3877 2.6129 3.5147 16 8 11.2125 3.0808 2.4095 17 6 12.7298 2.7489 4.1864 18 16 13.8602 3.6517 3.0986 19 6 15.3071 3.6651 4.1040 20 1 15.2930 3.1964 5.0769 21 6 16.4651 4.2780 3.6458 22 7 17.5460 4.2876 4.3967 23 14 16.4897 5.0882 1.9628 24 1 16.0845 6.5109 2.0923 25 1 17.8609 5.0135 1.3976 26 1 15.5433 4.3841 1.0606 27 6 9.0249 1.7671 3.6036 28 1 -1.0500 0.0002 0.0000 29 1 3.0089 0.8240 -0.6153 30 1 3.0098 -0.9435 -0.4054 31 1 2.5039 0.2502 2.1037 32 1 4.5985 -0.4630 3.6420 33 1 4.5981 1.3045 3.4325 34 1 6.7919 1.0754 2.4126 35 1 6.6081 -0.2989 5.0135 36 1 6.6070 1.4686 4.8035 37 1 9.2000 -0.2315 6.2820 38 1 8.4602 1.4014 6.3563 39 1 11.2306 0.5929 5.4909 40 1 10.6784 2.1238 6.2226 41 1 12.6137 3.2938 5.1232 42 1 13.1361 1.7582 4.3903 43 1 18.3554 4.7156 4.0764 44 1 8.3989 2.6342 3.8140 45 1 9.0666 1.5817 2.5304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731649517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:33 Heat of formation + Delta-G solvation = -40.128282 kcal Electronic energy + Delta-G solvation = -25304.908727 eV Core-core repulsion = 21449.011719 eV Total energy + Delta-G solvation = -3855.897008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.14365 -40.75502 -38.87376 -36.82892 -36.25121 -34.69026 -33.66344 -33.22218 -30.95815 -30.49968 -28.89647 -27.88714 -26.90467 -25.23542 -23.42109 -21.70771 -21.27355 -20.75741 -19.72815 -19.52482 -18.21216 -18.06777 -17.55617 -17.19637 -17.10990 -16.94632 -16.59738 -16.12631 -15.67853 -15.48989 -15.23015 -15.21647 -14.91332 -14.73936 -14.39684 -14.27934 -14.14845 -13.94632 -13.58829 -13.36656 -13.29044 -13.15814 -13.02837 -12.71885 -12.68854 -12.05357 -11.89639 -11.84296 -11.78720 -11.59327 -11.49096 -11.18522 -11.04707 -10.87672 -10.56103 -10.16914 -9.72913 -9.38396 -9.03290 -8.53041 -6.24598 0.94468 1.29803 1.39066 1.44344 1.48763 1.52229 1.59376 1.80947 2.05533 2.24052 2.42809 2.66661 2.85216 3.17660 3.33695 3.47698 3.62495 3.79944 3.83519 3.95824 4.14296 4.29097 4.34121 4.37717 4.40319 4.44295 4.46305 4.51883 4.54666 4.65031 4.72956 4.85672 4.92932 4.98231 4.99573 5.11659 5.28168 5.31097 5.42240 5.69404 5.94827 6.09503 6.25115 6.34947 6.51247 6.55406 6.92168 7.03557 7.20991 8.59329 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.001676 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.098440 B =16705.339783 C =17877.747503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.248 4.248 3 C 0.231 3.769 4 N -0.719 5.719 5 C 0.508 3.492 6 O -0.573 6.573 7 C 0.048 3.952 8 N -0.698 5.698 9 C 0.080 3.920 10 C -0.089 4.089 11 H 0.084 0.916 12 C -0.108 4.108 13 C 0.085 3.915 14 N -0.616 5.616 15 C 0.543 3.457 16 O -0.567 6.567 17 C -0.100 4.100 18 S -0.178 6.178 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.049 3.951 22 N -0.915 5.915 23 Si 0.912 3.088 24 H -0.261 1.261 25 H -0.257 1.257 26 H -0.240 1.240 27 C 0.105 3.895 28 H 0.253 0.747 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.342 0.658 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.278 0.722 44 H 0.071 0.929 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.882 -11.695 3.926 39.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.249 4.249 3 C 0.108 3.892 4 N -0.373 5.373 5 C 0.296 3.704 6 O -0.451 6.451 7 C -0.084 4.084 8 N -0.331 5.331 9 C -0.048 4.048 10 C -0.109 4.109 11 H 0.103 0.897 12 C -0.146 4.146 13 C -0.037 4.037 14 N -0.350 5.350 15 C 0.331 3.669 16 O -0.446 6.446 17 C -0.251 4.251 18 S 0.048 5.952 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.156 4.156 22 N -0.553 5.553 23 Si 0.734 3.266 24 H -0.186 1.186 25 H -0.181 1.181 26 H -0.164 1.164 27 C -0.018 4.018 28 H 0.269 0.731 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.255 0.745 32 H 0.148 0.852 33 H 0.105 0.895 34 H 0.160 0.840 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -37.257 -11.694 1.670 39.085 hybrid contribution 0.477 0.937 0.868 1.364 sum -36.781 -10.757 2.538 38.405 Atomic orbital electron populations 1.25867 0.96709 0.98686 0.95229 1.22975 0.94453 1.02782 1.04655 1.17922 0.83892 1.02801 0.84588 1.45868 1.07036 1.74846 1.09537 1.21234 0.81780 0.75150 0.92277 1.90757 1.56343 1.50207 1.47800 1.21866 0.89305 1.04978 0.92238 1.60164 1.06173 1.55979 1.10770 1.21933 0.91704 1.02240 0.88971 1.22410 0.95807 0.96574 0.96081 0.89719 1.22742 0.93164 1.02995 0.95700 1.22424 1.00748 0.98027 0.82489 1.48441 1.11421 1.55413 1.19759 1.19718 0.84933 0.77337 0.84900 1.90686 1.83094 1.49454 1.21406 1.23193 0.94255 1.05074 1.02596 1.84758 1.08150 1.74464 1.27815 1.22427 0.97334 1.42676 1.05189 0.91847 1.25508 0.93959 0.95152 1.01009 1.70004 1.02545 1.43771 1.38954 0.85900 0.79648 0.80403 0.80628 1.18597 1.18082 1.16420 1.22427 0.81925 0.98751 0.98675 0.73051 0.89980 0.89810 0.74527 0.85214 0.89478 0.83985 0.87841 0.93016 0.87123 0.88335 0.90723 0.90214 0.87048 0.87232 0.91293 0.91076 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 19.25 74.32 1.43 0.48 16 2 C -0.25 -2.57 13.46 31.12 0.42 -2.15 16 3 C 0.23 2.86 6.15 84.57 0.52 3.38 16 4 N -0.72 -7.20 5.54 -472.13 -2.61 -9.82 16 5 C 0.51 7.81 7.87 87.66 0.69 8.50 16 6 O -0.57 -15.09 16.20 -3.04 -0.05 -15.14 16 7 C 0.05 0.41 6.17 85.56 0.53 0.94 16 8 N -0.70 -9.91 6.13 -517.93 -3.17 -13.09 16 9 C 0.08 0.72 5.20 86.30 0.45 1.17 16 10 C -0.09 -1.23 3.30 -9.26 -0.03 -1.26 16 11 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 12 C -0.11 -1.07 6.45 31.92 0.21 -0.86 16 13 C 0.08 1.53 6.47 86.73 0.56 2.10 16 14 N -0.62 -16.97 3.33 -811.80 -2.70 -19.67 16 15 C 0.54 20.89 7.87 87.66 0.69 21.58 16 16 O -0.57 -26.78 16.12 -3.04 -0.05 -26.83 16 17 C -0.10 -4.07 5.35 71.24 0.38 -3.68 16 18 S -0.18 -9.43 18.55 -56.49 -1.05 -10.47 16 19 C -0.53 -31.46 10.04 67.95 0.68 -30.77 16 20 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 21 C 0.05 2.94 5.50 84.86 0.47 3.41 16 22 N -0.91 -56.22 13.97 21.65 0.30 -55.92 16 23 Si 0.91 45.97 27.74 68.60 1.90 47.88 16 24 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.24 -12.23 6.74 99.48 0.67 -11.56 16 27 C 0.10 2.36 5.61 86.85 0.49 2.84 16 28 H 0.25 -0.37 7.80 -4.42 -0.03 -0.41 16 29 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.42 1.59 8.45 -92.71 -0.78 0.80 16 32 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.34 6.36 7.60 -89.69 -0.68 5.68 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.34 8.10 -2.38 -0.02 0.32 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.10 0.64 8.05 -2.39 -0.02 0.62 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 42 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 43 H 0.28 15.75 8.31 -92.70 -0.77 14.98 16 44 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 45 H 0.05 1.53 7.94 -2.39 -0.02 1.51 16 Total: -1.00 -86.67 399.03 -0.45 -87.12 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.50 Total: 10.28 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 7.48 Total: 5.66 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -8.18 Total: -98.49 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.10 Total: -41.97 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.88 kcal Atomic # 16 Polarization: -9.43 SS G_CDS: -1.05 Total: -10.47 kcal Total: -86.67 -0.45 -87.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731649517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.995 kcal (2) G-P(sol) polarization free energy of solvation -86.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds