Wall clock time and date at job start Wed Apr 1 2020 01:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47357 * 180.02562 * 9 7 6 11 11 N 1.46496 * 109.47320 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99743 * 179.97438 * 11 10 9 13 13 O 1.21698 * 120.00278 * 0.02562 * 12 11 10 14 14 C 1.46586 * 119.99703 * 180.02562 * 12 11 10 15 15 C 1.36645 * 125.45659 * 180.02562 * 14 12 11 16 16 C 1.37471 * 113.29633 * 180.02562 * 15 14 12 17 17 C 1.33815 * 115.10248 * 359.97438 * 16 15 14 18 18 S 1.70624 * 110.95454 * 359.72534 * 17 16 15 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.36941 * 119.99583 * 85.00384 * 19 3 2 21 21 H 1.07999 * 120.00378 * 359.97438 * 20 19 3 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99719 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47045 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47021 * 120.00069 * 24 22 20 27 27 H 1.48503 * 109.46562 * 240.00024 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 37 37 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 38 38 H 1.09001 * 109.47125 * 300.00102 * 10 9 7 39 39 H 1.09008 * 109.46917 * 59.99865 * 10 9 7 40 40 H 0.97004 * 120.00126 * 0.02562 * 11 10 9 41 41 H 1.07996 * 123.35547 * 359.97067 * 15 14 12 42 42 H 1.08004 * 122.45123 * 180.02562 * 16 15 14 43 43 H 1.08005 * 124.52403 * 180.02562 * 17 16 15 44 44 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 45 45 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4229 4.4768 0.0897 11 7 7.9211 5.8493 -0.0302 12 6 9.2438 6.0955 0.0506 13 8 10.0242 5.1777 0.2227 14 6 9.7422 7.4688 -0.0688 15 6 11.0545 7.8442 -0.0045 16 6 11.2401 9.1988 -0.1470 17 6 10.1202 9.9099 -0.3225 18 16 8.7479 8.8961 -0.3257 19 7 1.6525 2.0974 -1.2519 20 6 0.4156 2.6734 -1.3689 21 1 -0.2743 2.6446 -0.5385 22 6 0.0486 3.2944 -2.5549 23 7 0.8896 3.3300 -3.5668 24 14 -1.6383 4.0807 -2.7143 25 1 -2.3881 3.9056 -1.4445 26 1 -1.4840 5.5292 -3.0029 27 1 -2.3841 3.4318 -3.8225 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 5.6133 4.8818 -1.0062 37 1 5.4672 5.0880 0.7556 38 1 7.7081 4.0699 1.0598 39 1 7.8535 3.8639 -0.7022 40 1 7.2991 6.5809 -0.1670 41 1 11.8651 7.1463 0.1443 42 1 12.2184 9.6557 -0.1201 43 1 10.0896 10.9819 -0.4504 44 1 2.2720 2.1231 -1.9978 45 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732221143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:40 Heat of formation + Delta-G solvation = -41.551825 kcal Electronic energy + Delta-G solvation = -25840.212201 eV Core-core repulsion = 21984.253464 eV Total energy + Delta-G solvation = -3855.958737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.07006 -39.38952 -37.83300 -36.79782 -35.28533 -33.74034 -32.43481 -31.56197 -29.99452 -29.68688 -27.89598 -25.65816 -24.21482 -23.35533 -22.28157 -21.51269 -20.30459 -19.91927 -19.53258 -18.82602 -17.41726 -16.89607 -16.33600 -16.11500 -15.87041 -15.58525 -15.28679 -15.04246 -14.88078 -14.14682 -13.87358 -13.72638 -13.48414 -13.21293 -13.15378 -13.12124 -12.94850 -12.64345 -12.58622 -12.17521 -12.01482 -11.58660 -11.43176 -11.37927 -11.01579 -10.94437 -10.77611 -10.46971 -10.35892 -10.22915 -10.04582 -9.65512 -9.57806 -9.44327 -9.17672 -9.01426 -8.99123 -8.67733 -7.08935 -5.87228 -3.16420 0.13851 1.07699 1.47911 2.04193 2.75201 2.86232 2.95959 3.34668 3.41675 3.43551 3.61900 4.43473 4.49129 4.58372 4.72187 4.91486 4.97129 5.04208 5.09039 5.36371 5.38943 5.42743 5.52254 5.55721 5.75412 5.77318 5.88335 5.88665 5.92881 5.93523 5.94098 6.11273 6.14824 6.39099 6.51063 6.54326 6.57643 6.85176 6.98868 7.16102 7.20612 7.61813 7.86261 7.89937 8.30134 8.49658 9.42286 9.97191 10.33165 11.34616 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.002082 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.515009 B =13447.288761 C =15218.816678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.710 5.710 7 C 0.515 3.485 8 O -0.552 6.552 9 C -0.156 4.156 10 C 0.137 3.863 11 N -0.727 5.727 12 C 0.590 3.410 13 O -0.525 6.525 14 C -0.266 4.266 15 C -0.057 4.057 16 C -0.150 4.150 17 C -0.230 4.230 18 S 0.203 5.797 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.074 0.926 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.902 3.098 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.032 0.968 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.411 0.589 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.398 0.602 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.169 0.831 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.864 12.142 8.226 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.361 5.361 7 C 0.300 3.700 8 O -0.430 6.430 9 C -0.197 4.197 10 C 0.014 3.986 11 N -0.378 5.378 12 C 0.375 3.625 13 O -0.403 6.403 14 C -0.386 4.386 15 C -0.090 4.090 16 C -0.181 4.181 17 C -0.368 4.368 18 S 0.470 5.530 19 N -0.364 5.364 20 C -0.367 4.367 21 H 0.092 0.908 22 C -0.208 4.208 23 N -0.577 5.577 24 Si 0.733 3.267 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.248 0.752 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.232 0.768 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.187 0.813 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.206 11.139 8.324 19.879 hybrid contribution 0.110 1.083 -0.516 1.205 sum 14.316 12.223 7.808 20.379 Atomic orbital electron populations 1.21770 0.95726 0.99655 1.03220 1.22070 0.96963 0.98407 1.00062 1.20570 0.89943 0.92822 0.91409 0.92841 1.21681 0.95599 0.82601 1.01139 1.45960 1.06987 1.10929 1.72260 1.20166 0.82701 0.90331 0.76782 1.90710 1.56001 1.46467 1.49852 1.21806 0.96030 0.96377 1.05443 1.21092 0.91971 0.81457 1.04094 1.45873 1.06949 1.10457 1.74568 1.16906 0.82238 0.86524 0.76783 1.90862 1.55820 1.44669 1.48904 1.24687 0.98408 0.97358 1.18169 1.20833 0.95603 0.95904 0.96649 1.20073 0.99877 0.93159 1.05035 1.25354 0.97458 1.05256 1.08724 1.83085 1.08659 0.95265 1.65986 1.42467 1.16773 1.65846 1.11291 1.19252 0.91952 1.27546 0.97999 0.90847 1.24737 0.98052 1.01630 0.96387 1.69669 1.35103 1.48949 1.04001 0.86197 0.84128 0.78849 0.77478 1.20559 1.21936 1.21939 0.94864 0.89689 0.94126 0.93833 0.92510 0.91839 0.91788 0.75250 0.87805 0.88253 0.90196 0.90082 0.76803 0.82810 0.83639 0.81305 0.78101 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.18 37.16 0.34 -2.20 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.16 2.88 2.59 -67.93 -0.18 2.70 16 4 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 5 C 0.11 1.85 5.23 -4.04 -0.02 1.83 16 6 N -0.71 -10.83 5.39 -60.29 -0.32 -11.16 16 7 C 0.52 7.74 7.83 -10.98 -0.09 7.65 16 8 O -0.55 -10.21 15.98 5.56 0.09 -10.12 16 9 C -0.16 -1.69 5.81 -27.88 -0.16 -1.85 16 10 C 0.14 1.66 4.96 -4.04 -0.02 1.64 16 11 N -0.73 -7.59 5.55 -61.65 -0.34 -7.93 16 12 C 0.59 7.36 7.78 -12.89 -0.10 7.26 16 13 O -0.52 -8.55 16.84 5.19 0.09 -8.46 16 14 C -0.27 -2.64 6.45 -36.79 -0.24 -2.88 16 15 C -0.06 -0.51 10.01 -40.44 -0.40 -0.91 16 16 C -0.15 -1.03 10.15 -41.41 -0.42 -1.45 16 17 C -0.23 -1.42 10.92 29.18 0.32 -1.10 16 18 S 0.20 1.40 22.16 -107.50 -2.38 -0.98 16 19 N -0.72 -15.75 4.51 -53.42 -0.24 -15.99 16 20 C -0.24 -5.79 7.75 -15.06 -0.12 -5.90 16 21 H 0.07 1.77 7.32 -52.49 -0.38 1.38 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -25.98 13.06 55.49 0.72 -25.26 16 24 Si 0.90 20.90 29.55 -169.99 -5.02 15.88 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.41 6.21 8.14 -40.82 -0.33 5.88 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.08 1.14 8.10 -51.92 -0.42 0.72 16 40 H 0.40 3.08 7.59 -40.82 -0.31 2.77 16 41 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.17 0.63 8.06 -52.48 -0.42 0.21 16 44 H 0.38 9.26 7.80 -40.82 -0.32 8.94 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -31.77 392.88 -9.53 -41.29 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -6.70 Total: 14.82 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.33 Total: 1.99 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.18 Total: -60.34 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.18 Total: -18.58 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.38 Total: -0.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.77 -9.53 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732221143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.261 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds