Wall clock time and date at job start Wed Apr 1 2020 01:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47357 * 180.02562 * 9 7 6 11 11 N 1.46496 * 109.47320 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99743 * 179.97438 * 11 10 9 13 13 O 1.21698 * 120.00278 * 0.02562 * 12 11 10 14 14 C 1.46586 * 119.99703 * 180.02562 * 12 11 10 15 15 C 1.36645 * 125.45659 * 180.02562 * 14 12 11 16 16 C 1.37471 * 113.29633 * 180.02562 * 15 14 12 17 17 C 1.33815 * 115.10248 * 359.97438 * 16 15 14 18 18 S 1.70624 * 110.95454 * 359.72534 * 17 16 15 19 19 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 20 20 C 1.36941 * 119.99583 * 85.00384 * 19 3 2 21 21 H 1.07999 * 120.00378 * 359.97438 * 20 19 3 22 22 C 1.38814 * 119.99657 * 179.97438 * 20 19 3 23 23 N 1.31616 * 120.00233 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99719 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47045 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47021 * 120.00069 * 24 22 20 27 27 H 1.48503 * 109.46562 * 240.00024 * 24 22 20 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 34 34 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 35 35 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 36 36 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 37 37 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 38 38 H 1.09001 * 109.47125 * 300.00102 * 10 9 7 39 39 H 1.09008 * 109.46917 * 59.99865 * 10 9 7 40 40 H 0.97004 * 120.00126 * 0.02562 * 11 10 9 41 41 H 1.07996 * 123.35547 * 359.97067 * 15 14 12 42 42 H 1.08004 * 122.45123 * 180.02562 * 16 15 14 43 43 H 1.08005 * 124.52403 * 180.02562 * 17 16 15 44 44 H 0.96999 * 120.00274 * 264.99733 * 19 3 2 45 45 H 0.97001 * 119.99757 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4229 4.4768 0.0897 11 7 7.9211 5.8493 -0.0302 12 6 9.2438 6.0955 0.0506 13 8 10.0242 5.1777 0.2227 14 6 9.7422 7.4688 -0.0688 15 6 11.0545 7.8442 -0.0045 16 6 11.2401 9.1988 -0.1470 17 6 10.1202 9.9099 -0.3225 18 16 8.7479 8.8961 -0.3257 19 7 1.6525 2.0974 -1.2519 20 6 0.4156 2.6734 -1.3689 21 1 -0.2743 2.6446 -0.5385 22 6 0.0486 3.2944 -2.5549 23 7 0.8896 3.3300 -3.5668 24 14 -1.6383 4.0807 -2.7143 25 1 -2.3881 3.9056 -1.4445 26 1 -1.4840 5.5292 -3.0029 27 1 -2.3841 3.4318 -3.8225 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8499 1.0378 1.0961 34 1 3.9954 0.8311 -0.6659 35 1 3.4409 3.5484 -0.1309 36 1 5.6133 4.8818 -1.0062 37 1 5.4672 5.0880 0.7556 38 1 7.7081 4.0699 1.0598 39 1 7.8535 3.8639 -0.7022 40 1 7.2991 6.5809 -0.1670 41 1 11.8651 7.1463 0.1443 42 1 12.2184 9.6557 -0.1201 43 1 10.0896 10.9819 -0.4504 44 1 2.2720 2.1231 -1.9978 45 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732221143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:14:39 Heat of formation + Delta-G solvation = -64.284695 kcal Electronic energy + Delta-G solvation = -25841.197972 eV Core-core repulsion = 21984.253464 eV Total energy + Delta-G solvation = -3856.944508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09490 -40.56075 -38.49908 -38.26420 -36.33166 -35.21055 -34.12564 -32.54329 -31.47727 -30.63690 -29.30180 -26.52278 -25.58440 -24.70623 -23.53579 -22.40452 -21.64797 -21.14944 -20.28640 -19.65545 -19.16257 -18.07762 -17.23302 -17.11252 -16.89450 -16.83264 -16.59613 -16.14381 -15.83914 -15.76764 -15.16641 -14.82076 -14.70224 -14.64929 -14.35773 -14.08106 -13.85044 -13.68842 -13.63853 -13.21127 -13.01470 -12.94670 -12.80045 -12.76130 -12.50530 -12.33170 -12.05331 -11.95738 -11.84852 -11.60371 -11.38046 -11.31765 -10.98738 -10.81304 -10.39652 -9.98606 -9.84523 -9.52251 -8.94909 -7.85327 -5.12063 -0.51174 0.48391 0.92532 1.39741 1.50901 1.54320 1.61186 1.65579 1.80975 2.11296 2.48524 2.62183 3.48692 3.56447 3.81567 3.90081 3.98017 4.01378 4.03986 4.14955 4.35312 4.40672 4.48436 4.51218 4.54628 4.58492 4.79001 4.79938 4.85831 4.90429 5.03006 5.12213 5.15658 5.19374 5.22666 5.23057 5.35690 5.50685 5.60207 5.64883 5.73370 6.31557 6.35145 6.62742 7.00238 7.27777 7.43344 8.14828 8.39982 9.37631 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013302 B = 0.002082 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.515009 B =13447.288761 C =15218.816678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.165 3.835 4 H 0.062 0.938 5 C 0.122 3.878 6 N -0.708 5.708 7 C 0.512 3.488 8 O -0.590 6.590 9 C -0.142 4.142 10 C 0.144 3.856 11 N -0.713 5.713 12 C 0.586 3.414 13 O -0.576 6.576 14 C -0.305 4.305 15 C -0.060 4.060 16 C -0.161 4.161 17 C -0.218 4.218 18 S 0.242 5.758 19 N -0.726 5.726 20 C -0.212 4.212 21 H 0.080 0.920 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.957 3.043 25 H -0.267 1.267 26 H -0.297 1.297 27 H -0.305 1.305 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.145 0.855 42 H 0.169 0.831 43 H 0.201 0.799 44 H 0.373 0.627 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.153 14.202 9.602 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.057 3.943 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.359 5.359 7 C 0.299 3.701 8 O -0.471 6.471 9 C -0.182 4.182 10 C 0.020 3.980 11 N -0.365 5.365 12 C 0.374 3.626 13 O -0.458 6.458 14 C -0.425 4.425 15 C -0.095 4.095 16 C -0.191 4.191 17 C -0.356 4.356 18 S 0.509 5.491 19 N -0.367 5.367 20 C -0.344 4.344 21 H 0.098 0.902 22 C -0.265 4.265 23 N -0.619 5.619 24 Si 0.788 3.212 25 H -0.191 1.191 26 H -0.224 1.224 27 H -0.234 1.234 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.251 0.749 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.250 0.750 41 H 0.163 0.837 42 H 0.186 0.814 43 H 0.218 0.782 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.441 13.221 9.749 21.225 hybrid contribution 0.360 0.432 -0.866 1.033 sum 13.802 13.653 8.883 21.349 Atomic orbital electron populations 1.21699 0.95940 1.00543 1.01843 1.22006 0.96662 0.97602 1.00930 1.20706 0.90900 0.93128 0.89609 0.92051 1.21543 0.94346 0.83160 1.01276 1.45943 1.07257 1.10571 1.72105 1.20804 0.82135 0.91590 0.75537 1.90698 1.56782 1.48097 1.51573 1.21745 0.94691 0.94088 1.07634 1.20850 0.92870 0.81993 1.02264 1.45690 1.06799 1.10232 1.73773 1.17343 0.82268 0.87281 0.75733 1.90822 1.57024 1.46512 1.51434 1.24549 0.99651 0.97274 1.21052 1.21025 0.95244 0.97099 0.96145 1.20244 1.01381 0.92086 1.05366 1.25817 0.96760 1.06673 1.06320 1.82895 1.08007 0.93273 1.64929 1.42579 1.15785 1.66010 1.12327 1.19526 0.92467 1.25001 0.97438 0.90175 1.25345 1.00806 1.03627 0.96706 1.69805 1.36663 1.51052 1.04335 0.85305 0.81076 0.77501 0.77280 1.19116 1.22441 1.23367 0.93018 0.93227 0.93096 0.90806 0.93780 0.90396 0.93427 0.74928 0.86109 0.84830 0.91812 0.92634 0.74972 0.83701 0.81395 0.78244 0.79541 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.18 71.98 0.66 -4.01 16 2 C -0.13 -4.15 5.61 30.60 0.17 -3.98 16 3 C 0.17 5.58 2.59 44.99 0.12 5.70 16 4 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 5 C 0.12 3.81 5.23 86.38 0.45 4.26 16 6 N -0.71 -20.83 5.39 -463.06 -2.49 -23.32 16 7 C 0.51 15.08 7.83 87.66 0.69 15.76 16 8 O -0.59 -22.10 15.98 -3.03 -0.05 -22.15 16 9 C -0.14 -2.87 5.81 29.85 0.17 -2.70 16 10 C 0.14 3.55 4.96 86.38 0.43 3.98 16 11 N -0.71 -14.72 5.55 -467.17 -2.59 -17.31 16 12 C 0.59 15.09 7.78 86.42 0.67 15.76 16 13 O -0.58 -20.02 16.84 -4.34 -0.07 -20.10 16 14 C -0.31 -5.97 6.45 24.08 0.16 -5.82 16 15 C -0.06 -1.07 10.01 21.72 0.22 -0.86 16 16 C -0.16 -1.87 10.15 21.08 0.21 -1.66 16 17 C -0.22 -2.00 10.92 66.81 0.73 -1.27 16 18 S 0.24 2.79 22.16 -56.49 -1.25 1.53 16 19 N -0.73 -31.27 4.51 -322.93 -1.46 -32.72 16 20 C -0.21 -10.20 7.75 84.03 0.65 -9.55 16 21 H 0.08 3.71 7.32 -2.91 -0.02 3.69 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.97 -54.79 13.06 21.65 0.28 -54.51 16 24 Si 0.96 42.94 29.55 68.60 2.03 44.97 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.31 -14.25 7.11 99.48 0.71 -13.54 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.97 5.99 -2.39 -0.01 1.96 16 30 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.41 11.87 8.14 -92.71 -0.75 11.12 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.06 1.65 8.10 -2.38 -0.02 1.64 16 40 H 0.41 5.78 7.59 -92.71 -0.70 5.07 16 41 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 42 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.20 0.59 8.06 -2.91 -0.02 0.56 16 44 H 0.37 18.00 7.80 -92.71 -0.72 17.28 16 45 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -71.01 392.88 -0.96 -71.97 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -1.15 Total: 39.34 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 5.80 Total: 12.30 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -6.26 Total: -127.87 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.12 Total: -42.25 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.25 Total: 1.53 kcal Total: -71.01 -0.96 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732221143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.686 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds