Wall clock time and date at job start Wed Apr 1 2020 01:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00533 * 2 1 4 4 C 1.50700 * 109.47420 * 179.97438 * 3 2 1 5 5 N 1.29433 * 124.80309 * 90.01880 * 4 3 2 6 6 C 1.30938 * 117.36011 * 179.97438 * 5 4 3 7 7 C 1.35658 * 114.19488 * 0.02562 * 6 5 4 8 8 C 1.46688 * 126.13268 * 179.97438 * 7 6 5 9 9 O 1.21684 * 119.99477 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99897 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99731 * 174.98519 * 10 8 7 12 12 C 1.53009 * 109.46918 * 304.29560 * 11 10 8 13 13 C 1.52999 * 109.47140 * 64.29412 * 11 10 8 14 14 N 1.46502 * 109.47029 * 60.00230 * 13 11 10 15 15 C 1.36933 * 119.99834 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00484 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99899 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99849 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99920 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47266 * 89.99886 * 19 17 15 21 21 H 1.48502 * 109.47158 * 209.99586 * 19 17 15 22 22 H 1.48498 * 109.47190 * 329.99619 * 19 17 15 23 23 C 1.53001 * 109.47268 * 184.29765 * 11 10 8 24 24 C 1.52998 * 117.49827 * 132.75907 * 23 11 10 25 25 C 1.53001 * 117.49634 * 64.09707 * 23 11 10 26 26 S 1.70945 * 124.80299 * 269.99941 * 4 3 2 27 27 H 1.08998 * 109.46883 * 300.00486 * 1 2 3 28 28 H 1.08998 * 109.46732 * 60.00392 * 1 2 3 29 29 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46810 * 59.99047 * 3 2 1 31 31 H 1.09002 * 109.46639 * 299.99588 * 3 2 1 32 32 H 1.08000 * 122.89882 * 179.73480 * 6 5 4 33 33 H 0.96992 * 120.00326 * 354.98332 * 10 8 7 34 34 H 1.08994 * 109.47025 * 60.00257 * 12 11 10 35 35 H 1.08999 * 109.46655 * 179.97438 * 12 11 10 36 36 H 1.08992 * 109.46977 * 300.00119 * 12 11 10 37 37 H 1.09007 * 109.46825 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47491 * 300.00164 * 13 11 10 39 39 H 0.96998 * 120.00027 * 0.02562 * 14 13 11 40 40 H 0.96998 * 119.99851 * 180.02562 * 18 17 15 41 41 H 1.08996 * 115.54781 * 278.43500 * 23 11 10 42 42 H 1.08998 * 117.50121 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49337 * 145.02521 * 24 23 11 44 44 H 1.08999 * 117.49619 * 214.97748 * 25 23 11 45 45 H 1.08996 * 117.50440 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5127 1.1864 0.0006 5 7 4.2496 1.1282 -1.0619 6 6 5.5438 1.0261 -0.8917 7 6 5.9330 0.9949 0.4075 8 6 7.3123 0.8855 0.8948 9 8 8.2333 0.8122 0.1029 10 7 7.5593 0.8661 2.2196 11 6 8.9232 0.6467 2.7072 12 6 9.4668 -0.6619 2.1299 13 6 9.8157 1.8084 2.2659 14 7 9.2952 3.0614 2.8187 15 6 9.9350 4.2433 2.5564 16 1 10.8230 4.2520 1.9418 17 6 9.4421 5.4305 3.0806 18 7 8.3596 5.4200 3.8292 19 14 10.3144 7.0429 2.7223 20 1 9.7534 7.6452 1.4862 21 1 10.1175 7.9759 3.8608 22 1 11.7656 6.7897 2.5350 23 6 8.9116 0.5642 4.2350 24 6 9.6794 -0.5879 4.8861 25 6 8.1487 -0.5980 4.8739 26 16 4.4847 1.1096 1.4047 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6888 1.8463 -0.8901 32 1 6.2408 0.9668 -1.7146 33 1 6.8341 0.9975 2.8502 34 1 9.4751 -0.6031 1.0416 35 1 10.4818 -0.8249 2.4924 36 1 8.8310 -1.4895 2.4443 37 1 10.8304 1.6453 2.6292 38 1 9.8240 1.8672 1.1776 39 1 8.4979 3.0536 3.3710 40 1 8.0150 6.2496 4.1952 41 1 8.9010 1.5208 4.7573 42 1 10.1932 -1.2869 4.2261 43 1 10.1737 -0.3893 5.8371 44 1 7.6368 -0.4061 5.8168 45 1 7.6555 -1.3041 4.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732254653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:46 Heat of formation + Delta-G solvation = 15.056839 kcal Electronic energy + Delta-G solvation = -27442.827445 eV Core-core repulsion = 23589.323444 eV Total energy + Delta-G solvation = -3853.504001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36372 -39.65395 -38.14960 -37.59985 -34.68141 -33.52411 -31.95873 -31.04316 -29.78309 -28.38861 -26.49931 -25.88059 -24.35154 -23.59915 -22.42113 -22.06867 -21.66758 -19.55041 -18.90443 -18.48078 -17.17489 -17.08972 -16.92181 -16.03738 -15.79227 -15.55491 -15.16434 -15.02927 -14.65636 -14.46086 -14.09378 -13.86693 -13.66964 -13.19542 -12.97184 -12.76802 -12.64089 -12.36500 -12.12678 -11.96410 -11.82605 -11.63493 -11.41319 -11.08434 -10.87154 -10.79197 -10.75757 -10.22209 -10.20430 -10.08128 -9.95531 -9.82899 -9.65999 -9.54641 -9.49573 -9.06787 -8.78814 -8.66982 -6.83678 -5.72803 -2.98885 0.14544 1.06813 1.50565 2.39092 3.18848 3.32368 3.46257 3.47211 3.51863 3.53166 4.05048 4.11198 4.59104 4.63299 4.74683 4.89843 4.95902 4.97463 5.04882 5.07229 5.09246 5.16495 5.27536 5.30512 5.35266 5.44432 5.63055 5.68859 5.77668 5.96416 6.01385 6.03385 6.19421 6.24018 6.26274 6.42822 6.50905 6.63159 6.67053 6.87219 7.07401 7.49652 7.74866 7.77425 8.41065 8.46687 9.58203 10.15698 10.51580 11.50425 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.003610 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.822162 B = 7753.663501 C = 9276.458901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.037 3.963 5 N -0.459 5.459 6 C 0.109 3.891 7 C -0.271 4.271 8 C 0.601 3.399 9 O -0.517 6.517 10 N -0.701 5.701 11 C 0.203 3.797 12 C -0.165 4.165 13 C 0.144 3.856 14 N -0.726 5.726 15 C -0.229 4.229 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.936 5.936 19 Si 0.905 3.095 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.283 1.283 23 C -0.152 4.152 24 C -0.170 4.170 25 C -0.184 4.184 26 S 0.201 5.799 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.190 0.810 33 H 0.396 0.604 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.046 0.954 39 H 0.381 0.619 40 H 0.253 0.747 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.386 -14.555 -1.791 19.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.059 3.941 4 C -0.238 4.238 5 N -0.175 5.175 6 C -0.049 4.049 7 C -0.395 4.395 8 C 0.386 3.614 9 O -0.395 6.395 10 N -0.351 5.351 11 C 0.118 3.882 12 C -0.224 4.224 13 C 0.015 3.985 14 N -0.371 5.371 15 C -0.361 4.361 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.586 5.586 19 Si 0.737 3.263 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.170 4.170 24 C -0.207 4.207 25 C -0.221 4.221 26 S 0.457 5.543 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.207 0.793 33 H 0.230 0.770 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.215 0.785 40 H 0.063 0.937 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.999 -14.632 -1.811 19.655 hybrid contribution 0.178 1.400 -0.362 1.457 sum -12.821 -13.232 -2.173 18.552 Atomic orbital electron populations 1.22808 0.79974 1.03288 1.00418 1.87958 1.20321 1.26322 1.95552 1.20818 0.84431 0.86033 1.02799 1.26831 1.00488 1.04541 0.91899 1.66129 1.04978 1.15078 1.31294 1.22129 0.90479 0.96590 0.95673 1.26061 0.98565 1.17007 0.97899 1.16531 0.85460 0.76671 0.82778 1.90777 1.43596 1.49714 1.55364 1.45823 1.10757 1.72755 1.05778 1.20094 0.81311 0.96061 0.90769 1.22299 1.00883 0.95566 1.03616 1.21085 0.94151 0.85161 0.98065 1.42235 1.32716 1.01240 1.60861 1.19235 1.06803 0.85044 1.24990 0.91321 1.24674 0.98150 0.97572 1.00746 1.69643 1.23899 1.26146 1.38904 0.86206 0.78930 0.84043 0.77154 1.21884 1.21892 1.20833 1.22569 1.05413 0.95331 0.93734 1.23060 0.94123 1.01147 1.02414 1.22970 0.94700 1.01833 1.02570 1.83869 0.96469 1.63295 1.10625 0.93602 0.93571 0.89142 0.90538 0.89782 0.79320 0.77007 0.90075 0.91275 0.92840 0.95612 0.93651 0.78491 0.93736 0.85855 0.88202 0.88798 0.88826 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.93 10.69 -35.23 -0.38 -4.31 16 3 C 0.14 1.34 6.51 36.01 0.23 1.57 16 4 C 0.04 0.47 7.01 -13.29 -0.09 0.38 16 5 N -0.46 -6.72 10.51 -11.50 -0.12 -6.84 16 6 C 0.11 1.64 11.09 -18.86 -0.21 1.43 16 7 C -0.27 -4.19 6.48 -37.09 -0.24 -4.43 16 8 C 0.60 10.56 7.19 -12.85 -0.09 10.47 16 9 O -0.52 -10.36 13.10 5.20 0.07 -10.29 16 10 N -0.70 -11.40 4.72 -48.89 -0.23 -11.63 16 11 C 0.20 3.36 0.54 -131.81 -0.07 3.29 16 12 C -0.17 -2.40 6.98 37.16 0.26 -2.14 16 13 C 0.14 3.06 5.03 -4.04 -0.02 3.04 16 14 N -0.73 -18.38 5.04 -59.91 -0.30 -18.68 16 15 C -0.23 -6.54 9.99 -15.06 -0.15 -6.69 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.94 -28.04 13.06 55.49 0.72 -27.32 16 19 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 C -0.15 -2.28 4.84 -90.62 -0.44 -2.72 16 24 C -0.17 -2.09 9.64 -26.69 -0.26 -2.35 16 25 C -0.18 -2.17 9.82 -26.69 -0.26 -2.43 16 26 S 0.20 2.51 22.32 -107.50 -2.40 0.11 16 27 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.19 2.65 8.06 -52.49 -0.42 2.22 16 33 H 0.40 5.86 7.67 -40.82 -0.31 5.54 16 34 H 0.08 1.32 6.03 -51.93 -0.31 1.01 16 35 H 0.07 0.91 6.78 -51.93 -0.35 0.56 16 36 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 1.07 6.31 -51.93 -0.33 0.75 16 39 H 0.38 9.87 6.62 -40.82 -0.27 9.60 16 40 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.12 2.22 7.08 -51.93 -0.37 1.86 16 42 H 0.10 1.13 5.88 -51.93 -0.31 0.83 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.02 7.34 -51.93 -0.38 0.64 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -33.81 381.99 -8.57 -42.39 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.34 Total: 12.78 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.33 Total: 0.17 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.07 Total: -64.47 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.31 Total: -14.60 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.40 Total: 0.11 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.81 -8.57 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732254653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.443 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds