Wall clock time and date at job start Wed Apr 1 2020 01:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 114.00533 * 2 1 4 4 C 1.50700 * 109.47420 * 179.97438 * 3 2 1 5 5 N 1.29433 * 124.80309 * 90.01880 * 4 3 2 6 6 C 1.30938 * 117.36011 * 179.97438 * 5 4 3 7 7 C 1.35658 * 114.19488 * 0.02562 * 6 5 4 8 8 C 1.46688 * 126.13268 * 179.97438 * 7 6 5 9 9 O 1.21684 * 119.99477 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99897 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99731 * 174.98519 * 10 8 7 12 12 C 1.53009 * 109.46918 * 304.29560 * 11 10 8 13 13 C 1.52999 * 109.47140 * 64.29412 * 11 10 8 14 14 N 1.46502 * 109.47029 * 60.00230 * 13 11 10 15 15 C 1.36933 * 119.99834 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00484 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99899 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99849 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99920 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47266 * 89.99886 * 19 17 15 21 21 H 1.48502 * 109.47158 * 209.99586 * 19 17 15 22 22 H 1.48498 * 109.47190 * 329.99619 * 19 17 15 23 23 C 1.53001 * 109.47268 * 184.29765 * 11 10 8 24 24 C 1.52998 * 117.49827 * 132.75907 * 23 11 10 25 25 C 1.53001 * 117.49634 * 64.09707 * 23 11 10 26 26 S 1.70945 * 124.80299 * 269.99941 * 4 3 2 27 27 H 1.08998 * 109.46883 * 300.00486 * 1 2 3 28 28 H 1.08998 * 109.46732 * 60.00392 * 1 2 3 29 29 H 1.08998 * 109.46997 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46810 * 59.99047 * 3 2 1 31 31 H 1.09002 * 109.46639 * 299.99588 * 3 2 1 32 32 H 1.08000 * 122.89882 * 179.73480 * 6 5 4 33 33 H 0.96992 * 120.00326 * 354.98332 * 10 8 7 34 34 H 1.08994 * 109.47025 * 60.00257 * 12 11 10 35 35 H 1.08999 * 109.46655 * 179.97438 * 12 11 10 36 36 H 1.08992 * 109.46977 * 300.00119 * 12 11 10 37 37 H 1.09007 * 109.46825 * 179.97438 * 13 11 10 38 38 H 1.08994 * 109.47491 * 300.00164 * 13 11 10 39 39 H 0.96998 * 120.00027 * 0.02562 * 14 13 11 40 40 H 0.96998 * 119.99851 * 180.02562 * 18 17 15 41 41 H 1.08996 * 115.54781 * 278.43500 * 23 11 10 42 42 H 1.08998 * 117.50121 * 0.02562 * 24 23 11 43 43 H 1.09003 * 117.49337 * 145.02521 * 24 23 11 44 44 H 1.08999 * 117.49619 * 214.97748 * 25 23 11 45 45 H 1.08996 * 117.50440 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5127 1.1864 0.0006 5 7 4.2496 1.1282 -1.0619 6 6 5.5438 1.0261 -0.8917 7 6 5.9330 0.9949 0.4075 8 6 7.3123 0.8855 0.8948 9 8 8.2333 0.8122 0.1029 10 7 7.5593 0.8661 2.2196 11 6 8.9232 0.6467 2.7072 12 6 9.4668 -0.6619 2.1299 13 6 9.8157 1.8084 2.2659 14 7 9.2952 3.0614 2.8187 15 6 9.9350 4.2433 2.5564 16 1 10.8230 4.2520 1.9418 17 6 9.4421 5.4305 3.0806 18 7 8.3596 5.4200 3.8292 19 14 10.3144 7.0429 2.7223 20 1 9.7534 7.6452 1.4862 21 1 10.1175 7.9759 3.8608 22 1 11.7656 6.7897 2.5350 23 6 8.9116 0.5642 4.2350 24 6 9.6794 -0.5879 4.8861 25 6 8.1487 -0.5980 4.8739 26 16 4.4847 1.1096 1.4047 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6888 1.8463 -0.8901 32 1 6.2408 0.9668 -1.7146 33 1 6.8341 0.9975 2.8502 34 1 9.4751 -0.6031 1.0416 35 1 10.4818 -0.8249 2.4924 36 1 8.8310 -1.4895 2.4443 37 1 10.8304 1.6453 2.6292 38 1 9.8240 1.8672 1.1776 39 1 8.4979 3.0536 3.3710 40 1 8.0150 6.2496 4.1952 41 1 8.9010 1.5208 4.7573 42 1 10.1932 -1.2869 4.2261 43 1 10.1737 -0.3893 5.8371 44 1 7.6368 -0.4061 5.8168 45 1 7.6555 -1.3041 4.2059 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732254653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:45 Heat of formation + Delta-G solvation = -9.267193 kcal Electronic energy + Delta-G solvation = -27443.882214 eV Core-core repulsion = 23589.323444 eV Total energy + Delta-G solvation = -3854.558770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63448 -40.78242 -39.05950 -38.65042 -36.38377 -35.09720 -33.37394 -32.52788 -31.24466 -29.36308 -27.61420 -27.11889 -25.56954 -24.86361 -24.15223 -23.19300 -22.79957 -20.77312 -20.15725 -19.61390 -19.24231 -18.21730 -17.61057 -17.11721 -16.82067 -16.68143 -16.49866 -16.32659 -16.08133 -15.78015 -15.40454 -15.14338 -15.06515 -14.88450 -14.25629 -13.82682 -13.73248 -13.71029 -13.28936 -13.24709 -13.08783 -12.81049 -12.72802 -12.49857 -12.37485 -12.24033 -12.08670 -12.02643 -11.77088 -11.30611 -11.14259 -11.08487 -10.92020 -10.74900 -10.70379 -10.64170 -10.16207 -10.02676 -8.95246 -7.95352 -5.21412 -0.95073 0.02110 0.42910 1.26024 1.43983 1.45624 1.53741 1.93306 2.10834 2.54657 2.60945 3.01204 3.26519 3.37158 3.56077 3.73200 3.78973 3.89673 3.93144 4.12239 4.15873 4.22632 4.23913 4.34529 4.44506 4.54986 4.60201 4.60850 4.78097 4.85282 4.86243 4.90424 4.91108 4.96937 5.02904 5.11589 5.25882 5.32899 5.43442 5.47825 5.56957 6.03679 6.27093 6.37945 6.50033 7.08715 7.34586 8.08500 8.36863 9.27583 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.003610 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.822162 B = 7753.663501 C = 9276.458901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.136 3.864 4 C 0.039 3.961 5 N -0.481 5.481 6 C 0.108 3.892 7 C -0.306 4.306 8 C 0.597 3.403 9 O -0.551 6.551 10 N -0.696 5.696 11 C 0.211 3.789 12 C -0.157 4.157 13 C 0.145 3.855 14 N -0.730 5.730 15 C -0.243 4.243 16 H 0.064 0.936 17 C -0.069 4.069 18 N -0.962 5.962 19 Si 0.967 3.033 20 H -0.292 1.292 21 H -0.290 1.290 22 H -0.274 1.274 23 C -0.178 4.178 24 C -0.158 4.158 25 C -0.158 4.158 26 S 0.249 5.751 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.189 0.811 33 H 0.402 0.598 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.755 -15.531 -0.784 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C 0.056 3.944 4 C -0.235 4.235 5 N -0.197 5.197 6 C -0.050 4.050 7 C -0.430 4.430 8 C 0.382 3.618 9 O -0.432 6.432 10 N -0.346 5.346 11 C 0.125 3.875 12 C -0.215 4.215 13 C 0.017 3.983 14 N -0.373 5.373 15 C -0.375 4.375 16 H 0.082 0.918 17 C -0.261 4.261 18 N -0.613 5.613 19 Si 0.797 3.203 20 H -0.219 1.219 21 H -0.216 1.216 22 H -0.199 1.199 23 C -0.197 4.197 24 C -0.196 4.196 25 C -0.195 4.195 26 S 0.506 5.494 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.112 0.888 32 H 0.206 0.794 33 H 0.238 0.762 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.107 0.893 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.379 -15.632 -0.784 21.254 hybrid contribution 0.523 1.684 -0.683 1.890 sum -13.856 -13.949 -1.466 19.716 Atomic orbital electron populations 1.23034 0.77920 1.04400 1.01706 1.87911 1.22540 1.26489 1.95823 1.21040 0.82244 0.86422 1.04667 1.27551 1.02100 1.02159 0.91665 1.66203 1.04729 1.16549 1.32239 1.22227 0.91002 0.96037 0.95763 1.25929 0.98868 1.19319 0.98921 1.16846 0.86080 0.75983 0.82842 1.90751 1.44948 1.51331 1.56139 1.45823 1.10909 1.72265 1.05607 1.19944 0.80577 0.94856 0.92095 1.22228 1.02140 0.94956 1.02140 1.21123 0.95250 0.85701 0.96232 1.42296 1.32402 1.01818 1.60758 1.19532 1.06815 0.86532 1.24618 0.91845 1.25408 0.99123 1.00529 1.01063 1.69773 1.25046 1.26653 1.39794 0.85230 0.78269 0.80112 0.76699 1.21921 1.21617 1.19906 1.22261 1.09975 0.95302 0.92195 1.23197 0.94810 0.99113 1.02441 1.23063 0.94645 0.99130 1.02638 1.83600 0.94231 1.62214 1.09346 0.91956 0.92620 0.88213 0.87806 0.88758 0.79449 0.76217 0.92153 0.89862 0.90405 0.95827 0.96281 0.79015 0.94002 0.89270 0.86835 0.88053 0.87527 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.54 10.69 -148.98 -1.59 -9.13 16 3 C 0.14 2.32 6.51 71.24 0.46 2.78 16 4 C 0.04 0.96 7.01 88.46 0.62 1.58 16 5 N -0.48 -13.96 10.51 -190.31 -2.00 -15.96 16 6 C 0.11 3.34 11.09 84.23 0.93 4.27 16 7 C -0.31 -9.58 6.48 23.88 0.15 -9.43 16 8 C 0.60 21.53 7.19 86.45 0.62 22.15 16 9 O -0.55 -23.14 13.10 -4.30 -0.06 -23.19 16 10 N -0.70 -22.81 4.72 -426.82 -2.02 -24.82 16 11 C 0.21 6.99 0.54 3.61 0.00 6.99 16 12 C -0.16 -4.40 6.98 71.99 0.50 -3.90 16 13 C 0.14 6.37 5.03 86.38 0.43 6.80 16 14 N -0.73 -38.06 5.04 -343.44 -1.73 -39.79 16 15 C -0.24 -14.16 9.99 84.04 0.84 -13.32 16 16 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 18 N -0.96 -58.28 13.06 21.65 0.28 -58.00 16 19 Si 0.97 47.47 29.55 68.60 2.03 49.49 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 23 C -0.18 -5.24 4.84 -10.79 -0.05 -5.29 16 24 C -0.16 -3.51 9.64 30.62 0.30 -3.21 16 25 C -0.16 -3.30 9.82 30.62 0.30 -3.00 16 26 S 0.25 5.93 22.32 -56.49 -1.26 4.67 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.19 5.57 8.06 -2.91 -0.02 5.55 16 33 H 0.40 11.81 7.67 -92.71 -0.71 11.10 16 34 H 0.06 1.99 6.03 -2.39 -0.01 1.97 16 35 H 0.08 2.07 6.78 -2.39 -0.02 2.05 16 36 H 0.08 1.80 6.98 -2.39 -0.02 1.78 16 37 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.02 0.95 6.31 -2.39 -0.02 0.94 16 39 H 0.38 20.12 6.62 -92.71 -0.61 19.50 16 40 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.09 3.28 7.08 -2.39 -0.02 3.26 16 42 H 0.11 2.22 5.88 -2.39 -0.01 2.20 16 43 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.11 1.96 7.34 -2.39 -0.02 1.94 16 Total: -1.00 -74.44 381.99 0.20 -74.24 By element: Atomic # 1 Polarization: 38.39 SS G_CDS: -0.29 Total: 38.10 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.83 Total: 4.39 kcal Atomic # 7 Polarization: -133.11 SS G_CDS: -5.46 Total: -138.57 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.65 Total: -32.32 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.26 Total: 4.67 kcal Total: -74.44 0.20 -74.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732254653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.975 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds