Wall clock time and date at job start Wed Apr 1 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47229 * 80.84458 * 3 2 1 5 5 C 1.34775 * 120.00027 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00278 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00005 * 180.02562 * 5 4 3 8 8 N 1.46904 * 109.47252 * 180.02562 * 7 5 4 9 9 C 1.46897 * 111.00029 * 174.69567 * 8 7 5 10 10 C 1.52998 * 112.90606 * 292.29297 * 9 8 7 11 11 N 1.46503 * 109.47233 * 310.79425 * 10 9 8 12 12 C 1.34779 * 119.99798 * 174.81720 * 11 10 9 13 13 O 1.21279 * 120.00251 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99697 * 180.02562 * 12 11 10 15 15 S 1.80995 * 109.47404 * 180.02562 * 14 12 11 16 16 C 1.76198 * 100.00239 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99900 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00305 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47068 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47527 * 120.00089 * 20 18 16 23 23 H 1.48506 * 109.46992 * 239.99736 * 20 18 16 24 24 C 1.53784 * 113.61695 * 63.54151 * 9 8 7 25 25 C 1.53781 * 87.07725 * 89.11417 * 24 9 8 26 26 C 1.53779 * 113.61590 * 161.04318 * 9 8 7 27 27 H 4.40642 * 5.51528 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.47215 * 320.84767 * 3 2 1 29 29 H 1.09000 * 109.46873 * 200.84444 * 3 2 1 30 30 H 0.97003 * 120.00122 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47255 * 59.99404 * 7 5 4 32 32 H 1.09000 * 109.46793 * 299.99647 * 7 5 4 33 33 H 1.00896 * 110.99455 * 298.64634 * 8 7 5 34 34 H 1.09003 * 109.47580 * 70.80141 * 10 9 8 35 35 H 1.09001 * 109.47281 * 190.79792 * 10 9 8 36 36 H 0.96994 * 119.99677 * 354.82587 * 11 10 9 37 37 H 1.09006 * 109.46839 * 300.00013 * 14 12 11 38 38 H 1.09003 * 109.47379 * 59.99567 * 14 12 11 39 39 H 0.96995 * 120.00313 * 180.02562 * 19 18 16 40 40 H 1.08998 * 113.61213 * 334.56924 * 24 9 8 41 41 H 1.08997 * 113.61800 * 203.66575 * 24 9 8 42 42 H 1.09001 * 113.61017 * 139.98386 * 25 24 9 43 43 H 1.08995 * 113.62006 * 270.88105 * 25 24 9 44 44 H 1.08994 * 113.61637 * 156.33356 * 26 9 8 45 45 H 1.09003 * 113.69009 * 25.43333 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2189 -1.3636 5 6 4.4595 -0.2570 -1.6068 6 8 5.2476 -0.1099 -0.6968 7 6 4.9620 -0.4822 -3.0096 8 7 6.4310 -0.4817 -3.0096 9 6 6.9576 -0.8234 -4.3377 10 6 6.6724 -2.2726 -4.7366 11 7 7.0625 -3.1660 -3.6430 12 6 6.8058 -4.4864 -3.7273 13 8 6.2523 -4.9351 -4.7087 14 6 7.2065 -5.4052 -2.6021 15 16 6.7305 -7.1029 -3.0107 16 6 7.3015 -7.9367 -1.5673 17 1 7.7794 -7.3795 -0.7752 18 6 7.1371 -9.3098 -1.4483 19 7 6.5542 -9.9890 -2.4134 20 14 7.7418 -10.1937 0.0822 21 1 8.3558 -9.2112 1.0111 22 1 6.5976 -10.8616 0.7529 23 1 8.7535 -11.2111 -0.3009 24 6 6.5919 0.1987 -5.4271 25 6 7.8820 0.9454 -5.0489 26 6 8.4223 -0.4039 -4.5463 27 1 -1.0500 0.0002 -0.0002 28 1 3.0097 -0.7961 0.6489 29 1 3.0088 0.9612 0.3657 30 1 2.5041 -0.3361 -2.0916 31 1 4.5979 0.3144 -3.6583 32 1 4.5994 -1.4429 -3.3755 33 1 6.7922 0.4063 -2.6949 34 1 5.6081 -2.3908 -4.9403 35 1 7.2433 -2.5224 -5.6309 36 1 7.5054 -2.8071 -2.8582 37 1 8.2861 -5.3553 -2.4592 38 1 6.7042 -5.0973 -1.6850 39 1 6.4390 -10.9485 -2.3301 40 1 5.6831 0.7604 -5.2113 41 1 6.6060 -0.2142 -6.4357 42 1 8.4251 1.3408 -5.9072 43 1 7.7440 1.6825 -4.2579 44 1 8.9368 -0.9815 -5.3141 45 1 8.9923 -0.3282 -3.6203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733712853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:03 Heat of formation + Delta-G solvation = 8.902377 kcal Electronic energy + Delta-G solvation = -26345.115428 eV Core-core repulsion = 22491.344550 eV Total energy + Delta-G solvation = -3853.770879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70679 -39.65749 -38.63435 -35.84075 -34.21233 -33.69728 -32.90835 -32.37314 -29.88952 -28.56890 -27.14377 -26.35212 -25.47916 -25.28882 -22.52995 -20.88923 -20.15711 -19.19930 -19.09906 -17.79542 -17.32327 -16.87187 -16.27401 -16.13725 -16.09233 -15.60676 -15.33201 -14.93451 -14.75277 -14.43242 -14.35198 -13.97440 -13.84954 -13.60348 -13.47692 -13.14091 -12.96469 -12.67575 -12.52339 -12.47084 -11.98926 -11.60103 -11.25853 -11.18434 -11.04211 -11.02629 -10.95699 -10.89718 -10.70485 -10.50139 -10.10489 -9.74177 -9.45529 -9.29829 -9.02288 -8.79621 -8.70186 -8.16031 -6.43133 -6.16515 -3.85945 1.95625 2.30544 2.39357 2.98494 3.14560 3.22739 3.25706 3.32619 3.38749 3.69054 3.83280 3.92096 4.14816 4.25131 4.26201 4.40160 4.43892 4.51187 4.80494 5.02183 5.04835 5.11744 5.18716 5.19857 5.28999 5.33878 5.39590 5.43087 5.45970 5.52537 5.62095 5.68408 5.77704 5.83136 5.89542 5.94899 6.01632 6.26899 6.51155 6.79792 6.96283 7.06824 7.13032 7.65973 7.89055 7.93701 8.41554 8.76261 9.29216 10.91006 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.007964 B = 0.002858 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3514.967068 B = 9793.017368 C =12337.813949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.211 4.211 3 C 0.232 3.768 4 N -0.733 5.733 5 C 0.517 3.483 6 O -0.520 6.520 7 C 0.040 3.960 8 N -0.642 5.642 9 C 0.082 3.918 10 C 0.144 3.856 11 N -0.724 5.724 12 C 0.530 3.470 13 O -0.526 6.526 14 C -0.151 4.151 15 S -0.063 6.063 16 C -0.532 4.532 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.869 5.869 20 Si 0.918 3.082 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.166 4.166 25 C -0.144 4.144 26 C -0.129 4.129 27 H 0.222 0.778 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.404 0.596 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.353 0.647 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.407 0.593 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.267 0.733 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 27.752 -2.131 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.212 4.212 3 C 0.109 3.891 4 N -0.387 5.387 5 C 0.303 3.697 6 O -0.394 6.394 7 C -0.092 4.092 8 N -0.274 5.274 9 C -0.010 4.010 10 C 0.019 3.981 11 N -0.379 5.379 12 C 0.316 3.684 13 O -0.402 6.402 14 C -0.302 4.302 15 S 0.164 5.836 16 C -0.681 4.681 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.206 4.206 25 C -0.182 4.182 26 C -0.166 4.166 27 H 0.239 0.761 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.238 0.762 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.173 0.827 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.242 0.758 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.799 26.302 -2.894 27.088 hybrid contribution 0.356 0.865 1.674 1.918 sum -5.443 27.167 -1.220 27.734 Atomic orbital electron populations 1.25057 0.95985 1.00528 0.97077 1.22913 0.94276 1.01070 1.02918 1.18052 0.83121 1.03210 0.84676 1.45955 1.07405 1.75302 1.10028 1.20572 0.81633 0.76170 0.91352 1.90741 1.54914 1.47749 1.45995 1.21779 0.90196 1.03819 0.93391 1.59899 1.05112 1.38966 1.23397 1.22388 0.96728 0.94115 0.87776 1.21154 1.00454 0.86135 0.90341 1.45803 1.63083 1.06700 1.22287 1.20293 0.78107 0.81964 0.87996 1.90684 1.41266 1.75636 1.32584 1.23509 1.04555 1.02636 0.99512 1.85327 1.78434 0.92205 1.27666 1.22924 1.44949 0.95193 1.04996 0.90892 1.24988 0.94943 0.96437 0.97273 1.70030 1.40530 1.08009 1.31862 0.86125 0.78485 0.79298 0.81652 1.19582 1.20617 1.20611 1.23606 0.98209 0.98369 1.00426 1.22851 0.97175 0.96781 1.01360 1.23097 0.94817 0.96354 1.02370 0.76098 0.88785 0.89105 0.76194 0.91837 0.87344 0.82654 0.91865 0.91226 0.75821 0.89332 0.89307 0.92327 0.91342 0.88994 0.90938 0.90320 0.88825 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 19.25 29.55 0.57 -0.54 16 2 C -0.21 -1.68 13.46 -37.12 -0.50 -2.18 16 3 C 0.23 1.89 6.15 -6.83 -0.04 1.85 16 4 N -0.73 -5.79 5.54 -63.16 -0.35 -6.14 16 5 C 0.52 5.12 7.88 -10.98 -0.09 5.03 16 6 O -0.52 -7.07 16.32 5.56 0.09 -6.98 16 7 C 0.04 0.32 5.78 -4.97 -0.03 0.29 16 8 N -0.64 -5.51 5.39 -100.39 -0.54 -6.05 16 9 C 0.08 0.66 0.74 -130.79 -0.10 0.56 16 10 C 0.14 1.64 4.71 -4.04 -0.02 1.62 16 11 N -0.72 -10.18 5.39 -60.29 -0.32 -10.50 16 12 C 0.53 10.22 7.85 -10.99 -0.09 10.13 16 13 O -0.53 -12.09 15.86 5.56 0.09 -12.00 16 14 C -0.15 -3.21 6.16 36.00 0.22 -2.99 16 15 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 16 C -0.53 -15.54 9.50 30.94 0.29 -15.25 16 17 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 20 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.17 -1.04 7.16 -25.92 -0.19 -1.22 16 25 C -0.14 -0.84 7.75 -25.92 -0.20 -1.04 16 26 C -0.13 -0.93 7.31 -25.92 -0.19 -1.12 16 27 H 0.22 0.71 7.80 -54.09 -0.42 0.29 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.40 2.36 8.45 -40.82 -0.34 2.01 16 31 H 0.06 0.35 6.70 -51.93 -0.35 0.00 16 32 H 0.11 0.96 6.85 -51.93 -0.36 0.60 16 33 H 0.35 2.87 7.79 -39.29 -0.31 2.57 16 34 H 0.06 0.77 7.29 -51.93 -0.38 0.39 16 35 H 0.07 0.82 7.95 -51.93 -0.41 0.40 16 36 H 0.41 5.23 8.14 -40.82 -0.33 4.89 16 37 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 38 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.07 0.38 6.62 -51.93 -0.34 0.04 16 41 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.43 7.75 -51.93 -0.40 0.02 16 44 H 0.09 0.69 7.97 -51.93 -0.41 0.28 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -37.10 398.72 -8.54 -45.63 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.56 Total: 5.85 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.45 Total: -2.84 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.48 Total: -48.56 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.18 Total: -18.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.10 -8.54 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733712853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.535 kcal (2) G-P(sol) polarization free energy of solvation -37.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds