Wall clock time and date at job start Tue Mar 31 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47171 * 2 1 4 4 C 1.50700 * 109.46808 * 119.99727 * 2 1 3 5 5 N 1.28656 * 124.71826 * 120.25172 * 4 2 1 6 6 C 1.33556 * 115.76343 * 180.18666 * 5 4 2 7 7 C 1.47274 * 123.13890 * 179.82239 * 6 5 4 8 8 O 1.21627 * 119.99947 * 179.73275 * 7 6 5 9 9 N 1.34776 * 119.99689 * 359.73397 * 7 6 5 10 10 C 1.46501 * 119.99762 * 174.92241 * 9 7 6 11 11 C 1.53004 * 113.28051 * 307.37281 * 10 9 7 12 12 C 1.53002 * 109.47316 * 292.33857 * 11 10 9 13 13 O 1.42891 * 109.47351 * 184.40914 * 12 11 10 14 14 C 1.53489 * 114.20622 * 174.30940 * 10 9 7 15 15 N 1.47069 * 87.98351 * 220.14294 * 14 10 9 16 16 C 1.36943 * 136.05841 * 206.85462 * 15 14 10 17 17 H 1.08000 * 119.99536 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00067 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00079 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99841 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47314 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47313 * 120.00054 * 20 18 16 23 23 H 1.48501 * 109.47239 * 239.99831 * 20 18 16 24 24 C 1.47066 * 87.88628 * 27.12179 * 15 14 10 25 25 C 1.35206 * 113.72071 * 359.55616 * 6 5 4 26 26 S 1.70770 * 124.72291 * 299.97413 * 4 2 1 27 27 H 1.08994 * 109.47027 * 299.99893 * 1 2 3 28 28 H 1.08995 * 109.46987 * 60.00192 * 1 2 3 29 29 H 1.09001 * 109.46988 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47749 * 240.00083 * 2 1 3 31 31 H 1.08998 * 109.47158 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47008 * 299.99795 * 3 2 1 33 33 H 1.09002 * 109.46888 * 59.99893 * 3 2 1 34 34 H 0.96992 * 120.00408 * 354.91448 * 9 7 6 35 35 H 1.09003 * 109.47063 * 52.33973 * 11 10 9 36 36 H 1.08997 * 109.47432 * 172.33674 * 11 10 9 37 37 H 1.09003 * 109.46801 * 304.41462 * 12 11 10 38 38 H 1.09008 * 109.46929 * 64.40758 * 12 11 10 39 39 H 0.96696 * 114.00308 * 179.97438 * 13 12 11 40 40 H 1.08997 * 113.46973 * 105.36723 * 14 10 9 41 41 H 1.08996 * 113.46846 * 334.92430 * 14 10 9 42 42 H 0.96999 * 120.00163 * 179.97438 * 19 18 16 43 43 H 1.08999 * 113.46965 * 87.65692 * 24 15 14 44 44 H 1.08995 * 113.46917 * 218.09782 * 24 15 14 45 45 H 1.08000 * 125.58778 * 180.19378 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7788 -1.7581 1.2183 6 6 3.1166 -2.2442 2.4156 7 6 3.9611 -3.4380 2.5908 8 8 4.2376 -3.8285 3.7090 9 7 4.4275 -4.0976 1.5120 10 6 5.3569 -5.2170 1.6833 11 6 6.5747 -4.8661 2.5406 12 6 7.4505 -3.8579 1.7941 13 8 8.6381 -3.6081 2.5485 14 6 5.6954 -5.9586 0.3827 15 7 5.6229 -7.2161 1.1419 16 6 6.1782 -8.4636 1.0388 17 1 6.8575 -8.6870 0.2295 18 6 5.8679 -9.4409 1.9744 19 7 5.0396 -9.1687 2.9605 20 14 6.6260 -11.1424 1.8341 21 1 7.5166 -11.1911 0.6469 22 1 7.4158 -11.4349 3.0572 23 1 5.5485 -12.1537 1.6871 24 6 4.6863 -6.5462 2.0568 25 6 2.6155 -1.5347 3.4517 26 16 1.6953 -0.2327 2.8351 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 4.1477 -3.8314 0.6223 35 1 6.2423 -4.4310 3.4831 36 1 7.1507 -5.7696 2.7407 37 1 7.7184 -4.2620 0.8178 38 1 6.9006 -2.9258 1.6630 39 1 9.2419 -2.9768 2.1339 40 1 6.6932 -5.7373 0.0039 41 1 4.9240 -5.8680 -0.3819 42 1 4.8226 -9.8518 3.6141 43 1 3.6460 -6.6122 1.7379 44 1 4.8259 -6.8245 3.1013 45 1 2.7706 -1.7548 4.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734073972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:59 Heat of formation + Delta-G solvation = 10.807241 kcal Electronic energy + Delta-G solvation = -27535.373286 eV Core-core repulsion = 23681.685008 eV Total energy + Delta-G solvation = -3853.688277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 5.61 seconds Orbital eigenvalues (eV) -40.60710 -39.47031 -37.71388 -36.38597 -35.79155 -33.60457 -31.90986 -30.43724 -30.03949 -27.62917 -27.27654 -25.91397 -24.89936 -23.85789 -22.73954 -21.65122 -20.85276 -19.72756 -18.68013 -18.33174 -17.16104 -16.71116 -16.39941 -15.94406 -15.55099 -15.27614 -14.95532 -14.73263 -14.47649 -14.08026 -13.97350 -13.68126 -13.59727 -13.39857 -13.15790 -12.63298 -12.59997 -12.25529 -12.08458 -11.84766 -11.66325 -11.60984 -11.47788 -11.36050 -11.11177 -10.94012 -10.86617 -10.61100 -10.12613 -10.03115 -9.99285 -9.81550 -9.76719 -9.55807 -9.12008 -9.03454 -8.81134 -8.44755 -6.90375 -5.74615 -3.09590 0.39991 1.04683 1.45840 1.96800 3.39582 3.43005 3.47272 3.49310 3.55225 3.74938 4.41067 4.46990 4.50239 4.63564 4.64889 4.98900 5.05976 5.15105 5.15240 5.21188 5.35262 5.38719 5.40167 5.52457 5.55086 5.57194 5.66125 5.75485 5.77169 5.78427 5.90616 5.95297 6.22173 6.40149 6.49960 6.59111 6.89165 6.95283 7.25025 7.25705 7.38290 7.61535 7.89856 7.92570 7.99278 8.54437 9.03597 9.70336 10.60651 11.41989 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002800 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.202274 B = 9997.390124 C =10484.732311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.020 4.020 3 C -0.148 4.148 4 C 0.031 3.969 5 N -0.441 5.441 6 C 0.017 3.983 7 C 0.589 3.411 8 O -0.522 6.522 9 N -0.694 5.694 10 C 0.118 3.882 11 C -0.098 4.098 12 C 0.082 3.918 13 O -0.572 6.572 14 C 0.119 3.881 15 N -0.600 5.600 16 C -0.220 4.220 17 H 0.084 0.916 18 C -0.005 4.005 19 N -0.913 5.913 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.160 3.840 25 C -0.228 4.228 26 S 0.198 5.802 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.404 0.596 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.370 0.630 40 H 0.048 0.952 41 H 0.037 0.963 42 H 0.254 0.746 43 H 0.027 0.973 44 H 0.080 0.920 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 24.924 -5.515 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.041 4.041 3 C -0.206 4.206 4 C -0.249 4.249 5 N -0.156 5.156 6 C -0.118 4.118 7 C 0.372 3.628 8 O -0.398 6.398 9 N -0.344 5.344 10 C 0.032 3.968 11 C -0.136 4.136 12 C 0.005 3.995 13 O -0.376 6.376 14 C -0.009 4.009 15 N -0.325 5.325 16 C -0.347 4.347 17 H 0.101 0.899 18 C -0.202 4.202 19 N -0.559 5.559 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.034 3.966 25 C -0.370 4.370 26 S 0.455 5.545 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.239 0.761 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.087 24.362 -4.271 26.022 hybrid contribution 0.828 -1.291 -0.823 1.740 sum -7.259 23.071 -5.093 24.716 Atomic orbital electron populations 1.21942 0.93092 1.02944 1.02708 1.19828 0.96130 0.95365 0.92826 1.21939 1.01910 0.94054 1.02720 1.27166 1.00813 0.97250 0.99686 1.66942 1.12312 1.10140 1.26253 1.20650 1.03890 1.00122 0.87108 1.17049 0.79290 0.81283 0.85220 1.90821 1.58160 1.66716 1.24137 1.45829 1.46260 1.33493 1.08860 1.22687 0.90075 0.84997 0.99070 1.21330 0.93324 0.99951 0.98975 1.22179 0.85481 0.97612 0.94267 1.86526 1.33189 1.67063 1.50872 1.22679 0.98662 0.87044 0.92481 1.45265 1.50655 1.07949 1.28680 1.18908 1.21163 0.84975 1.09686 0.89854 1.24835 0.99521 0.98354 0.97512 1.69859 1.37372 1.33250 1.15462 0.86016 0.78252 0.83875 0.77403 1.20404 1.21575 1.21729 1.22399 0.91911 0.84142 0.98178 1.26625 1.03882 1.00306 1.06151 1.82674 1.45659 1.25962 1.00194 0.92203 0.91071 0.91794 0.87871 0.91902 0.91073 0.92212 0.76105 0.89479 0.88833 0.93736 0.94800 0.78417 0.93387 0.94579 0.93539 0.95499 0.90166 0.79321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.09 37.16 0.34 -0.49 16 2 C -0.02 -0.14 3.34 -91.77 -0.31 -0.44 16 3 C -0.15 -0.78 9.09 37.16 0.34 -0.44 16 4 C 0.03 0.31 6.00 -13.61 -0.08 0.22 16 5 N -0.44 -5.72 10.13 -8.51 -0.09 -5.81 16 6 C 0.02 0.25 6.70 -84.52 -0.57 -0.32 16 7 C 0.59 10.55 7.52 -12.59 -0.09 10.45 16 8 O -0.52 -11.03 14.71 5.25 0.08 -10.95 16 9 N -0.69 -11.98 5.23 -48.54 -0.25 -12.23 16 10 C 0.12 2.39 0.77 -131.71 -0.10 2.29 16 11 C -0.10 -2.01 4.88 -26.73 -0.13 -2.14 16 12 C 0.08 1.38 6.88 37.16 0.26 1.63 16 13 O -0.57 -9.39 13.66 -35.23 -0.48 -9.87 16 14 C 0.12 2.44 7.81 -8.50 -0.07 2.38 16 15 N -0.60 -15.67 3.56 -184.74 -0.66 -16.33 16 16 C -0.22 -6.25 10.75 -15.06 -0.16 -6.41 16 17 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 18 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.91 -27.95 11.51 55.49 0.64 -27.31 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.16 4.04 6.78 -8.50 -0.06 3.99 16 25 C -0.23 -2.79 10.62 29.65 0.31 -2.48 16 26 S 0.20 1.71 22.22 -107.50 -2.39 -0.68 16 27 H 0.06 0.30 7.91 -51.93 -0.41 -0.12 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.28 7.91 -51.93 -0.41 -0.13 16 34 H 0.40 6.12 8.21 -40.82 -0.34 5.78 16 35 H 0.09 1.93 5.99 -51.93 -0.31 1.62 16 36 H 0.09 2.22 7.93 -51.93 -0.41 1.81 16 37 H 0.04 0.70 6.65 -51.93 -0.35 0.36 16 38 H 0.03 0.53 8.12 -51.92 -0.42 0.11 16 39 H 0.37 3.97 9.12 45.56 0.42 4.39 16 40 H 0.05 0.93 6.71 -51.93 -0.35 0.58 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 2.32 7.10 -51.93 -0.37 1.95 16 45 H 0.19 2.20 8.03 -52.49 -0.42 1.77 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -35.23 384.42 -8.68 -43.91 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.88 Total: 7.94 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.42 Total: 8.01 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.36 Total: -61.67 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.40 Total: -20.82 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.39 Total: -0.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.23 -8.68 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734073972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.717 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.61 seconds