Wall clock time and date at job start Tue Mar 31 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47649 * 120.00322 * 2 1 3 5 5 N 1.34664 * 125.79840 * 300.13771 * 4 2 1 6 6 H 0.96992 * 124.85600 * 0.05428 * 5 4 2 7 7 C 1.36448 * 110.29566 * 180.29276 * 5 4 2 8 8 C 1.34493 * 108.85812 * 359.74434 * 7 5 4 9 9 C 1.36768 * 125.80410 * 119.99625 * 4 2 1 10 10 C 1.47263 * 126.93909 * 359.97438 * 9 4 2 11 11 O 1.21623 * 120.00126 * 359.70796 * 10 9 4 12 12 N 1.34777 * 119.99630 * 179.70482 * 10 9 4 13 13 C 1.46499 * 119.99665 * 179.72408 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00065 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99650 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00075 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.46908 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99819 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99752 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99846 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00284 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47385 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46850 * 120.00212 * 24 22 20 27 27 H 1.48500 * 109.47389 * 240.00071 * 24 22 20 28 28 H 1.09009 * 109.46729 * 299.99655 * 1 2 3 29 29 H 1.08997 * 109.47336 * 59.99591 * 1 2 3 30 30 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47034 * 240.00891 * 2 1 3 32 32 H 1.08997 * 109.47364 * 300.00392 * 3 2 1 33 33 H 1.09009 * 109.47052 * 60.00543 * 3 2 1 34 34 H 1.09003 * 109.47486 * 179.97438 * 3 2 1 35 35 H 1.08002 * 125.57355 * 179.72678 * 7 5 4 36 36 H 1.07994 * 126.83369 * 180.02562 * 8 7 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 39 39 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 40 40 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 41 41 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 42 42 H 0.97000 * 120.00386 * 359.97438 * 15 14 13 43 43 H 1.08994 * 109.46850 * 299.99690 * 18 16 15 44 44 H 1.08998 * 109.47115 * 59.99614 * 18 16 15 45 45 H 0.97003 * 120.00379 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7781 -0.3552 2.5041 6 1 1.2371 0.4046 2.7702 7 6 2.3944 -1.2139 3.3670 8 6 3.0551 -2.1449 2.6561 9 6 2.8220 -1.8271 1.2431 10 6 3.3388 -2.5590 0.0744 11 8 3.0650 -2.1820 -1.0491 12 7 4.1153 -3.6466 0.2497 13 6 4.6244 -4.3782 -0.9129 14 6 5.4661 -5.5652 -0.4400 15 7 5.9748 -6.2972 -1.6026 16 6 6.7461 -7.3884 -1.4273 17 8 7.0187 -7.7646 -0.3070 18 6 7.2698 -8.1410 -2.6232 19 16 8.2654 -9.5453 -2.0637 20 6 8.7365 -10.2255 -3.6194 21 1 8.4021 -9.7610 -4.5354 22 6 9.5363 -11.3588 -3.6677 23 7 9.9433 -11.9251 -2.5515 24 14 10.0351 -12.0803 -5.3170 25 1 9.4520 -11.2633 -6.4115 26 1 11.5157 -12.0761 -5.4316 27 1 9.5346 -13.4747 -5.4190 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8901 34 1 3.1300 1.4426 0.0005 35 1 2.3580 -1.1553 4.4449 36 1 3.6404 -2.9637 3.0475 37 1 4.3335 -3.9474 1.1457 38 1 3.7871 -4.7412 -1.5090 39 1 5.2409 -3.7141 -1.5187 40 1 6.3034 -5.2022 0.1561 41 1 4.8497 -6.2294 0.1658 42 1 5.7558 -5.9969 -2.4986 43 1 6.4325 -8.5035 -3.2195 44 1 7.8866 -7.4771 -3.2288 45 1 10.5020 -12.7174 -2.5852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740481365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:35 Heat of formation + Delta-G solvation = -46.814353 kcal Electronic energy + Delta-G solvation = -25289.377201 eV Core-core repulsion = 21433.190263 eV Total energy + Delta-G solvation = -3856.186937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.75721 -39.52295 -38.98252 -35.99295 -35.46734 -33.83578 -32.42035 -31.60321 -30.10994 -28.97698 -27.88546 -27.62356 -25.48032 -23.90270 -22.44952 -22.08765 -20.80028 -20.40077 -19.82977 -17.96706 -17.83919 -16.54475 -16.40362 -16.05179 -15.73462 -15.46713 -15.22416 -14.96097 -14.79351 -14.66223 -14.59662 -13.95509 -13.81389 -13.70875 -13.57095 -13.33135 -13.15180 -12.93669 -12.68133 -12.55394 -12.32054 -11.94145 -11.63505 -11.61181 -11.58018 -11.29978 -11.05932 -11.01001 -10.74978 -10.00599 -9.79842 -9.44932 -9.39803 -9.16068 -9.07156 -8.94458 -8.58473 -8.22738 -6.49239 -6.20949 -3.91432 1.42109 2.04764 2.58201 2.89588 3.07528 3.21562 3.22753 3.31096 3.32031 3.41575 3.84514 4.19284 4.21237 4.44242 4.49731 4.60302 4.70643 4.86092 4.91544 5.00262 5.01990 5.09214 5.14495 5.16133 5.27330 5.32951 5.34670 5.43979 5.57097 5.61754 5.67146 5.71642 5.78138 5.81194 5.90609 5.95581 6.15220 6.21302 6.36006 6.54552 6.55229 7.00927 7.34833 7.60991 7.65973 8.11354 8.36517 8.57738 9.24697 10.86556 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.001510 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.870579 B =18539.231838 C =19216.419573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.054 4.054 3 C -0.144 4.144 4 C 0.121 3.879 5 N -0.550 5.550 6 H 0.415 0.585 7 C -0.016 4.016 8 C -0.167 4.167 9 C -0.237 4.237 10 C 0.595 3.405 11 O -0.550 6.550 12 N -0.723 5.723 13 C 0.111 3.889 14 C 0.111 3.889 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.517 6.517 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.074 0.926 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.127 0.873 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.170 0.830 36 H 0.146 0.854 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.401 0.599 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.578 27.768 9.689 35.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.202 4.202 4 C 0.002 3.998 5 N -0.145 5.145 6 H 0.251 0.749 7 C -0.143 4.143 8 C -0.191 4.191 9 C -0.247 4.247 10 C 0.384 3.616 11 O -0.430 6.430 12 N -0.374 5.374 13 C -0.013 4.013 14 C -0.014 4.014 15 N -0.392 5.392 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.092 0.908 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.187 0.813 36 H 0.164 0.836 37 H 0.238 0.762 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.261 27.330 10.925 35.175 hybrid contribution -0.181 0.228 -1.942 1.964 sum -19.442 27.559 8.982 34.902 Atomic orbital electron populations 1.21834 0.94204 1.02357 1.01775 1.20274 0.95779 0.95927 0.95273 1.21835 1.01745 0.94811 1.01778 1.20277 0.98300 0.95656 0.85545 1.41554 1.41657 1.25839 1.05418 0.74877 1.21743 1.02221 0.94470 0.95891 1.22058 1.04428 1.01348 0.91305 1.20053 1.10413 1.01270 0.93004 1.17305 0.77185 0.79274 0.87805 1.90695 1.59532 1.67636 1.25114 1.45544 1.52613 1.29402 1.09886 1.21417 0.98186 0.93003 0.88682 1.21326 0.97947 0.92630 0.89509 1.45806 1.54199 1.29991 1.09188 1.20316 0.77198 0.79424 0.91050 1.90706 1.56608 1.66237 1.25498 1.23529 1.04413 1.03618 0.98830 1.85393 1.61063 1.25329 1.11632 1.22917 1.37219 1.15517 0.92671 0.90818 1.24990 0.95147 0.95803 0.97648 1.70025 1.33588 1.20325 1.26370 0.86113 0.78345 0.78832 0.82178 1.19602 1.20576 1.20573 0.93407 0.91603 0.92126 0.85531 0.91601 0.93404 0.92129 0.81300 0.83583 0.76209 0.90720 0.90709 0.90953 0.90966 0.76492 0.89066 0.89064 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.18 37.16 0.34 -0.49 16 2 C -0.05 -0.40 3.24 -91.77 -0.30 -0.69 16 3 C -0.14 -0.83 9.18 37.16 0.34 -0.49 16 4 C 0.12 0.97 5.68 -81.88 -0.47 0.50 16 5 N -0.55 -2.92 5.90 -9.10 -0.05 -2.98 16 6 H 0.41 1.05 8.96 -40.82 -0.37 0.68 16 7 C -0.02 -0.09 11.89 -16.82 -0.20 -0.29 16 8 C -0.17 -1.21 10.56 -37.49 -0.40 -1.60 16 9 C -0.24 -2.26 6.29 -103.35 -0.65 -2.91 16 10 C 0.59 6.69 7.81 -12.59 -0.10 6.59 16 11 O -0.55 -7.63 14.47 5.26 0.08 -7.56 16 12 N -0.72 -6.69 5.55 -61.43 -0.34 -7.03 16 13 C 0.11 1.06 5.79 -4.04 -0.02 1.04 16 14 C 0.11 1.22 5.79 -4.04 -0.02 1.19 16 15 N -0.74 -9.55 5.56 -60.29 -0.33 -9.89 16 16 C 0.53 9.82 7.85 -10.98 -0.09 9.73 16 17 O -0.52 -11.56 15.86 5.55 0.09 -11.48 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.44 -0.10 2.00 16 23 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 24 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.05 0.20 8.14 -51.92 -0.42 -0.22 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.13 1.28 5.50 -51.93 -0.29 1.00 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.20 8.14 -51.92 -0.42 -0.22 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.17 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.15 0.79 7.69 -52.49 -0.40 0.39 16 37 H 0.40 2.93 7.60 -40.82 -0.31 2.62 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.40 4.06 8.47 -40.82 -0.35 3.72 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -37.45 396.51 -8.98 -46.43 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.75 Total: 2.62 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.14 Total: -3.23 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.00 Total: -45.34 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.16 Total: -19.03 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.45 -8.98 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.382 kcal (2) G-P(sol) polarization free energy of solvation -37.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds