Wall clock time and date at job start Tue Mar 31 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50696 * 109.47649 * 120.00322 * 2 1 3 5 5 N 1.34664 * 125.79840 * 300.13771 * 4 2 1 6 6 H 0.96992 * 124.85600 * 0.05428 * 5 4 2 7 7 C 1.36448 * 110.29566 * 180.29276 * 5 4 2 8 8 C 1.34493 * 108.85812 * 359.74434 * 7 5 4 9 9 C 1.36768 * 125.80410 * 119.99625 * 4 2 1 10 10 C 1.47263 * 126.93909 * 359.97438 * 9 4 2 11 11 O 1.21623 * 120.00126 * 359.70796 * 10 9 4 12 12 N 1.34777 * 119.99630 * 179.70482 * 10 9 4 13 13 C 1.46499 * 119.99665 * 179.72408 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00065 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99650 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00075 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.46908 * 179.97438 * 18 16 15 20 20 C 1.76202 * 99.99819 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99752 * 359.97438 * 20 19 18 22 22 C 1.38793 * 119.99846 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00284 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99825 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47385 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46850 * 120.00212 * 24 22 20 27 27 H 1.48500 * 109.47389 * 240.00071 * 24 22 20 28 28 H 1.09009 * 109.46729 * 299.99655 * 1 2 3 29 29 H 1.08997 * 109.47336 * 59.99591 * 1 2 3 30 30 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47034 * 240.00891 * 2 1 3 32 32 H 1.08997 * 109.47364 * 300.00392 * 3 2 1 33 33 H 1.09009 * 109.47052 * 60.00543 * 3 2 1 34 34 H 1.09003 * 109.47486 * 179.97438 * 3 2 1 35 35 H 1.08002 * 125.57355 * 179.72678 * 7 5 4 36 36 H 1.07994 * 126.83369 * 180.02562 * 8 7 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 39 39 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 40 40 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 41 41 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 42 42 H 0.97000 * 120.00386 * 359.97438 * 15 14 13 43 43 H 1.08994 * 109.46850 * 299.99690 * 18 16 15 44 44 H 1.08998 * 109.47115 * 59.99614 * 18 16 15 45 45 H 0.97003 * 120.00379 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7781 -0.3552 2.5041 6 1 1.2371 0.4046 2.7702 7 6 2.3944 -1.2139 3.3670 8 6 3.0551 -2.1449 2.6561 9 6 2.8220 -1.8271 1.2431 10 6 3.3388 -2.5590 0.0744 11 8 3.0650 -2.1820 -1.0491 12 7 4.1153 -3.6466 0.2497 13 6 4.6244 -4.3782 -0.9129 14 6 5.4661 -5.5652 -0.4400 15 7 5.9748 -6.2972 -1.6026 16 6 6.7461 -7.3884 -1.4273 17 8 7.0187 -7.7646 -0.3070 18 6 7.2698 -8.1410 -2.6232 19 16 8.2654 -9.5453 -2.0637 20 6 8.7365 -10.2255 -3.6194 21 1 8.4021 -9.7610 -4.5354 22 6 9.5363 -11.3588 -3.6677 23 7 9.9433 -11.9251 -2.5515 24 14 10.0351 -12.0803 -5.3170 25 1 9.4520 -11.2633 -6.4115 26 1 11.5157 -12.0761 -5.4316 27 1 9.5346 -13.4747 -5.4190 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9564 0.8901 34 1 3.1300 1.4426 0.0005 35 1 2.3580 -1.1553 4.4449 36 1 3.6404 -2.9637 3.0475 37 1 4.3335 -3.9474 1.1457 38 1 3.7871 -4.7412 -1.5090 39 1 5.2409 -3.7141 -1.5187 40 1 6.3034 -5.2022 0.1561 41 1 4.8497 -6.2294 0.1658 42 1 5.7558 -5.9969 -2.4986 43 1 6.4325 -8.5035 -3.2195 44 1 7.8866 -7.4771 -3.2288 45 1 10.5020 -12.7174 -2.5852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001740481365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:17 Heat of formation + Delta-G solvation = -74.836666 kcal Electronic energy + Delta-G solvation = -25290.592339 eV Core-core repulsion = 21433.190263 eV Total energy + Delta-G solvation = -3857.402076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 18.55 seconds Orbital eigenvalues (eV) -42.28732 -40.71248 -40.04653 -36.95178 -36.09946 -34.92634 -34.57386 -32.30999 -31.36935 -29.56589 -28.98001 -28.07597 -27.63613 -24.74753 -23.20813 -22.66277 -21.86051 -21.21183 -20.61697 -19.83423 -18.47807 -17.92217 -17.34413 -17.05666 -16.87310 -16.66156 -16.64261 -16.25142 -15.71528 -15.50800 -15.47308 -15.08063 -14.76287 -14.72037 -14.56447 -14.35993 -14.01609 -13.78458 -13.65407 -13.46319 -13.14918 -13.08176 -12.92326 -12.85916 -12.80539 -12.57966 -12.14098 -12.09903 -11.84988 -11.70546 -11.14941 -11.06225 -10.78020 -10.26491 -10.24583 -10.13776 -9.71808 -9.11552 -8.65342 -8.33991 -6.11687 0.75003 1.25962 1.42250 1.46045 1.57200 1.57764 1.59617 1.91688 2.27847 2.34812 2.57142 2.73470 3.00394 3.33593 3.62038 3.69625 3.96227 4.01314 4.02685 4.07974 4.20592 4.32399 4.32640 4.41414 4.50215 4.53645 4.55229 4.69505 4.81970 4.83526 4.88798 4.89120 4.98364 5.10834 5.17195 5.28737 5.31348 5.39890 5.43566 5.51436 5.81763 6.01589 6.21182 6.44601 6.57320 6.69096 7.07745 7.20427 7.31753 8.75472 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.001510 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.870579 B =18539.231838 C =19216.419573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C -0.139 4.139 4 C 0.114 3.886 5 N -0.537 5.537 6 H 0.430 0.570 7 C -0.003 4.003 8 C -0.186 4.186 9 C -0.272 4.272 10 C 0.588 3.412 11 O -0.585 6.585 12 N -0.716 5.716 13 C 0.123 3.877 14 C 0.117 3.883 15 N -0.711 5.711 16 C 0.537 3.463 17 O -0.562 6.562 18 C -0.131 4.131 19 S -0.150 6.150 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.205 0.795 36 H 0.159 0.841 37 H 0.413 0.587 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.418 0.582 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.846 29.554 9.494 37.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.197 4.197 4 C -0.006 4.006 5 N -0.133 5.133 6 H 0.269 0.731 7 C -0.131 4.131 8 C -0.210 4.210 9 C -0.282 4.282 10 C 0.379 3.621 11 O -0.468 6.468 12 N -0.368 5.368 13 C -0.002 4.002 14 C -0.008 4.008 15 N -0.366 5.366 16 C 0.323 3.677 17 O -0.440 6.440 18 C -0.282 4.282 19 S 0.077 5.923 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.221 0.779 36 H 0.176 0.824 37 H 0.249 0.751 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.256 0.744 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.564 29.167 10.735 37.267 hybrid contribution 0.122 -0.197 -1.819 1.834 sum -20.442 28.970 8.916 36.560 Atomic orbital electron populations 1.21799 0.92933 1.01799 1.03157 1.20187 0.96788 0.96420 0.93951 1.21800 1.00757 0.93969 1.03156 1.20350 0.98088 0.95441 0.86680 1.41557 1.41192 1.26095 1.04426 0.73076 1.22296 1.00370 0.93141 0.97262 1.22303 1.05642 1.02696 0.90352 1.20174 1.12073 1.02427 0.93513 1.17687 0.76989 0.79441 0.88013 1.90674 1.60952 1.68664 1.26496 1.45470 1.52078 1.28912 1.10319 1.21251 0.97856 0.92293 0.88767 1.21358 0.98027 0.92754 0.88611 1.45516 1.52068 1.28101 1.10955 1.20017 0.77654 0.80342 0.89688 1.90697 1.58709 1.67831 1.26797 1.23377 1.04053 1.01012 0.99754 1.85549 1.63405 1.29651 1.13685 1.23253 1.37406 1.15956 0.92819 0.89885 1.26111 0.94909 0.96151 1.01932 1.70183 1.34468 1.20979 1.29124 0.84908 0.78043 0.78006 0.76998 1.18092 1.19948 1.19937 0.91304 0.90939 0.93614 0.88729 0.90936 0.91308 0.93607 0.77857 0.82391 0.75052 0.90681 0.90661 0.90964 0.90984 0.74448 0.87042 0.87044 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 2 C -0.05 -0.79 3.24 -11.54 -0.04 -0.83 16 3 C -0.14 -1.48 9.18 71.98 0.66 -0.82 16 4 C 0.11 1.75 5.68 41.78 0.24 1.99 16 5 N -0.54 -4.50 5.90 -182.72 -1.08 -5.58 16 6 H 0.43 0.88 8.96 -92.71 -0.83 0.05 16 7 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 8 C -0.19 -2.43 10.56 23.62 0.25 -2.18 16 9 C -0.27 -5.12 6.29 -19.04 -0.12 -5.24 16 10 C 0.59 13.49 7.81 86.62 0.68 14.17 16 11 O -0.59 -16.91 14.47 -4.10 -0.06 -16.97 16 12 N -0.72 -13.07 5.55 -466.51 -2.59 -15.66 16 13 C 0.12 2.24 5.79 86.38 0.50 2.74 16 14 C 0.12 2.44 5.79 86.38 0.50 2.94 16 15 N -0.71 -17.37 5.56 -463.05 -2.57 -19.94 16 16 C 0.54 19.40 7.85 87.66 0.69 20.08 16 17 O -0.56 -25.48 15.86 -3.04 -0.05 -25.53 16 18 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 19 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 20 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -55.97 13.22 21.65 0.29 -55.69 16 24 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 2.05 5.50 -2.39 -0.01 2.03 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.20 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.16 1.50 7.69 -2.91 -0.02 1.48 16 37 H 0.41 5.79 7.60 -92.71 -0.70 5.09 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.42 7.51 8.47 -92.71 -0.79 6.73 16 43 H 0.11 3.91 8.14 -2.40 -0.02 3.90 16 44 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 45 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -84.37 396.51 0.07 -84.30 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -1.29 Total: 19.82 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 6.55 Total: -1.04 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -5.95 Total: -96.87 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.11 Total: -42.50 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -84.37 0.07 -84.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.467 kcal (2) G-P(sol) polarization free energy of solvation -84.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.55 seconds