Wall clock time and date at job start Wed Apr 1 2020 01:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47469 * 2 1 4 4 H 1.09003 * 109.46966 * 305.62230 * 3 2 1 5 5 O 1.42900 * 109.47251 * 65.62442 * 3 2 1 6 6 C 1.42899 * 113.99987 * 252.59568 * 5 3 2 7 7 C 1.50701 * 109.47263 * 185.62809 * 3 2 1 8 8 O 1.21279 * 119.99804 * 248.65314 * 7 3 2 9 9 N 1.34777 * 120.00048 * 68.64941 * 7 3 2 10 10 C 1.47068 * 120.80476 * 184.14133 * 9 7 3 11 11 C 1.53831 * 108.30954 * 115.24335 * 10 9 7 12 12 C 1.50980 * 108.93489 * 45.24147 * 11 10 9 13 13 S 1.75958 * 126.03110 * 162.36695 * 12 11 10 14 14 C 1.70896 * 90.31016 * 179.65358 * 13 12 11 15 15 C 1.50705 * 124.92882 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46645 * 269.99903 * 15 14 13 17 17 C 1.36942 * 119.99729 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00033 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00326 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47509 * 60.00184 * 21 19 17 23 23 H 1.48500 * 109.47159 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47393 * 299.99843 * 21 19 17 25 25 N 1.28681 * 110.14848 * 0.05408 * 14 13 12 26 26 C 1.32437 * 117.82111 * 0.06657 * 25 14 13 27 27 C 1.47032 * 120.80343 * 4.42589 * 9 7 3 28 28 H 1.09002 * 109.47270 * 179.05055 * 1 2 3 29 29 H 1.09000 * 109.47103 * 299.05000 * 1 2 3 30 30 H 1.09001 * 109.47255 * 59.05253 * 1 2 3 31 31 H 1.09002 * 109.46826 * 239.99854 * 2 1 3 32 32 H 1.09003 * 109.47162 * 120.00602 * 2 1 3 33 33 H 1.08999 * 109.46419 * 184.67721 * 6 5 3 34 34 H 1.08997 * 109.47072 * 304.67153 * 6 5 3 35 35 H 1.09005 * 109.47084 * 64.67869 * 6 5 3 36 36 H 1.08999 * 109.61953 * 234.98494 * 10 9 7 37 37 H 1.08999 * 109.61156 * 355.51222 * 10 9 7 38 38 H 1.08995 * 109.68590 * 285.33706 * 11 10 9 39 39 H 1.09002 * 109.54090 * 165.06110 * 11 10 9 40 40 H 1.08993 * 109.47191 * 29.99431 * 15 14 13 41 41 H 1.08991 * 109.47542 * 150.00002 * 15 14 13 42 42 H 0.96996 * 120.00525 * 0.02562 * 16 15 14 43 43 H 0.96993 * 120.00117 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.81562 * 344.75434 * 27 9 7 45 45 H 1.09002 * 109.81823 * 105.59517 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8354 5 8 1.6746 2.0769 1.2272 6 6 0.6297 3.0424 1.0936 7 6 3.5406 1.4447 -0.1393 8 8 4.2354 1.7957 0.7906 9 7 4.1104 1.0565 -1.2974 10 6 5.5728 0.9652 -1.4237 11 6 5.9467 -0.5087 -1.6563 12 6 5.0156 -1.0930 -2.6913 13 16 5.2853 -2.5687 -3.6107 14 6 3.7881 -2.3572 -4.4072 15 6 3.2272 -3.2877 -5.4515 16 7 3.6749 -2.8587 -6.7788 17 6 3.2882 -3.5580 -7.8909 18 1 2.6530 -4.4255 -7.7895 19 6 3.7119 -3.1512 -9.1487 20 7 4.4857 -2.0937 -9.2723 21 14 3.1839 -4.1047 -10.6657 22 1 1.7022 -4.0949 -10.7658 23 1 3.7664 -3.4714 -11.8760 24 1 3.6637 -5.5061 -10.5615 25 7 3.2094 -1.2876 -3.9863 26 6 3.8318 -0.5705 -3.0631 27 6 3.2853 0.7200 -2.4669 28 1 -0.3634 -1.0275 -0.0170 29 1 -0.3633 0.4990 0.8984 30 1 -0.3634 0.5285 -0.8814 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4679 3.5373 2.0512 34 1 0.9125 3.7827 0.3453 35 1 -0.2883 2.5436 0.7827 36 1 5.9054 1.5676 -2.2690 37 1 6.0423 1.3244 -0.5080 38 1 5.8495 -1.0638 -0.7233 39 1 6.9747 -0.5721 -2.0131 40 1 3.5776 -4.3020 -5.2602 41 1 2.1383 -3.2657 -5.4106 42 1 4.2457 -2.0798 -6.8699 43 1 4.7820 -1.8096 -10.1511 44 1 2.2497 0.5752 -2.1592 45 1 3.3431 1.5218 -3.2030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001750932958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:22 Heat of formation + Delta-G solvation = -15.089734 kcal Electronic energy + Delta-G solvation = -27317.467046 eV Core-core repulsion = 23462.655792 eV Total energy + Delta-G solvation = -3854.811255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.93321 -39.55879 -38.05445 -36.48203 -34.72217 -34.00182 -32.38322 -31.60005 -29.85005 -28.69785 -26.86402 -26.59756 -25.54422 -23.70867 -23.15658 -22.26281 -21.76387 -19.96453 -18.36243 -18.28683 -17.45007 -17.21291 -16.92899 -16.16970 -15.81365 -15.71379 -15.00307 -14.86653 -14.62674 -14.39912 -14.26940 -13.74660 -13.73324 -13.59923 -13.35806 -13.01841 -12.92162 -12.71401 -12.61494 -12.29890 -12.27827 -11.90740 -11.81708 -11.72737 -11.50537 -11.17552 -11.05358 -10.99418 -10.85141 -10.41672 -10.21646 -9.86383 -9.62434 -9.37323 -9.13206 -8.97052 -8.94895 -8.48478 -7.06830 -5.84245 -3.15937 0.84139 1.49134 1.95133 2.26476 2.43355 2.85348 3.40421 3.44544 3.45622 3.46090 3.99052 4.15374 4.44777 4.48864 4.53711 4.61356 4.68540 4.87173 4.94182 4.96558 4.99468 5.02481 5.13413 5.15623 5.21150 5.29200 5.32755 5.39749 5.48379 5.51085 5.64235 5.66328 5.73268 5.75952 5.93231 5.95163 6.05200 6.13271 6.37217 6.42436 6.66882 7.03496 7.60656 7.84950 7.95591 8.31383 9.43796 9.94499 10.30833 11.37955 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.002618 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.537673 B =10691.788515 C =11471.641679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.141 4.141 3 C 0.073 3.927 4 H 0.090 0.910 5 O -0.356 6.356 6 C 0.025 3.975 7 C 0.517 3.483 8 O -0.519 6.519 9 N -0.611 5.611 10 C 0.116 3.884 11 C -0.053 4.053 12 C -0.235 4.235 13 S 0.139 5.861 14 C 0.076 3.924 15 C 0.224 3.776 16 N -0.723 5.723 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.930 5.930 21 Si 0.912 3.088 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 N -0.463 5.463 26 C 0.045 3.955 27 C 0.184 3.816 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.107 0.893 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 7.247 20.259 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.179 4.179 3 C 0.012 3.988 4 H 0.107 0.893 5 O -0.274 6.274 6 C -0.072 4.072 7 C 0.304 3.696 8 O -0.393 6.393 9 N -0.346 5.346 10 C -0.007 4.007 11 C -0.094 4.094 12 C -0.357 4.357 13 S 0.397 5.603 14 C -0.204 4.204 15 C 0.094 3.906 16 N -0.369 5.369 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.742 3.258 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 N -0.177 5.177 26 C -0.089 4.089 27 C 0.059 3.941 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.125 0.875 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.656 6.616 20.544 21.746 hybrid contribution -0.561 0.552 -1.096 1.350 sum -3.217 7.168 19.448 20.975 Atomic orbital electron populations 1.21789 0.94350 1.02707 1.02045 1.22023 0.97509 0.94187 1.04133 1.22071 0.91642 0.95969 0.89159 0.89265 1.88022 1.55142 1.55853 1.28358 1.23002 0.89952 0.91274 1.02924 1.20670 0.90484 0.76813 0.81651 1.90701 1.64183 1.46181 1.38249 1.48053 1.07357 1.67519 1.11700 1.21781 0.79596 0.95476 1.03874 1.20559 0.97430 0.95370 0.95998 1.25844 1.01291 1.01822 1.06773 1.83985 1.22636 1.21440 1.32224 1.27305 0.94734 0.96924 1.01395 1.19338 0.97507 0.91498 0.82275 1.42255 1.60622 1.34984 0.99027 1.19151 1.25824 1.07889 0.84810 0.90795 1.24776 1.00057 0.98092 0.97608 1.69662 1.38740 1.26227 1.23114 0.86206 0.78111 0.79065 0.82390 1.21090 1.21624 1.21095 1.65777 1.35017 1.05228 1.11710 1.20760 0.92331 0.98636 0.97130 1.20430 0.94783 0.92044 0.86849 0.91787 0.92074 0.92425 0.89689 0.90289 0.89189 0.93783 0.93424 0.90171 0.87812 0.89863 0.89114 0.93974 0.92863 0.77944 0.93278 0.87545 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.25 37.16 0.34 -0.81 16 2 C -0.14 -1.30 5.18 -26.74 -0.14 -1.44 16 3 C 0.07 0.73 1.80 -27.88 -0.05 0.68 16 4 H 0.09 0.69 6.92 -51.93 -0.36 0.34 16 5 O -0.36 -3.95 9.56 -54.99 -0.53 -4.47 16 6 C 0.02 0.18 10.46 101.05 1.06 1.24 16 7 C 0.52 6.34 7.06 -10.98 -0.08 6.26 16 8 O -0.52 -8.14 15.95 -14.20 -0.23 -8.37 16 9 N -0.61 -6.72 2.91 -172.72 -0.50 -7.22 16 10 C 0.12 1.18 6.45 -3.30 -0.02 1.16 16 11 C -0.05 -0.55 6.46 -27.31 -0.18 -0.72 16 12 C -0.24 -3.15 6.43 -35.45 -0.23 -3.38 16 13 S 0.14 2.05 23.17 -107.50 -2.49 -0.44 16 14 C 0.08 1.34 6.75 -13.60 -0.09 1.25 16 15 C 0.22 4.48 6.84 -5.19 -0.04 4.45 16 16 N -0.72 -18.11 5.59 -61.08 -0.34 -18.45 16 17 C -0.25 -6.70 9.99 -15.06 -0.15 -6.85 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 20 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 21 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 N -0.46 -7.98 10.51 -7.28 -0.08 -8.05 16 26 C 0.05 0.64 6.87 -82.82 -0.57 0.08 16 27 C 0.18 2.03 5.90 -4.11 -0.02 2.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.45 6.69 -51.93 -0.35 0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.83 5.84 -51.93 -0.30 0.53 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.28 8.06 -51.93 -0.42 -0.14 16 35 H 0.05 0.27 6.63 -51.93 -0.34 -0.07 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.06 7.01 -51.93 -0.36 0.69 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.39 10.42 7.66 -40.82 -0.31 10.11 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.11 1.02 4.45 -51.93 -0.23 0.79 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -33.54 377.37 -9.49 -43.02 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.45 Total: 4.88 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -0.26 Total: 3.56 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.20 Total: -60.75 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.75 Total: -12.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.54 -9.49 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750932958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.934 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds