Wall clock time and date at job start Wed Apr 1 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47469 * 2 1 4 4 H 1.09003 * 109.46966 * 305.62230 * 3 2 1 5 5 O 1.42900 * 109.47251 * 65.62442 * 3 2 1 6 6 C 1.42899 * 113.99987 * 252.59568 * 5 3 2 7 7 C 1.50701 * 109.47263 * 185.62809 * 3 2 1 8 8 O 1.21279 * 119.99804 * 248.65314 * 7 3 2 9 9 N 1.34777 * 120.00048 * 68.64941 * 7 3 2 10 10 C 1.47068 * 120.80476 * 184.14133 * 9 7 3 11 11 C 1.53831 * 108.30954 * 115.24335 * 10 9 7 12 12 C 1.50980 * 108.93489 * 45.24147 * 11 10 9 13 13 S 1.75958 * 126.03110 * 162.36695 * 12 11 10 14 14 C 1.70896 * 90.31016 * 179.65358 * 13 12 11 15 15 C 1.50705 * 124.92882 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46645 * 269.99903 * 15 14 13 17 17 C 1.36942 * 119.99729 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00033 * 0.02562 * 17 16 15 19 19 C 1.38814 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00326 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47509 * 60.00184 * 21 19 17 23 23 H 1.48500 * 109.47159 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47393 * 299.99843 * 21 19 17 25 25 N 1.28681 * 110.14848 * 0.05408 * 14 13 12 26 26 C 1.32437 * 117.82111 * 0.06657 * 25 14 13 27 27 C 1.47032 * 120.80343 * 4.42589 * 9 7 3 28 28 H 1.09002 * 109.47270 * 179.05055 * 1 2 3 29 29 H 1.09000 * 109.47103 * 299.05000 * 1 2 3 30 30 H 1.09001 * 109.47255 * 59.05253 * 1 2 3 31 31 H 1.09002 * 109.46826 * 239.99854 * 2 1 3 32 32 H 1.09003 * 109.47162 * 120.00602 * 2 1 3 33 33 H 1.08999 * 109.46419 * 184.67721 * 6 5 3 34 34 H 1.08997 * 109.47072 * 304.67153 * 6 5 3 35 35 H 1.09005 * 109.47084 * 64.67869 * 6 5 3 36 36 H 1.08999 * 109.61953 * 234.98494 * 10 9 7 37 37 H 1.08999 * 109.61156 * 355.51222 * 10 9 7 38 38 H 1.08995 * 109.68590 * 285.33706 * 11 10 9 39 39 H 1.09002 * 109.54090 * 165.06110 * 11 10 9 40 40 H 1.08993 * 109.47191 * 29.99431 * 15 14 13 41 41 H 1.08991 * 109.47542 * 150.00002 * 15 14 13 42 42 H 0.96996 * 120.00525 * 0.02562 * 16 15 14 43 43 H 0.96993 * 120.00117 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.81562 * 344.75434 * 27 9 7 45 45 H 1.09002 * 109.81823 * 105.59517 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5968 1.9845 -0.8354 5 8 1.6746 2.0769 1.2272 6 6 0.6297 3.0424 1.0936 7 6 3.5406 1.4447 -0.1393 8 8 4.2354 1.7957 0.7906 9 7 4.1104 1.0565 -1.2974 10 6 5.5728 0.9652 -1.4237 11 6 5.9467 -0.5087 -1.6563 12 6 5.0156 -1.0930 -2.6913 13 16 5.2853 -2.5687 -3.6107 14 6 3.7881 -2.3572 -4.4072 15 6 3.2272 -3.2877 -5.4515 16 7 3.6749 -2.8587 -6.7788 17 6 3.2882 -3.5580 -7.8909 18 1 2.6530 -4.4255 -7.7895 19 6 3.7119 -3.1512 -9.1487 20 7 4.4857 -2.0937 -9.2723 21 14 3.1839 -4.1047 -10.6657 22 1 1.7022 -4.0949 -10.7658 23 1 3.7664 -3.4714 -11.8760 24 1 3.6637 -5.5061 -10.5615 25 7 3.2094 -1.2876 -3.9863 26 6 3.8318 -0.5705 -3.0631 27 6 3.2853 0.7200 -2.4669 28 1 -0.3634 -1.0275 -0.0170 29 1 -0.3633 0.4990 0.8984 30 1 -0.3634 0.5285 -0.8814 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4679 3.5373 2.0512 34 1 0.9125 3.7827 0.3453 35 1 -0.2883 2.5436 0.7827 36 1 5.9054 1.5676 -2.2690 37 1 6.0423 1.3244 -0.5080 38 1 5.8495 -1.0638 -0.7233 39 1 6.9747 -0.5721 -2.0131 40 1 3.5776 -4.3020 -5.2602 41 1 2.1383 -3.2657 -5.4106 42 1 4.2457 -2.0798 -6.8699 43 1 4.7820 -1.8096 -10.1511 44 1 2.2497 0.5752 -2.1592 45 1 3.3431 1.5218 -3.2030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750932958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:21 Heat of formation + Delta-G solvation = -37.162086 kcal Electronic energy + Delta-G solvation = -27318.424175 eV Core-core repulsion = 23462.655792 eV Total energy + Delta-G solvation = -3855.768384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89121 -40.64192 -38.87272 -37.59039 -36.46472 -34.78625 -33.63022 -33.05278 -31.17587 -29.40522 -28.43731 -27.36703 -26.37363 -25.38456 -24.20321 -23.38759 -22.81991 -20.97479 -19.62294 -19.35510 -19.01552 -18.22890 -17.91353 -17.00218 -16.84958 -16.70749 -16.48539 -16.03791 -15.70054 -15.45841 -15.24258 -15.16271 -14.92029 -14.80786 -14.36297 -14.05125 -13.99930 -13.78837 -13.66953 -13.42856 -13.11020 -13.01515 -12.96549 -12.72880 -12.60209 -12.42196 -12.33041 -12.18667 -12.14921 -11.87871 -11.78380 -11.21653 -11.01358 -10.61014 -10.44427 -10.22591 -9.94934 -9.64004 -9.08949 -7.96269 -5.28251 -0.36425 0.31770 0.74921 1.34463 1.49724 1.53182 1.56854 1.58828 1.66392 2.56445 2.70945 2.96588 3.29181 3.38481 3.64270 3.73633 3.75977 3.83023 3.83922 4.08061 4.15527 4.19110 4.25079 4.26030 4.37869 4.43421 4.49788 4.53971 4.57085 4.69515 4.74053 4.78183 4.83267 4.84070 4.86450 5.02609 5.07946 5.13236 5.20098 5.32512 5.48301 5.96261 6.17670 6.21944 6.72772 6.94471 7.29933 7.96103 8.23032 9.26818 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017147 B = 0.002618 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.537673 B =10691.788515 C =11471.641679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.075 3.925 4 H 0.114 0.886 5 O -0.384 6.384 6 C 0.018 3.982 7 C 0.515 3.485 8 O -0.558 6.558 9 N -0.606 5.606 10 C 0.114 3.886 11 C -0.050 4.050 12 C -0.224 4.224 13 S 0.163 5.837 14 C 0.038 3.962 15 C 0.227 3.773 16 N -0.736 5.736 17 C -0.249 4.249 18 H 0.085 0.915 19 C -0.071 4.071 20 N -0.969 5.969 21 Si 0.979 3.021 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.274 1.274 25 N -0.476 5.476 26 C 0.029 3.971 27 C 0.189 3.811 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.122 0.878 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.918 7.303 20.842 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.013 3.987 4 H 0.131 0.869 5 O -0.302 6.302 6 C -0.078 4.078 7 C 0.304 3.696 8 O -0.436 6.436 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.091 4.091 12 C -0.346 4.346 13 S 0.422 5.578 14 C -0.240 4.240 15 C 0.098 3.902 16 N -0.380 5.380 17 C -0.380 4.380 18 H 0.102 0.898 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.807 3.193 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.200 1.200 25 N -0.192 5.192 26 C -0.104 4.104 27 C 0.064 3.936 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.205 0.795 43 H 0.061 0.939 44 H 0.139 0.861 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.287 6.634 21.143 22.402 hybrid contribution -0.349 0.559 -1.127 1.306 sum -3.636 7.193 20.016 21.578 Atomic orbital electron populations 1.21777 0.92943 1.03049 1.02807 1.21957 0.98665 0.93572 1.03090 1.22136 0.90103 0.96586 0.89839 0.86873 1.87991 1.56349 1.56733 1.29088 1.23216 0.89681 0.91035 1.03882 1.21133 0.91421 0.75917 0.81177 1.90679 1.65237 1.48163 1.39502 1.48086 1.07785 1.66742 1.11419 1.21887 0.79215 0.95411 1.04448 1.20696 0.97808 0.95288 0.95289 1.26298 1.01273 1.00759 1.06228 1.83802 1.20511 1.22034 1.31502 1.26842 0.96756 0.97718 1.02672 1.19295 0.97352 0.92647 0.80918 1.42414 1.60516 1.34390 1.00637 1.19606 1.24797 1.07871 0.85716 0.89760 1.25622 1.00789 0.99341 1.00643 1.69826 1.40634 1.28169 1.23259 0.85147 0.77865 0.77949 0.78369 1.20259 1.22320 1.20012 1.65731 1.35985 1.05216 1.12221 1.21162 0.92707 0.99589 0.96960 1.20537 0.95351 0.90871 0.86882 0.91710 0.91702 0.91224 0.90261 0.91747 0.88353 0.92959 0.91803 0.88932 0.87750 0.89209 0.87014 0.92647 0.93182 0.79500 0.93896 0.86071 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.25 71.98 0.67 -1.32 16 2 C -0.13 -2.33 5.18 30.59 0.16 -2.17 16 3 C 0.07 1.37 1.80 29.85 0.05 1.42 16 4 H 0.11 1.48 6.92 -2.39 -0.02 1.46 16 5 O -0.38 -8.03 9.56 -130.09 -1.24 -9.27 16 6 C 0.02 0.22 10.46 113.37 1.19 1.41 16 7 C 0.51 12.04 7.06 87.66 0.62 12.66 16 8 O -0.56 -17.28 15.95 15.87 0.25 -17.02 16 9 N -0.61 -12.31 2.91 -818.74 -2.38 -14.69 16 10 C 0.11 2.09 6.45 86.55 0.56 2.64 16 11 C -0.05 -0.93 6.46 30.22 0.20 -0.73 16 12 C -0.22 -5.61 6.43 24.95 0.16 -5.45 16 13 S 0.16 4.65 23.17 -56.49 -1.31 3.35 16 14 C 0.04 1.34 6.75 88.57 0.60 1.94 16 15 C 0.23 9.07 6.84 85.63 0.59 9.66 16 16 N -0.74 -37.15 5.59 -347.17 -1.94 -39.09 16 17 C -0.25 -13.54 9.99 84.03 0.84 -12.70 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 20 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 21 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 N -0.48 -16.10 10.51 -176.95 -1.86 -17.96 16 26 C 0.03 0.79 6.87 42.15 0.29 1.08 16 27 C 0.19 3.80 5.90 86.05 0.51 4.31 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.82 6.69 -2.39 -0.02 0.81 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 1.45 5.84 -2.39 -0.01 1.44 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.56 8.06 -2.39 -0.02 0.54 16 35 H 0.06 0.58 6.63 -2.38 -0.02 0.57 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.97 7.01 -2.39 -0.02 1.95 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.37 20.51 7.66 -92.71 -0.71 19.80 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.12 2.08 4.45 -2.39 -0.01 2.07 16 45 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -72.45 377.37 1.02 -71.42 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.31 Total: 25.44 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.88 Total: 9.19 kcal Atomic # 7 Polarization: -124.28 SS G_CDS: -5.90 Total: -130.19 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.99 Total: -26.30 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.31 Total: 3.35 kcal Total: -72.45 1.02 -71.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750932958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.259 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds