Wall clock time and date at job start Tue Mar 31 2020 23:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47267 * 119.99824 * 2 1 3 5 5 C 1.52999 * 109.47334 * 65.00193 * 4 2 1 6 6 H 1.09001 * 109.46631 * 305.00623 * 5 4 2 7 7 C 1.52999 * 109.47262 * 185.00147 * 5 4 2 8 8 N 1.46499 * 109.47057 * 184.99797 * 7 5 4 9 9 C 1.36936 * 120.00149 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99904 * 0.02562 * 9 8 7 11 11 C 1.38806 * 120.00068 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00371 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00135 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46937 * 89.99674 * 13 11 9 15 15 H 1.48494 * 109.47176 * 209.99875 * 13 11 9 16 16 H 1.48502 * 109.46724 * 330.00132 * 13 11 9 17 17 N 1.46503 * 109.46876 * 64.99796 * 5 4 2 18 18 C 1.34773 * 120.00132 * 274.99881 * 17 5 4 19 19 O 1.21682 * 119.99801 * 0.02562 * 18 17 5 20 20 C 1.46734 * 119.99561 * 180.02562 * 18 17 5 21 21 C 1.34882 * 125.04888 * 180.02562 * 20 18 17 22 22 C 1.38945 * 113.64687 * 179.73544 * 21 20 18 23 23 C 1.47334 * 122.95887 * 180.28021 * 22 21 20 24 24 N 1.34772 * 119.99693 * 180.24864 * 23 22 21 25 25 O 1.21616 * 120.00096 * 0.25587 * 23 22 21 26 26 C 1.36658 * 114.07834 * 0.48886 * 22 21 20 27 27 S 1.70598 * 110.53057 * 359.52618 * 26 22 21 28 28 H 1.09001 * 109.47334 * 299.99941 * 1 2 3 29 29 H 1.09000 * 109.47471 * 60.00428 * 1 2 3 30 30 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47334 * 240.00059 * 2 1 3 32 32 H 1.09006 * 109.46937 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46699 * 300.00045 * 3 2 1 34 34 H 1.09001 * 109.47069 * 59.99896 * 3 2 1 35 35 H 1.09004 * 109.46665 * 304.99989 * 4 2 1 36 36 H 1.09000 * 109.47374 * 185.00203 * 4 2 1 37 37 H 1.08997 * 109.46884 * 304.99870 * 7 5 4 38 38 H 1.09000 * 109.46996 * 64.99980 * 7 5 4 39 39 H 0.97001 * 119.99683 * 359.97438 * 8 7 5 40 40 H 0.97003 * 120.00817 * 180.02562 * 12 11 9 41 41 H 0.96994 * 119.99328 * 95.00587 * 17 5 4 42 42 H 1.07994 * 123.17755 * 0.02562 * 21 20 18 43 43 H 0.97004 * 120.00486 * 0.02562 * 24 23 22 44 44 H 0.97006 * 119.99726 * 179.97438 * 24 23 22 45 45 H 1.08002 * 124.73732 * 179.79748 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1881 6 1 0.5564 -2.2706 1.0527 7 6 2.0355 -2.8887 2.4919 8 7 1.7570 -4.3232 2.3876 9 6 2.0350 -5.1530 3.4409 10 1 2.4592 -4.7499 4.3486 11 6 1.7717 -6.5123 3.3418 12 7 1.2544 -7.0036 2.2359 13 14 2.1517 -7.6444 4.7784 14 1 0.9650 -7.7319 5.6669 15 1 2.4880 -8.9973 4.2669 16 1 3.3040 -7.1037 5.5433 17 7 2.3148 -2.8420 0.0626 18 6 1.7815 -2.7779 -1.1734 19 8 0.7359 -2.1826 -1.3548 20 6 2.4619 -3.4260 -2.3004 21 6 2.0213 -3.4255 -3.5752 22 6 2.8548 -4.1074 -4.4533 23 6 2.5731 -4.2295 -5.8943 24 7 3.4208 -4.9095 -6.6913 25 8 1.5757 -3.7166 -6.3645 26 6 3.9565 -4.6585 -3.8617 27 16 3.9715 -4.3179 -2.1901 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6053 -0.2616 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 3.0997 -2.7373 2.6721 38 1 1.4634 -2.4667 3.3182 39 1 1.3751 -4.6851 1.5728 40 1 1.0700 -7.9534 2.1667 41 1 3.1485 -3.3163 0.2072 42 1 1.1093 -2.9371 -3.8851 43 1 4.2163 -5.3189 -6.3162 44 1 3.2352 -4.9903 -7.6400 45 1 4.7144 -5.2265 -4.3807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753743664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:18 Heat of formation + Delta-G solvation = -42.882230 kcal Electronic energy + Delta-G solvation = -27392.066082 eV Core-core repulsion = 23536.049654 eV Total energy + Delta-G solvation = -3856.016428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 25.02 seconds Orbital eigenvalues (eV) -40.21794 -39.72881 -37.32618 -36.32593 -34.97746 -33.98327 -33.49979 -31.38847 -30.09413 -28.91106 -26.86854 -25.73522 -25.53977 -23.71116 -22.69019 -20.86893 -20.34827 -19.72238 -19.15434 -18.84227 -17.36462 -17.20652 -16.96437 -16.02482 -15.65692 -15.51470 -15.02259 -14.75512 -14.43607 -14.17414 -13.85581 -13.60501 -13.51690 -13.29284 -13.02180 -12.94928 -12.80136 -12.66840 -12.12935 -12.02626 -11.94680 -11.51073 -11.35156 -11.06209 -10.98331 -10.84722 -10.54338 -10.28544 -10.24723 -10.24552 -10.01672 -9.98416 -9.75283 -9.68641 -9.10923 -8.95346 -8.79493 -8.65362 -6.99914 -5.81095 -3.11359 0.25227 1.24506 1.58850 1.63159 3.07407 3.18368 3.39646 3.41101 3.45372 3.46804 3.47923 4.52643 4.55683 4.77302 4.89919 4.99520 5.04024 5.18298 5.18943 5.50280 5.56347 5.58908 5.64292 5.70721 5.87617 5.88550 5.97679 6.04237 6.06779 6.10656 6.12694 6.18265 6.28992 6.41792 6.48067 6.49466 6.62927 6.68297 6.84665 6.89398 7.03543 7.65019 7.74450 8.00837 8.36201 8.41680 9.48335 10.03650 10.39160 11.40955 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.003940 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.494626 B = 7105.472603 C = 9684.875054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.094 0.906 7 C 0.143 3.857 8 N -0.732 5.732 9 C -0.244 4.244 10 H 0.071 0.929 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.704 5.704 18 C 0.587 3.413 19 O -0.519 6.519 20 C -0.259 4.259 21 C -0.019 4.019 22 C -0.166 4.166 23 C 0.585 3.415 24 N -0.852 5.852 25 O -0.536 6.536 26 C -0.214 4.214 27 S 0.270 5.730 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.035 0.965 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.400 0.600 42 H 0.163 0.837 43 H 0.400 0.600 44 H 0.405 0.595 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.712 8.749 -13.238 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.161 4.161 5 C 0.032 3.968 6 H 0.112 0.888 7 C 0.015 3.985 8 N -0.377 5.377 9 C -0.375 4.375 10 H 0.089 0.911 11 C -0.206 4.206 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.354 5.354 18 C 0.372 3.628 19 O -0.397 6.397 20 C -0.380 4.380 21 C -0.050 4.050 22 C -0.184 4.184 23 C 0.369 3.631 24 N -0.416 5.416 25 O -0.414 6.414 26 C -0.354 4.354 27 S 0.539 5.461 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.234 0.766 42 H 0.180 0.820 43 H 0.228 0.772 44 H 0.236 0.764 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.327 9.159 -12.077 17.797 hybrid contribution -0.025 -1.196 -0.864 1.476 sum 9.302 7.962 -12.941 17.815 Atomic orbital electron populations 1.21836 0.94870 1.03120 0.99756 1.21154 0.96671 0.94891 0.98526 1.21865 1.00290 0.96969 1.01185 1.22030 1.00902 0.94662 0.98527 1.21447 0.98574 0.91111 0.85639 0.88768 1.20979 0.97910 0.86524 0.93057 1.42356 1.76665 1.00897 1.17737 1.19202 1.35125 0.88898 0.94240 0.91140 1.24736 1.01632 0.96921 0.97353 1.69664 1.49345 1.12805 1.25971 0.86211 0.77892 0.80406 0.81767 1.21708 1.21792 1.20758 1.45843 1.27085 1.55450 1.07059 1.16858 0.84534 0.79598 0.81761 1.90828 1.22141 1.42717 1.84001 1.24365 1.03056 1.11793 0.98776 1.20271 0.99610 0.95400 0.89754 1.18983 0.97678 1.06840 0.94912 1.17640 0.82436 0.77507 0.85543 1.43666 1.27714 1.57726 1.12450 1.90854 1.27202 1.47315 1.75982 1.26109 1.02550 1.05390 1.01333 1.83350 1.17392 1.44004 1.01345 0.94232 0.93751 0.90540 0.90725 0.93353 0.93204 0.93101 0.90943 0.91917 0.95791 0.94714 0.77991 0.93463 0.76567 0.81977 0.77166 0.76383 0.80868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.03 37.16 0.30 -1.70 16 2 C -0.09 -1.27 2.38 -90.62 -0.22 -1.49 16 3 C -0.15 -1.68 9.19 37.16 0.34 -1.33 16 4 C -0.12 -1.63 4.36 -26.73 -0.12 -1.75 16 5 C 0.14 2.20 2.33 -67.93 -0.16 2.04 16 6 H 0.09 1.71 5.92 -51.93 -0.31 1.41 16 7 C 0.14 2.68 5.82 -4.04 -0.02 2.66 16 8 N -0.73 -17.57 5.43 -59.91 -0.33 -17.89 16 9 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 10 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 12 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 13 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 N -0.70 -10.95 4.46 -55.10 -0.25 -11.20 16 18 C 0.59 9.49 6.34 -12.83 -0.08 9.41 16 19 O -0.52 -9.42 11.74 5.21 0.06 -9.36 16 20 C -0.26 -3.65 6.37 -37.34 -0.24 -3.89 16 21 C -0.02 -0.27 9.47 -40.51 -0.38 -0.66 16 22 C -0.17 -1.94 5.82 -106.51 -0.62 -2.56 16 23 C 0.58 6.91 8.06 -12.56 -0.10 6.81 16 24 N -0.85 -5.84 8.84 30.41 0.27 -5.57 16 25 O -0.54 -8.61 17.52 5.26 0.09 -8.52 16 26 C -0.21 -1.91 10.41 30.16 0.31 -1.59 16 27 S 0.27 2.88 22.09 -107.50 -2.37 0.50 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 1.27 4.75 -51.93 -0.25 1.03 16 31 H 0.07 1.13 5.19 -51.93 -0.27 0.87 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.94 7.33 -40.82 -0.30 9.64 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.40 5.95 7.68 -40.82 -0.31 5.63 16 42 H 0.16 2.48 7.95 -52.49 -0.42 2.06 16 43 H 0.40 1.51 7.29 -40.82 -0.30 1.22 16 44 H 0.41 2.22 8.93 -40.82 -0.36 1.86 16 45 H 0.17 0.83 6.99 -52.49 -0.37 0.46 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -33.84 379.55 -8.57 -42.41 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -6.23 Total: 14.88 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.23 Total: -1.11 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.42 Total: -61.27 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.15 Total: -17.88 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.37 Total: 0.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.84 -8.57 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753743664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.477 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 25.03 seconds