Wall clock time and date at job start Tue Mar 31 2020 23:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47267 * 119.99824 * 2 1 3 5 5 C 1.52999 * 109.47334 * 65.00193 * 4 2 1 6 6 H 1.09001 * 109.46631 * 305.00623 * 5 4 2 7 7 C 1.52999 * 109.47262 * 185.00147 * 5 4 2 8 8 N 1.46499 * 109.47057 * 184.99797 * 7 5 4 9 9 C 1.36936 * 120.00149 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99904 * 0.02562 * 9 8 7 11 11 C 1.38806 * 120.00068 * 180.02562 * 9 8 7 12 12 N 1.31615 * 120.00371 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00135 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46937 * 89.99674 * 13 11 9 15 15 H 1.48494 * 109.47176 * 209.99875 * 13 11 9 16 16 H 1.48502 * 109.46724 * 330.00132 * 13 11 9 17 17 N 1.46503 * 109.46876 * 64.99796 * 5 4 2 18 18 C 1.34773 * 120.00132 * 274.99881 * 17 5 4 19 19 O 1.21682 * 119.99801 * 0.02562 * 18 17 5 20 20 C 1.46734 * 119.99561 * 180.02562 * 18 17 5 21 21 C 1.34882 * 125.04888 * 180.02562 * 20 18 17 22 22 C 1.38945 * 113.64687 * 179.73544 * 21 20 18 23 23 C 1.47334 * 122.95887 * 180.28021 * 22 21 20 24 24 N 1.34772 * 119.99693 * 180.24864 * 23 22 21 25 25 O 1.21616 * 120.00096 * 0.25587 * 23 22 21 26 26 C 1.36658 * 114.07834 * 0.48886 * 22 21 20 27 27 S 1.70598 * 110.53057 * 359.52618 * 26 22 21 28 28 H 1.09001 * 109.47334 * 299.99941 * 1 2 3 29 29 H 1.09000 * 109.47471 * 60.00428 * 1 2 3 30 30 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47334 * 240.00059 * 2 1 3 32 32 H 1.09006 * 109.46937 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46699 * 300.00045 * 3 2 1 34 34 H 1.09001 * 109.47069 * 59.99896 * 3 2 1 35 35 H 1.09004 * 109.46665 * 304.99989 * 4 2 1 36 36 H 1.09000 * 109.47374 * 185.00203 * 4 2 1 37 37 H 1.08997 * 109.46884 * 304.99870 * 7 5 4 38 38 H 1.09000 * 109.46996 * 64.99980 * 7 5 4 39 39 H 0.97001 * 119.99683 * 359.97438 * 8 7 5 40 40 H 0.97003 * 120.00817 * 180.02562 * 12 11 9 41 41 H 0.96994 * 119.99328 * 95.00587 * 17 5 4 42 42 H 1.07994 * 123.17755 * 0.02562 * 21 20 18 43 43 H 0.97004 * 120.00486 * 0.02562 * 24 23 22 44 44 H 0.97006 * 119.99726 * 179.97438 * 24 23 22 45 45 H 1.08002 * 124.73732 * 179.79748 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1881 6 1 0.5564 -2.2706 1.0527 7 6 2.0355 -2.8887 2.4919 8 7 1.7570 -4.3232 2.3876 9 6 2.0350 -5.1530 3.4409 10 1 2.4592 -4.7499 4.3486 11 6 1.7717 -6.5123 3.3418 12 7 1.2544 -7.0036 2.2359 13 14 2.1517 -7.6444 4.7784 14 1 0.9650 -7.7319 5.6669 15 1 2.4880 -8.9973 4.2669 16 1 3.3040 -7.1037 5.5433 17 7 2.3148 -2.8420 0.0626 18 6 1.7815 -2.7779 -1.1734 19 8 0.7359 -2.1826 -1.3548 20 6 2.4619 -3.4260 -2.3004 21 6 2.0213 -3.4255 -3.5752 22 6 2.8548 -4.1074 -4.4533 23 6 2.5731 -4.2295 -5.8943 24 7 3.4208 -4.9095 -6.6913 25 8 1.5757 -3.7166 -6.3645 26 6 3.9565 -4.6585 -3.8617 27 16 3.9715 -4.3179 -2.1901 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6053 -0.2616 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 3.0997 -2.7373 2.6721 38 1 1.4634 -2.4667 3.3182 39 1 1.3751 -4.6851 1.5728 40 1 1.0700 -7.9534 2.1667 41 1 3.1485 -3.3163 0.2072 42 1 1.1093 -2.9371 -3.8851 43 1 4.2163 -5.3189 -6.3162 44 1 3.2352 -4.9903 -7.6400 45 1 4.7144 -5.2265 -4.3807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753743664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:01 Heat of formation + Delta-G solvation = -68.727912 kcal Electronic energy + Delta-G solvation = -27393.186834 eV Core-core repulsion = 23536.049654 eV Total energy + Delta-G solvation = -3857.137181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34542 -40.77662 -38.44462 -37.51240 -36.44035 -35.07064 -34.80215 -33.08861 -31.36477 -30.16570 -27.94677 -27.17202 -26.61223 -24.98275 -24.28603 -22.12974 -21.53260 -20.83581 -20.11932 -19.88072 -19.11786 -18.12955 -17.97368 -17.28326 -16.94864 -16.69276 -16.36045 -15.97215 -15.61296 -15.46898 -15.19955 -15.04155 -14.75570 -14.50490 -14.36495 -14.15522 -13.82112 -13.77664 -13.52119 -13.23959 -13.01212 -12.94910 -12.77274 -12.55198 -12.37333 -12.28501 -12.07011 -11.86712 -11.65084 -11.39791 -11.25120 -11.24951 -10.99372 -10.89781 -10.76016 -10.13981 -9.90857 -9.65592 -8.98633 -7.91068 -5.20883 -0.66187 0.32709 0.57217 0.70414 1.50441 1.52021 1.59994 1.98881 2.11982 2.36267 2.57606 2.59533 3.43260 3.61788 3.76640 3.93745 4.00377 4.04138 4.09070 4.12983 4.25485 4.37463 4.42454 4.61460 4.66831 4.81600 4.87209 4.90621 4.91818 4.96977 5.00254 5.00545 5.10446 5.17292 5.23539 5.40088 5.53800 5.57143 5.58089 5.66787 5.84892 6.29014 6.38970 6.50395 7.18109 7.27099 7.36764 8.09600 8.33711 9.31726 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008335 B = 0.003940 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.494626 B = 7105.472603 C = 9684.875054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.113 4.113 5 C 0.145 3.855 6 H 0.068 0.932 7 C 0.144 3.856 8 N -0.743 5.743 9 C -0.243 4.243 10 H 0.079 0.921 11 C -0.070 4.070 12 N -0.967 5.967 13 Si 0.970 3.030 14 H -0.294 1.294 15 H -0.297 1.297 16 H -0.266 1.266 17 N -0.701 5.701 18 C 0.583 3.417 19 O -0.549 6.549 20 C -0.295 4.295 21 C -0.027 4.027 22 C -0.189 4.189 23 C 0.583 3.417 24 N -0.823 5.823 25 O -0.591 6.591 26 C -0.176 4.176 27 S 0.310 5.690 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.403 0.597 42 H 0.134 0.866 43 H 0.418 0.582 44 H 0.415 0.585 45 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.830 8.669 -12.815 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 C -0.197 4.197 4 C -0.152 4.152 5 C 0.041 3.959 6 H 0.086 0.914 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.374 4.374 10 H 0.097 0.903 11 C -0.263 4.263 12 N -0.618 5.618 13 Si 0.799 3.201 14 H -0.221 1.221 15 H -0.223 1.223 16 H -0.191 1.191 17 N -0.351 5.351 18 C 0.370 3.630 19 O -0.429 6.429 20 C -0.415 4.415 21 C -0.059 4.059 22 C -0.206 4.206 23 C 0.367 3.633 24 N -0.388 5.388 25 O -0.473 6.473 26 C -0.316 4.316 27 S 0.578 5.422 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.239 0.761 42 H 0.152 0.848 43 H 0.251 0.749 44 H 0.248 0.752 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 12.520 9.090 -11.645 19.365 hybrid contribution -0.941 -1.163 -1.017 1.808 sum 11.580 7.928 -12.662 18.901 Atomic orbital electron populations 1.21769 0.95871 1.01387 1.00123 1.21089 0.95798 0.96332 0.97791 1.21803 1.00988 0.95143 1.01783 1.21966 1.01950 0.92326 0.98908 1.21275 0.97190 0.92779 0.84679 0.91417 1.21129 0.98740 0.83890 0.94474 1.42533 1.76546 1.02877 1.16677 1.19616 1.33525 0.89393 0.94902 0.90284 1.25496 1.02515 0.98529 0.99719 1.69826 1.51344 1.12571 1.28011 0.85196 0.77823 0.78168 0.78867 1.22112 1.22348 1.19080 1.45767 1.27050 1.55492 1.06809 1.17177 0.84286 0.79247 0.82334 1.90807 1.23515 1.44095 1.84531 1.24202 1.05523 1.13881 0.97900 1.20234 0.99336 0.95796 0.90582 1.18888 0.98619 1.08222 0.94868 1.17718 0.82288 0.77459 0.85817 1.43422 1.27121 1.55687 1.12573 1.90831 1.29702 1.49993 1.76785 1.26637 1.01731 1.02729 1.00538 1.83212 1.14396 1.42413 1.02151 0.92869 0.94245 0.93329 0.92651 0.92175 0.93213 0.91926 0.89655 0.90224 0.94004 0.94352 0.79416 0.94154 0.76117 0.84778 0.74942 0.75236 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.99 8.03 71.98 0.58 -3.41 16 2 C -0.09 -2.46 2.38 -10.79 -0.03 -2.49 16 3 C -0.14 -2.98 9.19 71.98 0.66 -2.32 16 4 C -0.11 -2.88 4.36 30.59 0.13 -2.74 16 5 C 0.15 4.70 2.33 44.99 0.10 4.81 16 6 H 0.07 2.58 5.92 -2.39 -0.01 2.57 16 7 C 0.14 5.29 5.82 86.38 0.50 5.79 16 8 N -0.74 -35.70 5.43 -343.47 -1.87 -37.57 16 9 C -0.24 -12.86 9.99 84.03 0.84 -12.02 16 10 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 11 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 12 N -0.97 -57.60 13.06 21.65 0.28 -57.32 16 13 Si 0.97 44.55 29.55 68.60 2.03 46.58 16 14 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 15 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 17 N -0.70 -22.17 4.46 -446.45 -1.99 -24.16 16 18 C 0.58 19.80 6.34 86.46 0.55 20.35 16 19 O -0.55 -21.52 11.74 -4.29 -0.05 -21.57 16 20 C -0.29 -8.54 6.37 23.72 0.15 -8.39 16 21 C -0.03 -0.81 9.47 21.67 0.21 -0.60 16 22 C -0.19 -4.28 5.82 -21.09 -0.12 -4.40 16 23 C 0.58 13.44 8.06 86.64 0.70 14.14 16 24 N -0.82 -9.24 8.84 -175.95 -1.56 -10.80 16 25 O -0.59 -19.75 17.52 -4.08 -0.07 -19.82 16 26 C -0.18 -2.60 10.41 67.45 0.70 -1.90 16 27 S 0.31 6.04 22.09 -56.49 -1.25 4.79 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.72 4.75 -2.39 -0.01 1.71 16 31 H 0.06 1.73 5.19 -2.39 -0.01 1.71 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.37 19.67 7.33 -92.71 -0.68 18.99 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.40 11.90 7.68 -92.71 -0.71 11.19 16 42 H 0.13 4.63 7.95 -2.91 -0.02 4.60 16 43 H 0.42 1.45 7.29 -92.71 -0.68 0.78 16 44 H 0.42 3.63 8.93 -92.70 -0.83 2.80 16 45 H 0.23 0.84 6.99 -2.91 -0.02 0.82 16 Total: -1.00 -76.96 379.55 -0.86 -77.81 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -1.82 Total: 38.66 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 5.44 Total: 3.41 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -5.13 Total: -129.85 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.12 Total: -41.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.25 Total: 4.79 kcal Total: -76.96 -0.86 -77.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753743664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.084 kcal (2) G-P(sol) polarization free energy of solvation -76.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds