Wall clock time and date at job start Tue Mar 31 2020 23:16:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53002 * 109.47159 * 2 1
4 4 C 1.52995 * 109.47284 * 120.00184 * 2 1 3
5 5 C 1.50701 * 109.47077 * 240.00189 * 2 1 3
6 6 C 1.34228 * 122.11045 * 74.99929 * 5 2 1
7 7 S 1.71067 * 109.09490 * 180.02562 * 6 5 2
8 8 C 1.76098 * 90.30114 * 0.02562 * 7 6 5
9 9 C 1.47253 * 125.54363 * 180.02562 * 8 7 6
10 10 O 1.21623 * 120.00169 * 179.97438 * 9 8 7
11 11 N 1.34775 * 120.00215 * 359.97438 * 9 8 7
12 12 C 1.46501 * 120.00393 * 180.02562 * 11 9 8
13 13 C 1.53002 * 109.47210 * 180.02562 * 12 11 9
14 14 O 1.42894 * 112.94643 * 53.40402 * 13 12 11
15 15 C 1.53942 * 113.73893 * 281.67139 * 13 12 11
16 16 N 1.47579 * 86.11827 * 222.05191 * 15 13 12
17 17 C 1.36941 * 134.49443 * 204.64730 * 16 15 13
18 18 H 1.07993 * 120.00245 * 173.47484 * 17 16 15
19 19 C 1.38809 * 119.99686 * 353.47378 * 17 16 15
20 20 N 1.31629 * 120.00208 * 5.06939 * 19 17 16
21 21 Si 1.86804 * 120.00206 * 185.06632 * 19 17 16
22 22 H 1.48499 * 109.47073 * 94.98423 * 21 19 17
23 23 H 1.48501 * 109.47366 * 214.98926 * 21 19 17
24 24 H 1.48506 * 109.46725 * 334.99284 * 21 19 17
25 25 C 1.47579 * 91.01434 * 24.63722 * 16 15 13
26 26 N 1.30564 * 108.91373 * 359.74197 * 8 7 6
27 27 H 1.09003 * 109.47492 * 60.00086 * 1 2 3
28 28 H 1.09004 * 109.46998 * 179.97438 * 1 2 3
29 29 H 1.09003 * 109.47496 * 299.99925 * 1 2 3
30 30 H 1.09000 * 109.47112 * 60.00135 * 3 2 1
31 31 H 1.08994 * 109.47511 * 179.97438 * 3 2 1
32 32 H 1.08999 * 109.47106 * 299.99856 * 3 2 1
33 33 H 1.08996 * 109.47394 * 59.99689 * 4 2 1
34 34 H 1.08994 * 109.47641 * 180.02562 * 4 2 1
35 35 H 1.09000 * 109.47006 * 299.99877 * 4 2 1
36 36 H 1.07999 * 125.45278 * 359.96941 * 6 5 2
37 37 H 0.96998 * 119.99731 * 359.97438 * 11 9 8
38 38 H 1.09005 * 109.46965 * 299.99398 * 12 11 9
39 39 H 1.08992 * 109.47126 * 59.99370 * 12 11 9
40 40 H 0.96700 * 114.00325 * 309.66955 * 14 13 12
41 41 H 1.09001 * 113.77187 * 336.35216 * 15 13 12
42 42 H 1.09002 * 113.77080 * 107.74374 * 15 13 12
43 43 H 0.97003 * 120.00037 * 179.97438 * 20 19 17
44 44 H 1.08997 * 113.77117 * 221.05803 * 25 16 15
45 45 H 1.09003 * 113.76334 * 89.66569 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 2.0323 -0.7104 -1.2305
6 6 1.9926 -0.1446 -2.4471
7 16 2.6416 -1.2363 -3.5933
8 6 2.9306 -2.4169 -2.3190
9 6 3.5251 -3.7509 -2.5069
10 8 3.6797 -4.4878 -1.5517
11 7 3.8979 -4.1554 -3.7373
12 6 4.4888 -5.4828 -3.9243
13 6 4.8199 -5.6899 -5.4036
14 8 5.6271 -4.6429 -5.9457
15 6 3.5967 -6.0439 -6.2688
16 7 4.4742 -7.0307 -6.9278
17 6 4.4850 -7.6361 -8.1561
18 1 5.3165 -8.2633 -8.4416
19 6 3.4273 -7.4434 -9.0341
20 7 2.4629 -6.6015 -8.7281
21 14 3.3725 -8.3790 -10.6500
22 1 2.5495 -9.6040 -10.4851
23 1 2.7731 -7.5176 -11.7007
24 1 4.7516 -8.7593 -11.0488
25 6 5.3353 -7.1029 -5.7315
26 7 2.5377 -1.9146 -1.1797
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 1.6767 1.9563 0.8900
31 1 3.1299 1.4426 0.0005
32 1 1.6767 1.9563 -0.8900
33 1 1.6766 -1.7489 1.2492
34 1 3.1299 -0.7209 1.2495
35 1 1.6767 -0.2074 2.1392
36 1 1.6112 0.8415 -2.6673
37 1 3.7742 -3.5679 -4.4991
38 1 5.4017 -5.5606 -3.3338
39 1 3.7803 -6.2449 -3.5999
40 1 5.2907 -3.7541 -5.7670
41 1 2.7763 -6.4912 -5.7076
42 1 3.2739 -5.2356 -6.9249
43 1 1.7239 -6.4667 -9.3419
44 1 6.4007 -7.1403 -5.9586
45 1 5.0256 -7.8614 -5.0125
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754769303.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:16:55
Heat of formation + Delta-G solvation = -9.963225 kcal
Electronic energy + Delta-G solvation = -26866.089882 eV
Core-core repulsion = 23011.500930 eV
Total energy + Delta-G solvation = -3854.588952 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 21.10 seconds
Orbital eigenvalues (eV)
-41.67446 -41.01071 -39.97731 -36.97629 -36.53941 -35.44904 -34.02292 -31.50487
-30.37151 -28.76961 -28.12930 -27.81514 -26.80873 -26.42688 -24.17705 -23.13541
-21.63388 -20.95034 -20.17443 -19.40337 -18.74583 -18.16623 -17.33093 -17.31268
-16.87217 -16.75319 -16.20542 -15.86355 -15.64928 -15.58966 -15.07250 -14.82486
-14.75269 -14.53411 -14.43415 -14.26625 -13.91035 -13.44199 -13.29248 -13.06004
-12.99464 -12.96911 -12.85730 -12.56672 -12.55377 -12.21955 -11.93381 -11.89452
-11.85635 -11.74628 -11.61637 -11.32860 -10.96433 -10.77018 -10.75306 -10.73538
-10.39472 -9.77044 -8.92216 -7.92328 -5.23845 -0.85447 0.09651 0.55862
1.21470 1.46180 1.47675 1.56475 1.60111 2.05938 2.46699 3.03228
3.12359 3.26876 3.33973 3.54299 3.64678 3.82662 3.84926 4.06032
4.15877 4.26394 4.30790 4.33211 4.67179 4.71997 4.77796 4.78421
4.79127 4.82051 4.90389 4.94366 5.02572 5.03167 5.05445 5.16685
5.18614 5.30174 5.31852 5.42126 5.45868 5.49662 5.91784 6.06131
6.59003 6.77701 6.87342 6.91792 7.59213 8.52955 9.25027
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.022177 B = 0.002332 C = 0.002224
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1262.252440 B =12002.171891 C =12588.475862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.002 3.998
3 C -0.135 4.135
4 C -0.129 4.129
5 C 0.047 3.953
6 C -0.246 4.246
7 S 0.248 5.752
8 C -0.049 4.049
9 C 0.599 3.401
10 O -0.545 6.545
11 N -0.704 5.704
12 C 0.118 3.882
13 C 0.097 3.903
14 O -0.537 6.537
15 C 0.145 3.855
16 N -0.636 5.636
17 C -0.233 4.233
18 H 0.082 0.918
19 C -0.065 4.065
20 N -0.949 5.949
21 Si 0.977 3.023
22 H -0.288 1.288
23 H -0.293 1.293
24 H -0.269 1.269
25 C 0.131 3.869
26 N -0.419 5.419
27 H 0.069 0.931
28 H 0.039 0.961
29 H 0.081 0.919
30 H 0.079 0.921
31 H 0.050 0.950
32 H 0.074 0.926
33 H 0.040 0.960
34 H 0.042 0.958
35 H 0.075 0.925
36 H 0.218 0.782
37 H 0.407 0.593
38 H 0.090 0.910
39 H 0.082 0.918
40 H 0.382 0.618
41 H 0.028 0.972
42 H 0.048 0.952
43 H 0.249 0.751
44 H 0.060 0.940
45 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.234 20.161 16.010 25.841
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.001 4.001
3 C -0.193 4.193
4 C -0.186 4.186
5 C -0.091 4.091
6 C -0.387 4.387
7 S 0.503 5.497
8 C -0.323 4.323
9 C 0.382 3.618
10 O -0.422 6.422
11 N -0.357 5.357
12 C -0.007 4.007
13 C 0.054 3.946
14 O -0.343 6.343
15 C 0.019 3.981
16 N -0.362 5.362
17 C -0.361 4.361
18 H 0.100 0.900
19 C -0.258 4.258
20 N -0.598 5.598
21 Si 0.805 3.195
22 H -0.215 1.215
23 H -0.219 1.219
24 H -0.194 1.194
25 C 0.006 3.994
26 N -0.136 5.136
27 H 0.088 0.912
28 H 0.058 0.942
29 H 0.099 0.901
30 H 0.098 0.902
31 H 0.069 0.931
32 H 0.093 0.907
33 H 0.060 0.940
34 H 0.061 0.939
35 H 0.094 0.906
36 H 0.235 0.765
37 H 0.244 0.756
38 H 0.108 0.892
39 H 0.100 0.900
40 H 0.231 0.769
41 H 0.046 0.954
42 H 0.066 0.934
43 H 0.058 0.942
44 H 0.078 0.922
45 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -1.575 18.669 15.504 24.319
hybrid contribution -1.006 0.224 -0.353 1.090
sum -2.582 18.893 15.151 24.355
Atomic orbital electron populations
1.21884 0.92219 1.01635 1.03563 1.19339 0.96293 0.95149 0.89321
1.21919 1.00961 0.92631 1.03794 1.21687 1.00407 0.99863 0.96658
1.20589 1.01640 0.89829 0.97016 1.26993 1.07858 1.07942 0.95897
1.83746 1.50731 1.04899 1.10311 1.27062 1.11165 1.00758 0.93283
1.16889 0.77705 0.84035 0.83187 1.90821 1.55208 1.55032 1.41153
1.45536 1.63155 1.18742 1.08304 1.21926 0.99417 0.83587 0.95723
1.23197 0.92689 0.89704 0.89047 1.86586 1.51126 1.17129 1.79470
1.22810 0.91886 0.91883 0.91512 1.46022 1.30272 1.49896 1.10040
1.19355 1.03300 1.22995 0.90464 0.90024 1.25611 0.96666 1.01098
1.02449 1.69980 1.12818 1.38963 1.38053 0.85080 0.77846 0.77638
0.78899 1.21533 1.21944 1.19361 1.22794 0.96374 0.91955 0.88311
1.66420 1.09008 1.11550 1.26619 0.91185 0.94218 0.90057 0.90231
0.93078 0.90691 0.94033 0.93892 0.90646 0.76487 0.75592 0.89160
0.90012 0.76903 0.95383 0.93357 0.94203 0.92151 0.90884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.69 8.42 71.98 0.61 -1.08 16
2 C 0.00 0.03 0.90 -52.93 -0.05 -0.02 16
3 C -0.14 -1.30 8.12 71.98 0.58 -0.71 16
4 C -0.13 -2.31 7.89 71.98 0.57 -1.75 16
5 C 0.05 0.93 5.38 41.81 0.22 1.15 16
6 C -0.25 -3.49 10.10 66.90 0.68 -2.81 16
7 S 0.25 3.99 22.31 -56.49 -1.26 2.73 16
8 C -0.05 -1.25 7.46 87.25 0.65 -0.60 16
9 C 0.60 17.75 7.81 86.61 0.68 18.42 16
10 O -0.55 -20.45 17.07 -4.11 -0.07 -20.52 16
11 N -0.70 -17.94 5.33 -466.54 -2.49 -20.42 16
12 C 0.12 3.36 5.28 86.38 0.46 3.82 16
13 C 0.10 3.33 1.52 -10.14 -0.02 3.31 16
14 O -0.54 -17.89 13.51 -148.98 -2.01 -19.91 16
15 C 0.14 6.50 6.83 86.48 0.59 7.09 16
16 N -0.64 -32.35 3.70 -720.30 -2.66 -35.02 16
17 C -0.23 -13.12 10.70 84.03 0.90 -12.22 16
18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16
19 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16
20 N -0.95 -56.23 11.51 21.65 0.25 -55.98 16
21 Si 0.98 45.63 29.56 68.60 2.03 47.66 16
22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16
23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16
24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
25 C 0.13 5.15 8.34 86.48 0.72 5.87 16
26 N -0.42 -11.27 9.52 -178.24 -1.70 -12.97 16
27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
28 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16
29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16
31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16
32 H 0.07 0.46 7.07 -2.39 -0.02 0.44 16
33 H 0.04 0.94 7.95 -2.39 -0.02 0.92 16
34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
36 H 0.22 1.44 7.23 -2.91 -0.02 1.42 16
37 H 0.41 8.57 6.45 -92.71 -0.60 7.98 16
38 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16
39 H 0.08 2.46 8.04 -2.39 -0.02 2.44 16
40 H 0.38 9.04 7.61 -74.06 -0.56 8.48 16
41 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16
42 H 0.05 2.40 7.35 -2.39 -0.02 2.38 16
43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16
44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
45 H 0.07 2.58 8.10 -2.39 -0.02 2.57 16
Total: -1.00 -77.43 385.32 -1.00 -78.43
By element:
Atomic # 1 Polarization: 18.89 SS G_CDS: -0.14 Total: 18.74 kcal
Atomic # 6 Polarization: 10.20 SS G_CDS: 7.06 Total: 17.26 kcal
Atomic # 7 Polarization: -117.79 SS G_CDS: -6.60 Total: -124.39 kcal
Atomic # 8 Polarization: -38.34 SS G_CDS: -2.08 Total: -40.43 kcal
Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal
Atomic # 16 Polarization: 3.99 SS G_CDS: -1.26 Total: 2.73 kcal
Total: -77.43 -1.00 -78.43 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754769303.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.464 kcal
(2) G-P(sol) polarization free energy of solvation -77.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.966 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 21.10 seconds