Wall clock time and date at job start Tue Mar 31 2020 23:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47159 * 2 1 4 4 C 1.52995 * 109.47284 * 120.00184 * 2 1 3 5 5 C 1.50701 * 109.47077 * 240.00189 * 2 1 3 6 6 C 1.34228 * 122.11045 * 74.99929 * 5 2 1 7 7 S 1.71067 * 109.09490 * 180.02562 * 6 5 2 8 8 C 1.76098 * 90.30114 * 0.02562 * 7 6 5 9 9 C 1.47253 * 125.54363 * 180.02562 * 8 7 6 10 10 O 1.21623 * 120.00169 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00215 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00393 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47210 * 180.02562 * 12 11 9 14 14 O 1.42894 * 112.94643 * 53.40402 * 13 12 11 15 15 C 1.53942 * 113.73893 * 281.67139 * 13 12 11 16 16 N 1.47579 * 86.11827 * 222.05191 * 15 13 12 17 17 C 1.36941 * 134.49443 * 204.64730 * 16 15 13 18 18 H 1.07993 * 120.00245 * 173.47484 * 17 16 15 19 19 C 1.38809 * 119.99686 * 353.47378 * 17 16 15 20 20 N 1.31629 * 120.00208 * 5.06939 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 185.06632 * 19 17 16 22 22 H 1.48499 * 109.47073 * 94.98423 * 21 19 17 23 23 H 1.48501 * 109.47366 * 214.98926 * 21 19 17 24 24 H 1.48506 * 109.46725 * 334.99284 * 21 19 17 25 25 C 1.47579 * 91.01434 * 24.63722 * 16 15 13 26 26 N 1.30564 * 108.91373 * 359.74197 * 8 7 6 27 27 H 1.09003 * 109.47492 * 60.00086 * 1 2 3 28 28 H 1.09004 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47496 * 299.99925 * 1 2 3 30 30 H 1.09000 * 109.47112 * 60.00135 * 3 2 1 31 31 H 1.08994 * 109.47511 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47106 * 299.99856 * 3 2 1 33 33 H 1.08996 * 109.47394 * 59.99689 * 4 2 1 34 34 H 1.08994 * 109.47641 * 180.02562 * 4 2 1 35 35 H 1.09000 * 109.47006 * 299.99877 * 4 2 1 36 36 H 1.07999 * 125.45278 * 359.96941 * 6 5 2 37 37 H 0.96998 * 119.99731 * 359.97438 * 11 9 8 38 38 H 1.09005 * 109.46965 * 299.99398 * 12 11 9 39 39 H 1.08992 * 109.47126 * 59.99370 * 12 11 9 40 40 H 0.96700 * 114.00325 * 309.66955 * 14 13 12 41 41 H 1.09001 * 113.77187 * 336.35216 * 15 13 12 42 42 H 1.09002 * 113.77080 * 107.74374 * 15 13 12 43 43 H 0.97003 * 120.00037 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.77117 * 221.05803 * 25 16 15 45 45 H 1.09003 * 113.76334 * 89.66569 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0323 -0.7104 -1.2305 6 6 1.9926 -0.1446 -2.4471 7 16 2.6416 -1.2363 -3.5933 8 6 2.9306 -2.4169 -2.3190 9 6 3.5251 -3.7509 -2.5069 10 8 3.6797 -4.4878 -1.5517 11 7 3.8979 -4.1554 -3.7373 12 6 4.4888 -5.4828 -3.9243 13 6 4.8199 -5.6899 -5.4036 14 8 5.6271 -4.6429 -5.9457 15 6 3.5967 -6.0439 -6.2688 16 7 4.4742 -7.0307 -6.9278 17 6 4.4850 -7.6361 -8.1561 18 1 5.3165 -8.2633 -8.4416 19 6 3.4273 -7.4434 -9.0341 20 7 2.4629 -6.6015 -8.7281 21 14 3.3725 -8.3790 -10.6500 22 1 2.5495 -9.6040 -10.4851 23 1 2.7731 -7.5176 -11.7007 24 1 4.7516 -8.7593 -11.0488 25 6 5.3353 -7.1029 -5.7315 26 7 2.5377 -1.9146 -1.1797 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 -1.7489 1.2492 34 1 3.1299 -0.7209 1.2495 35 1 1.6767 -0.2074 2.1392 36 1 1.6112 0.8415 -2.6673 37 1 3.7742 -3.5679 -4.4991 38 1 5.4017 -5.5606 -3.3338 39 1 3.7803 -6.2449 -3.5999 40 1 5.2907 -3.7541 -5.7670 41 1 2.7763 -6.4912 -5.7076 42 1 3.2739 -5.2356 -6.9249 43 1 1.7239 -6.4667 -9.3419 44 1 6.4007 -7.1403 -5.9586 45 1 5.0256 -7.8614 -5.0125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754769303.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:55 Heat of formation + Delta-G solvation = -9.963225 kcal Electronic energy + Delta-G solvation = -26866.089882 eV Core-core repulsion = 23011.500930 eV Total energy + Delta-G solvation = -3854.588952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 21.10 seconds Orbital eigenvalues (eV) -41.67446 -41.01071 -39.97731 -36.97629 -36.53941 -35.44904 -34.02292 -31.50487 -30.37151 -28.76961 -28.12930 -27.81514 -26.80873 -26.42688 -24.17705 -23.13541 -21.63388 -20.95034 -20.17443 -19.40337 -18.74583 -18.16623 -17.33093 -17.31268 -16.87217 -16.75319 -16.20542 -15.86355 -15.64928 -15.58966 -15.07250 -14.82486 -14.75269 -14.53411 -14.43415 -14.26625 -13.91035 -13.44199 -13.29248 -13.06004 -12.99464 -12.96911 -12.85730 -12.56672 -12.55377 -12.21955 -11.93381 -11.89452 -11.85635 -11.74628 -11.61637 -11.32860 -10.96433 -10.77018 -10.75306 -10.73538 -10.39472 -9.77044 -8.92216 -7.92328 -5.23845 -0.85447 0.09651 0.55862 1.21470 1.46180 1.47675 1.56475 1.60111 2.05938 2.46699 3.03228 3.12359 3.26876 3.33973 3.54299 3.64678 3.82662 3.84926 4.06032 4.15877 4.26394 4.30790 4.33211 4.67179 4.71997 4.77796 4.78421 4.79127 4.82051 4.90389 4.94366 5.02572 5.03167 5.05445 5.16685 5.18614 5.30174 5.31852 5.42126 5.45868 5.49662 5.91784 6.06131 6.59003 6.77701 6.87342 6.91792 7.59213 8.52955 9.25027 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022177 B = 0.002332 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.252440 B =12002.171891 C =12588.475862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.002 3.998 3 C -0.135 4.135 4 C -0.129 4.129 5 C 0.047 3.953 6 C -0.246 4.246 7 S 0.248 5.752 8 C -0.049 4.049 9 C 0.599 3.401 10 O -0.545 6.545 11 N -0.704 5.704 12 C 0.118 3.882 13 C 0.097 3.903 14 O -0.537 6.537 15 C 0.145 3.855 16 N -0.636 5.636 17 C -0.233 4.233 18 H 0.082 0.918 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.269 1.269 25 C 0.131 3.869 26 N -0.419 5.419 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.218 0.782 37 H 0.407 0.593 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.382 0.618 41 H 0.028 0.972 42 H 0.048 0.952 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 20.161 16.010 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.001 4.001 3 C -0.193 4.193 4 C -0.186 4.186 5 C -0.091 4.091 6 C -0.387 4.387 7 S 0.503 5.497 8 C -0.323 4.323 9 C 0.382 3.618 10 O -0.422 6.422 11 N -0.357 5.357 12 C -0.007 4.007 13 C 0.054 3.946 14 O -0.343 6.343 15 C 0.019 3.981 16 N -0.362 5.362 17 C -0.361 4.361 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.805 3.195 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.194 1.194 25 C 0.006 3.994 26 N -0.136 5.136 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.244 0.756 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.231 0.769 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.575 18.669 15.504 24.319 hybrid contribution -1.006 0.224 -0.353 1.090 sum -2.582 18.893 15.151 24.355 Atomic orbital electron populations 1.21884 0.92219 1.01635 1.03563 1.19339 0.96293 0.95149 0.89321 1.21919 1.00961 0.92631 1.03794 1.21687 1.00407 0.99863 0.96658 1.20589 1.01640 0.89829 0.97016 1.26993 1.07858 1.07942 0.95897 1.83746 1.50731 1.04899 1.10311 1.27062 1.11165 1.00758 0.93283 1.16889 0.77705 0.84035 0.83187 1.90821 1.55208 1.55032 1.41153 1.45536 1.63155 1.18742 1.08304 1.21926 0.99417 0.83587 0.95723 1.23197 0.92689 0.89704 0.89047 1.86586 1.51126 1.17129 1.79470 1.22810 0.91886 0.91883 0.91512 1.46022 1.30272 1.49896 1.10040 1.19355 1.03300 1.22995 0.90464 0.90024 1.25611 0.96666 1.01098 1.02449 1.69980 1.12818 1.38963 1.38053 0.85080 0.77846 0.77638 0.78899 1.21533 1.21944 1.19361 1.22794 0.96374 0.91955 0.88311 1.66420 1.09008 1.11550 1.26619 0.91185 0.94218 0.90057 0.90231 0.93078 0.90691 0.94033 0.93892 0.90646 0.76487 0.75592 0.89160 0.90012 0.76903 0.95383 0.93357 0.94203 0.92151 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.42 71.98 0.61 -1.08 16 2 C 0.00 0.03 0.90 -52.93 -0.05 -0.02 16 3 C -0.14 -1.30 8.12 71.98 0.58 -0.71 16 4 C -0.13 -2.31 7.89 71.98 0.57 -1.75 16 5 C 0.05 0.93 5.38 41.81 0.22 1.15 16 6 C -0.25 -3.49 10.10 66.90 0.68 -2.81 16 7 S 0.25 3.99 22.31 -56.49 -1.26 2.73 16 8 C -0.05 -1.25 7.46 87.25 0.65 -0.60 16 9 C 0.60 17.75 7.81 86.61 0.68 18.42 16 10 O -0.55 -20.45 17.07 -4.11 -0.07 -20.52 16 11 N -0.70 -17.94 5.33 -466.54 -2.49 -20.42 16 12 C 0.12 3.36 5.28 86.38 0.46 3.82 16 13 C 0.10 3.33 1.52 -10.14 -0.02 3.31 16 14 O -0.54 -17.89 13.51 -148.98 -2.01 -19.91 16 15 C 0.14 6.50 6.83 86.48 0.59 7.09 16 16 N -0.64 -32.35 3.70 -720.30 -2.66 -35.02 16 17 C -0.23 -13.12 10.70 84.03 0.90 -12.22 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.95 -56.23 11.51 21.65 0.25 -55.98 16 21 Si 0.98 45.63 29.56 68.60 2.03 47.66 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.13 5.15 8.34 86.48 0.72 5.87 16 26 N -0.42 -11.27 9.52 -178.24 -1.70 -12.97 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.46 7.07 -2.39 -0.02 0.44 16 33 H 0.04 0.94 7.95 -2.39 -0.02 0.92 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.22 1.44 7.23 -2.91 -0.02 1.42 16 37 H 0.41 8.57 6.45 -92.71 -0.60 7.98 16 38 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.08 2.46 8.04 -2.39 -0.02 2.44 16 40 H 0.38 9.04 7.61 -74.06 -0.56 8.48 16 41 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 42 H 0.05 2.40 7.35 -2.39 -0.02 2.38 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.07 2.58 8.10 -2.39 -0.02 2.57 16 Total: -1.00 -77.43 385.32 -1.00 -78.43 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.14 Total: 18.74 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 7.06 Total: 17.26 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -6.60 Total: -124.39 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -2.08 Total: -40.43 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.26 Total: 2.73 kcal Total: -77.43 -1.00 -78.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754769303.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.464 kcal (2) G-P(sol) polarization free energy of solvation -77.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.10 seconds