Wall clock time and date at job start Tue Mar 31 2020 22:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47276 * 2 1 4 4 C 1.50696 * 109.46887 * 120.00194 * 2 1 3 5 5 S 1.70945 * 125.59019 * 295.09321 * 4 2 1 6 6 C 1.70763 * 91.12921 * 179.97438 * 5 4 2 7 7 N 1.28648 * 110.56440 * 359.97438 * 6 5 4 8 8 C 1.33560 * 115.76243 * 0.02562 * 7 6 5 9 9 C 1.47268 * 123.13825 * 179.97438 * 8 7 6 10 10 O 1.21632 * 119.99948 * 255.58923 * 9 8 7 11 11 N 1.34778 * 119.99953 * 75.58486 * 9 8 7 12 12 C 1.47147 * 120.98232 * 4.79048 * 11 9 8 13 13 C 1.53717 * 108.16171 * 129.43127 * 12 11 9 14 14 O 1.42961 * 109.14761 * 52.53508 * 13 12 11 15 15 C 1.42960 * 114.16627 * 297.29001 * 14 13 12 16 16 H 1.09005 * 109.55536 * 302.63242 * 15 14 13 17 17 C 1.52999 * 109.51177 * 182.50651 * 15 14 13 18 18 N 1.46507 * 109.47264 * 65.25293 * 17 15 14 19 19 C 1.36940 * 119.99853 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00121 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99706 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99823 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99968 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46824 * 90.00348 * 23 21 19 25 25 H 1.48498 * 109.46957 * 209.99683 * 23 21 19 26 26 H 1.48498 * 109.47101 * 330.00043 * 23 21 19 27 27 C 1.47150 * 120.97969 * 185.06611 * 11 9 8 28 28 H 1.08996 * 109.47582 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46974 * 300.00167 * 1 2 3 30 30 H 1.08999 * 109.46841 * 59.99945 * 1 2 3 31 31 H 1.09003 * 109.46974 * 239.99833 * 2 1 3 32 32 H 1.09005 * 109.47270 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47563 * 300.00214 * 3 2 1 34 34 H 1.09003 * 109.47255 * 60.00005 * 3 2 1 35 35 H 1.08005 * 124.71688 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.67892 * 249.20565 * 12 11 9 37 37 H 1.08991 * 109.68565 * 9.76038 * 12 11 9 38 38 H 1.09004 * 109.65579 * 292.56936 * 13 12 11 39 39 H 1.09001 * 109.43862 * 172.37215 * 13 12 11 40 40 H 1.09007 * 109.47350 * 185.25048 * 17 15 14 41 41 H 1.09000 * 109.47185 * 305.25459 * 17 15 14 42 42 H 0.96991 * 119.99653 * 0.02562 * 18 17 15 43 43 H 0.97005 * 119.99983 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.68476 * 350.24138 * 27 11 9 45 45 H 1.09004 * 109.67970 * 110.75419 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 16 1.8080 -0.1875 2.8424 6 6 2.6630 -1.5412 3.4362 7 7 3.0587 -2.2870 2.4656 8 6 2.7333 -1.8665 1.2404 9 6 3.1038 -2.5940 0.0147 10 8 4.0089 -2.1831 -0.6863 11 7 2.4401 -3.7152 -0.3302 12 6 1.2756 -4.1743 0.4434 13 6 0.1238 -4.4431 -0.5385 14 8 0.5833 -5.3171 -1.5723 15 6 1.6365 -4.7744 -2.3724 16 1 1.3086 -3.8358 -2.8193 17 6 2.0016 -5.7668 -3.4781 18 7 0.8669 -5.9185 -4.3924 19 6 0.9614 -6.7624 -5.4667 20 1 1.8725 -7.3157 -5.6403 21 6 -0.1139 -6.9065 -6.3327 22 7 -0.0229 -7.7171 -7.3656 23 14 -1.6900 -5.9499 -6.0320 24 1 -1.6182 -4.6440 -6.7353 25 1 -2.8462 -6.7265 -6.5470 26 1 -1.8584 -5.7189 -4.5748 27 6 2.8622 -4.5196 -1.4878 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.8461 -1.7430 4.4813 36 1 1.5277 -5.0905 0.9774 37 1 0.9804 -3.4034 1.1551 38 1 -0.2101 -3.5031 -0.9781 39 1 -0.7043 -4.9117 -0.0068 40 1 2.8653 -5.3950 -4.0295 41 1 2.2423 -6.7329 -3.0343 42 1 0.0489 -5.4213 -4.2366 43 1 -0.7745 -7.8182 -7.9705 44 1 3.6184 -3.9773 -2.0555 45 1 3.2720 -5.4697 -1.1448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755012924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:20 Heat of formation + Delta-G solvation = -17.142311 kcal Electronic energy + Delta-G solvation = -27968.869242 eV Core-core repulsion = 24113.968981 eV Total energy + Delta-G solvation = -3854.900261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 51.33 seconds Orbital eigenvalues (eV) -41.16381 -39.59721 -38.16714 -36.25650 -35.20862 -34.55832 -32.29211 -30.74589 -30.23591 -28.34098 -27.63031 -26.64347 -25.49369 -23.60644 -23.02587 -21.99979 -21.49746 -20.87188 -19.04984 -18.38176 -17.66441 -17.35224 -16.85767 -16.40234 -15.87442 -15.29749 -15.12635 -14.84237 -14.64016 -14.56995 -14.35690 -14.26842 -14.11259 -13.53030 -13.30744 -13.19405 -12.83039 -12.68720 -12.56346 -12.45600 -12.28225 -11.96127 -11.85081 -11.71700 -11.32512 -11.23741 -11.08729 -10.85311 -10.60762 -10.28735 -10.18657 -10.09985 -10.02200 -9.86683 -9.56228 -9.30748 -8.88769 -8.69412 -7.20534 -5.73511 -3.08797 0.18053 0.80650 1.20691 1.94513 2.33491 2.69186 3.40856 3.45502 3.47991 3.77040 3.81130 4.07767 4.35689 4.47458 4.55665 4.62758 4.63322 4.77335 4.86056 4.92288 4.98242 5.01514 5.14974 5.17685 5.26930 5.35146 5.40344 5.44396 5.50769 5.56093 5.58154 5.61305 5.71600 5.75154 5.76505 5.78841 5.92951 6.15918 6.45781 6.59376 7.02959 7.06489 7.28535 7.79673 8.01686 8.45104 9.24217 9.96483 10.16625 11.44842 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.002888 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.549888 B = 9691.431792 C =10169.875640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C -0.146 4.146 4 C -0.202 4.202 5 S 0.206 5.794 6 C -0.005 4.005 7 N -0.433 5.433 8 C 0.018 3.982 9 C 0.603 3.397 10 O -0.522 6.522 11 N -0.599 5.599 12 C 0.080 3.920 13 C 0.046 3.954 14 O -0.359 6.359 15 C 0.070 3.930 16 H 0.064 0.936 17 C 0.168 3.832 18 N -0.750 5.750 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.005 3.995 22 N -0.935 5.935 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.274 1.274 27 C 0.086 3.914 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.205 0.795 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.039 0.961 42 H 0.364 0.636 43 H 0.259 0.741 44 H 0.106 0.894 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 19.308 26.208 32.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.048 4.048 3 C -0.203 4.203 4 C -0.325 4.325 5 S 0.462 5.538 6 C -0.304 4.304 7 N -0.147 5.147 8 C -0.117 4.117 9 C 0.387 3.613 10 O -0.397 6.397 11 N -0.333 5.333 12 C -0.043 4.043 13 C -0.032 4.032 14 O -0.277 6.277 15 C 0.011 3.989 16 H 0.082 0.918 17 C 0.040 3.960 18 N -0.396 5.396 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.191 4.191 22 N -0.583 5.583 23 Si 0.713 3.287 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.200 1.200 27 C -0.037 4.037 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.222 0.778 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.197 0.803 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.502 19.487 26.262 32.737 hybrid contribution -0.764 0.238 -0.296 0.853 sum 0.739 19.724 25.967 32.617 Atomic orbital electron populations 1.21937 0.93046 1.02635 1.02799 1.19755 0.96282 0.96144 0.92604 1.21915 1.01953 0.93899 1.02559 1.25539 1.05299 0.99890 1.01794 1.82771 1.49925 1.25632 0.95432 1.28411 1.02424 0.95963 1.03632 1.67011 1.19793 1.30407 0.97455 1.20147 1.03178 0.95680 0.92730 1.17098 0.81493 0.79533 0.83202 1.90843 1.29890 1.66306 1.52641 1.48008 1.30732 1.24222 1.30302 1.22510 0.86170 1.01101 0.94537 1.23018 0.95448 0.95359 0.89368 1.88154 1.53279 1.41381 1.44899 1.22873 0.86448 0.98413 0.91159 0.91804 1.20606 0.91650 0.95746 0.88008 1.42569 1.13195 1.54048 1.29789 1.19055 1.00875 1.17466 0.99867 0.89117 1.24650 0.97819 0.99380 0.97245 1.69703 1.31644 1.40490 1.16433 0.86550 0.84549 0.79846 0.77752 1.21171 1.21726 1.20015 1.22417 0.98377 0.96047 0.86810 0.92161 0.92137 0.91118 0.88954 0.91859 0.91196 0.92309 0.77817 0.89940 0.89826 0.92886 0.87661 0.93611 0.94314 0.80338 0.93079 0.87597 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.16 37.16 0.34 -0.68 16 2 C -0.03 -0.24 3.19 -91.78 -0.29 -0.53 16 3 C -0.15 -1.06 9.05 37.15 0.34 -0.72 16 4 C -0.20 -1.90 5.03 -35.39 -0.18 -2.07 16 5 S 0.21 1.26 22.45 -107.50 -2.41 -1.16 16 6 C -0.01 -0.04 12.17 51.43 0.63 0.59 16 7 N -0.43 -4.81 10.68 -12.36 -0.13 -4.94 16 8 C 0.02 0.22 4.48 -84.52 -0.38 -0.16 16 9 C 0.60 8.72 6.42 -12.59 -0.08 8.64 16 10 O -0.52 -9.15 16.57 5.25 0.09 -9.07 16 11 N -0.60 -7.99 3.01 -173.35 -0.52 -8.51 16 12 C 0.08 0.88 6.54 -3.32 -0.02 0.86 16 13 C 0.05 0.55 7.00 37.53 0.26 0.81 16 14 O -0.36 -5.89 10.33 -35.23 -0.36 -6.25 16 15 C 0.07 1.13 2.81 -26.58 -0.07 1.06 16 16 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 17 C 0.17 3.30 5.93 -4.04 -0.02 3.28 16 18 N -0.75 -18.42 5.36 -59.90 -0.32 -18.74 16 19 C -0.24 -7.03 10.47 -15.06 -0.16 -7.19 16 20 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -29.82 13.97 55.49 0.78 -29.05 16 23 Si 0.88 22.53 27.73 -169.99 -4.71 17.81 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 26 H -0.27 -6.67 6.52 56.52 0.37 -6.30 16 27 C 0.09 1.22 5.94 -3.54 -0.02 1.20 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 1.02 7.17 -51.93 -0.37 0.65 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.34 7.85 -51.93 -0.41 -0.07 16 35 H 0.21 0.71 8.06 -52.48 -0.42 0.29 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.80 6.48 -51.93 -0.34 0.47 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.36 8.83 5.53 -40.82 -0.23 8.61 16 43 H 0.26 7.85 8.31 -40.82 -0.34 7.52 16 44 H 0.11 1.55 7.06 -51.93 -0.37 1.19 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -36.26 380.75 -8.42 -44.68 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.80 Total: 4.36 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 0.24 Total: 5.12 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.20 Total: -61.24 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.28 Total: -15.32 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.41 Total: -1.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.26 -8.42 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755012924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.539 kcal (2) G-P(sol) polarization free energy of solvation -36.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 51.33 seconds