Wall clock time and date at job start Tue Mar 31 2020 22:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47276 * 2 1 4 4 C 1.50696 * 109.46887 * 120.00194 * 2 1 3 5 5 S 1.70945 * 125.59019 * 295.09321 * 4 2 1 6 6 C 1.70763 * 91.12921 * 179.97438 * 5 4 2 7 7 N 1.28648 * 110.56440 * 359.97438 * 6 5 4 8 8 C 1.33560 * 115.76243 * 0.02562 * 7 6 5 9 9 C 1.47268 * 123.13825 * 179.97438 * 8 7 6 10 10 O 1.21632 * 119.99948 * 255.58923 * 9 8 7 11 11 N 1.34778 * 119.99953 * 75.58486 * 9 8 7 12 12 C 1.47147 * 120.98232 * 4.79048 * 11 9 8 13 13 C 1.53717 * 108.16171 * 129.43127 * 12 11 9 14 14 O 1.42961 * 109.14761 * 52.53508 * 13 12 11 15 15 C 1.42960 * 114.16627 * 297.29001 * 14 13 12 16 16 H 1.09005 * 109.55536 * 302.63242 * 15 14 13 17 17 C 1.52999 * 109.51177 * 182.50651 * 15 14 13 18 18 N 1.46507 * 109.47264 * 65.25293 * 17 15 14 19 19 C 1.36940 * 119.99853 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00121 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99706 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99823 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99968 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46824 * 90.00348 * 23 21 19 25 25 H 1.48498 * 109.46957 * 209.99683 * 23 21 19 26 26 H 1.48498 * 109.47101 * 330.00043 * 23 21 19 27 27 C 1.47150 * 120.97969 * 185.06611 * 11 9 8 28 28 H 1.08996 * 109.47582 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46974 * 300.00167 * 1 2 3 30 30 H 1.08999 * 109.46841 * 59.99945 * 1 2 3 31 31 H 1.09003 * 109.46974 * 239.99833 * 2 1 3 32 32 H 1.09005 * 109.47270 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47563 * 300.00214 * 3 2 1 34 34 H 1.09003 * 109.47255 * 60.00005 * 3 2 1 35 35 H 1.08005 * 124.71688 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.67892 * 249.20565 * 12 11 9 37 37 H 1.08991 * 109.68565 * 9.76038 * 12 11 9 38 38 H 1.09004 * 109.65579 * 292.56936 * 13 12 11 39 39 H 1.09001 * 109.43862 * 172.37215 * 13 12 11 40 40 H 1.09007 * 109.47350 * 185.25048 * 17 15 14 41 41 H 1.09000 * 109.47185 * 305.25459 * 17 15 14 42 42 H 0.96991 * 119.99653 * 0.02562 * 18 17 15 43 43 H 0.97005 * 119.99983 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.68476 * 350.24138 * 27 11 9 45 45 H 1.09004 * 109.67970 * 110.75419 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 16 1.8080 -0.1875 2.8424 6 6 2.6630 -1.5412 3.4362 7 7 3.0587 -2.2870 2.4656 8 6 2.7333 -1.8665 1.2404 9 6 3.1038 -2.5940 0.0147 10 8 4.0089 -2.1831 -0.6863 11 7 2.4401 -3.7152 -0.3302 12 6 1.2756 -4.1743 0.4434 13 6 0.1238 -4.4431 -0.5385 14 8 0.5833 -5.3171 -1.5723 15 6 1.6365 -4.7744 -2.3724 16 1 1.3086 -3.8358 -2.8193 17 6 2.0016 -5.7668 -3.4781 18 7 0.8669 -5.9185 -4.3924 19 6 0.9614 -6.7624 -5.4667 20 1 1.8725 -7.3157 -5.6403 21 6 -0.1139 -6.9065 -6.3327 22 7 -0.0229 -7.7171 -7.3656 23 14 -1.6900 -5.9499 -6.0320 24 1 -1.6182 -4.6440 -6.7353 25 1 -2.8462 -6.7265 -6.5470 26 1 -1.8584 -5.7189 -4.5748 27 6 2.8622 -4.5196 -1.4878 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.8461 -1.7430 4.4813 36 1 1.5277 -5.0905 0.9774 37 1 0.9804 -3.4034 1.1551 38 1 -0.2101 -3.5031 -0.9781 39 1 -0.7043 -4.9117 -0.0068 40 1 2.8653 -5.3950 -4.0295 41 1 2.2423 -6.7329 -3.0343 42 1 0.0489 -5.4213 -4.2366 43 1 -0.7745 -7.8182 -7.9705 44 1 3.6184 -3.9773 -2.0555 45 1 3.2720 -5.4697 -1.1448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755012924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:37 Heat of formation + Delta-G solvation = -43.913965 kcal Electronic energy + Delta-G solvation = -27970.030148 eV Core-core repulsion = 24113.968981 eV Total energy + Delta-G solvation = -3856.061167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 29.90 seconds Orbital eigenvalues (eV) -42.06987 -40.55920 -39.27996 -36.89083 -36.84734 -35.88361 -34.06003 -32.42152 -31.04119 -29.50097 -28.16984 -27.88214 -26.46780 -24.85255 -24.32554 -23.07761 -22.59692 -22.03549 -20.01807 -19.74378 -19.01911 -18.28188 -17.96638 -17.44503 -16.99403 -16.44036 -16.35503 -16.15657 -15.72742 -15.53183 -15.39691 -15.25715 -14.85403 -14.78829 -14.58449 -14.43744 -14.12302 -14.09119 -13.78180 -13.27547 -13.17868 -13.10486 -12.87615 -12.70882 -12.53850 -12.41046 -12.29617 -12.08243 -11.99305 -11.86482 -11.74286 -11.35762 -11.22769 -11.02344 -10.80115 -10.45119 -9.93992 -9.79974 -9.33372 -8.03622 -5.37690 -0.43613 0.24562 0.59012 1.08867 1.37184 1.40829 1.44208 1.49174 1.74136 2.48321 2.62430 3.06195 3.27939 3.32385 3.40128 3.71940 3.76412 3.78268 3.87159 3.93088 4.03123 4.04374 4.16083 4.21471 4.24093 4.39262 4.40537 4.56248 4.62941 4.66022 4.72606 4.78261 4.82949 4.84838 4.88115 5.00919 5.02636 5.10916 5.18874 5.23859 5.72710 6.00648 6.10205 6.19910 6.44197 6.74566 7.05395 7.79944 8.00550 9.17766 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.002888 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.549888 B = 9691.431792 C =10169.875640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 C -0.143 4.143 4 C -0.216 4.216 5 S 0.291 5.709 6 C -0.005 4.005 7 N -0.471 5.471 8 C -0.008 4.008 9 C 0.600 3.400 10 O -0.567 6.567 11 N -0.599 5.599 12 C 0.086 3.914 13 C 0.043 3.957 14 O -0.384 6.384 15 C 0.086 3.914 16 H 0.061 0.939 17 C 0.163 3.837 18 N -0.753 5.753 19 C -0.237 4.237 20 H 0.059 0.941 21 C -0.063 4.063 22 N -0.983 5.983 23 Si 0.956 3.044 24 H -0.276 1.276 25 H -0.292 1.292 26 H -0.253 1.253 27 C 0.092 3.908 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.240 0.760 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.367 0.633 43 H 0.259 0.741 44 H 0.096 0.904 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 21.767 29.732 36.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 C -0.201 4.201 4 C -0.340 4.340 5 S 0.548 5.452 6 C -0.303 4.303 7 N -0.186 5.186 8 C -0.143 4.143 9 C 0.386 3.614 10 O -0.445 6.445 11 N -0.331 5.331 12 C -0.036 4.036 13 C -0.034 4.034 14 O -0.303 6.303 15 C 0.028 3.972 16 H 0.079 0.921 17 C 0.037 3.963 18 N -0.399 5.399 19 C -0.368 4.368 20 H 0.077 0.923 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.783 3.217 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.178 1.178 27 C -0.031 4.031 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.256 0.744 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.200 0.800 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.533 21.966 29.855 37.069 hybrid contribution -0.060 -0.496 -1.281 1.375 sum -0.593 21.471 28.574 35.746 Atomic orbital electron populations 1.21928 0.91453 1.02677 1.03970 1.19758 0.97535 0.96445 0.91309 1.21912 1.00952 0.93248 1.03961 1.25770 1.04669 0.99279 1.04250 1.82458 1.47710 1.23426 0.91626 1.29033 1.01052 0.95755 1.04475 1.66993 1.21619 1.32316 0.97644 1.19819 1.05558 0.96759 0.92191 1.17594 0.80707 0.79337 0.83803 1.90799 1.31842 1.67499 1.54367 1.48091 1.31267 1.23885 1.29895 1.22594 0.84909 1.01824 0.94322 1.23301 0.96276 0.95324 0.88544 1.88098 1.53181 1.42959 1.46022 1.22504 0.87452 0.96699 0.90591 0.92097 1.20730 0.90395 0.96703 0.88503 1.42545 1.14661 1.53234 1.29425 1.19046 0.99666 1.17099 1.00959 0.92312 1.25509 1.01823 1.00959 0.97148 1.69884 1.32884 1.42736 1.17846 0.85390 0.79358 0.78233 0.78764 1.20255 1.21900 1.17792 1.22209 0.97251 0.96438 0.87182 0.92662 0.90189 0.90729 0.92285 0.93436 0.90479 0.90242 0.74398 0.89425 0.88027 0.92298 0.84976 0.93168 0.94655 0.79954 0.93228 0.88546 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.16 71.98 0.66 -1.00 16 2 C -0.03 -0.48 3.19 -11.54 -0.04 -0.52 16 3 C -0.14 -1.86 9.05 71.98 0.65 -1.21 16 4 C -0.22 -3.67 5.03 24.99 0.13 -3.55 16 5 S 0.29 2.46 22.45 -56.49 -1.27 1.19 16 6 C -0.01 -0.06 12.17 130.71 1.59 1.53 16 7 N -0.47 -9.65 10.68 -193.03 -2.06 -11.72 16 8 C -0.01 -0.18 4.48 40.56 0.18 0.00 16 9 C 0.60 17.62 6.42 86.62 0.56 18.18 16 10 O -0.57 -20.85 16.57 -4.13 -0.07 -20.92 16 11 N -0.60 -15.85 3.01 -820.60 -2.47 -18.32 16 12 C 0.09 1.74 6.54 86.50 0.57 2.30 16 13 C 0.04 0.91 7.00 72.22 0.51 1.42 16 14 O -0.38 -12.07 10.33 -148.98 -1.54 -13.61 16 15 C 0.09 2.78 2.81 30.69 0.09 2.87 16 16 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 17 C 0.16 6.50 5.93 86.38 0.51 7.02 16 18 N -0.75 -36.97 5.36 -343.43 -1.84 -38.81 16 19 C -0.24 -14.01 10.47 84.03 0.88 -13.13 16 20 H 0.06 3.77 8.06 -2.91 -0.02 3.75 16 21 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.98 -64.29 13.97 21.65 0.30 -63.99 16 23 Si 0.96 46.57 27.73 68.60 1.90 48.48 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.25 -11.34 6.52 99.48 0.65 -10.69 16 27 C 0.09 2.66 5.94 86.35 0.51 3.17 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 1.35 7.17 -2.39 -0.02 1.34 16 32 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.68 7.85 -2.39 -0.02 0.66 16 35 H 0.24 0.64 8.06 -2.91 -0.02 0.61 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 1.73 6.48 -2.39 -0.02 1.71 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.37 17.39 5.53 -92.71 -0.51 16.88 16 43 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 44 H 0.10 2.96 7.06 -2.39 -0.02 2.94 16 45 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -81.56 380.75 0.64 -80.91 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.43 Total: 23.03 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 7.26 Total: 13.75 kcal Atomic # 7 Polarization: -126.77 SS G_CDS: -6.07 Total: -132.84 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.61 Total: -34.52 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.48 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.27 Total: 1.19 kcal Total: -81.56 0.64 -80.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755012924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.000 kcal (2) G-P(sol) polarization free energy of solvation -81.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.90 seconds