Wall clock time and date at job start Wed Apr 1 2020 01:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 H 1.09000 * 109.46662 * 55.00238 * 3 2 1 5 5 C 1.52996 * 109.47336 * 174.99994 * 3 2 1 6 6 N 1.46498 * 109.47059 * 175.00083 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46850 * 90.00589 * 15 13 11 17 17 H 1.48498 * 109.47329 * 210.00016 * 15 13 11 18 18 H 1.48499 * 109.47220 * 330.01003 * 15 13 11 19 19 N 1.46494 * 109.47171 * 295.00630 * 3 2 1 20 20 C 1.34779 * 120.00531 * 84.99693 * 19 3 2 21 21 O 1.21277 * 119.99526 * 0.02562 * 20 19 3 22 22 C 1.50699 * 120.00383 * 179.97438 * 20 19 3 23 23 C 1.50695 * 109.47352 * 180.02562 * 22 20 19 24 24 C 1.34857 * 125.88870 * 274.69213 * 23 22 20 25 25 C 1.40895 * 107.41422 * 179.88709 * 24 23 22 26 26 C 1.34850 * 107.41566 * 0.37405 * 25 24 23 27 27 N 1.36341 * 125.89049 * 95.00151 * 23 22 20 28 28 H 0.96996 * 125.64121 * 359.95206 * 27 23 22 29 29 H 1.09004 * 109.46917 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47199 * 299.99158 * 1 2 3 31 31 H 1.08995 * 109.47432 * 60.00127 * 1 2 3 32 32 H 1.08997 * 109.47199 * 240.00842 * 2 1 3 33 33 H 1.08995 * 109.47432 * 119.99873 * 2 1 3 34 34 H 1.09004 * 109.47066 * 55.00351 * 5 3 2 35 35 H 1.08994 * 109.46974 * 295.00498 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 40 40 H 0.97009 * 119.99912 * 264.99313 * 19 3 2 41 41 H 1.09001 * 109.46793 * 300.00372 * 22 20 19 42 42 H 1.09005 * 109.46880 * 59.99506 * 22 20 19 43 43 H 1.07995 * 126.29256 * 0.02562 * 24 23 22 44 44 H 1.07998 * 126.28834 * 180.13129 * 25 24 23 45 45 H 1.08000 * 125.88816 * 179.73444 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4445 0.1257 6 7 4.0629 2.8170 0.0060 7 6 5.3850 3.0639 0.0919 8 8 6.1629 2.1493 0.2633 9 6 5.8970 4.4764 -0.0250 10 16 7.7004 4.4794 0.1295 11 6 8.0192 6.2039 -0.0403 12 1 7.2004 6.8924 -0.1889 13 6 9.3225 6.6778 0.0180 14 7 10.3204 5.8387 0.1996 15 14 9.6606 8.5060 -0.1628 16 1 9.6305 9.1496 1.1752 17 1 10.9980 8.7037 -0.7770 18 1 8.6221 9.1181 -1.0299 19 7 1.6523 2.0976 -1.2517 20 6 0.4349 2.6644 -1.3668 21 8 -0.3394 2.6327 -0.4339 22 6 0.0364 3.3387 -2.6543 23 6 -1.3611 3.8870 -2.5225 24 6 -2.5026 3.2020 -2.7377 25 6 -3.5750 4.0850 -2.5022 26 6 -3.0478 5.2781 -2.1601 27 7 -1.6893 5.1628 -2.1709 28 1 -1.0604 5.8712 -1.9625 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.9954 0.8313 -0.6660 35 1 3.8498 1.0378 1.0959 36 1 3.4408 3.5485 -0.1308 37 1 5.6151 4.8859 -0.9950 38 1 5.4631 5.0869 0.7670 39 1 11.2311 6.1699 0.2400 40 1 2.2718 2.1233 -1.9977 41 1 0.7278 4.1542 -2.8664 42 1 0.0678 2.6147 -3.4685 43 1 -2.5805 2.1664 -3.0339 44 1 -4.6260 3.8505 -2.5846 45 1 -3.6055 6.1711 -1.9196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759301201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:18 Heat of formation + Delta-G solvation = -37.956646 kcal Electronic energy + Delta-G solvation = -26214.471119 eV Core-core repulsion = 22358.668280 eV Total energy + Delta-G solvation = -3855.802838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43818 -40.24651 -39.10438 -36.69254 -33.85593 -33.11440 -32.47338 -31.72410 -31.12951 -30.11397 -28.04026 -26.66112 -25.52862 -23.48750 -21.94311 -20.92433 -20.76577 -20.36300 -20.28544 -18.12605 -17.75687 -17.43274 -16.71784 -16.32804 -15.97202 -15.65129 -15.11726 -14.84673 -14.57423 -14.28510 -13.97649 -13.95397 -13.74159 -13.52944 -13.51101 -13.34994 -12.99571 -12.78206 -12.64494 -12.48812 -12.34884 -11.90243 -11.82763 -11.75614 -11.38280 -11.10460 -11.08621 -11.06998 -10.80387 -10.13039 -9.86787 -9.53288 -9.32915 -9.11925 -9.04612 -9.01108 -8.29331 -8.26634 -6.55304 -6.26205 -3.97196 1.94631 2.33702 2.69088 2.91561 2.98184 3.02324 3.15380 3.18743 3.24540 3.28013 3.63739 4.15853 4.30046 4.36287 4.64288 4.66895 4.75515 4.82561 4.97907 5.04137 5.07133 5.08998 5.13999 5.26505 5.28820 5.46611 5.49359 5.52374 5.59970 5.74467 5.76796 5.81384 5.87573 6.00772 6.06321 6.08897 6.15132 6.22311 6.48281 6.76057 6.90051 7.14569 7.35385 7.54691 7.58693 7.93094 8.30427 8.51204 9.19126 10.81184 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.002265 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.154496 B =12358.380723 C =14394.427870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.136 3.864 4 H 0.095 0.905 5 C 0.113 3.887 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.515 6.515 9 C -0.153 4.153 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.728 5.728 20 C 0.512 3.488 21 O -0.518 6.518 22 C -0.074 4.074 23 C 0.032 3.968 24 C -0.180 4.180 25 C -0.202 4.202 26 C -0.011 4.011 27 N -0.552 5.552 28 H 0.412 0.588 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.403 0.597 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.601 -6.150 -6.497 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.031 3.969 4 H 0.113 0.887 5 C -0.012 4.012 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.381 5.381 20 C 0.298 3.702 21 O -0.393 6.393 22 C -0.115 4.115 23 C -0.081 4.081 24 C -0.205 4.205 25 C -0.226 4.226 26 C -0.142 4.142 27 N -0.147 5.147 28 H 0.248 0.752 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.232 0.768 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.238 0.762 41 H 0.118 0.882 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -24.563 -7.630 -5.467 26.296 hybrid contribution -0.402 2.908 -0.603 2.997 sum -24.966 -4.722 -6.070 26.123 Atomic orbital electron populations 1.21777 0.94463 1.00674 1.03088 1.21888 0.97257 0.95077 1.02842 1.21320 0.93506 0.94401 0.87699 0.88699 1.21599 0.91500 0.84659 1.03421 1.45985 1.07828 1.08831 1.76807 1.20325 0.81353 0.91147 0.75393 1.90715 1.55396 1.46183 1.46626 1.23528 1.06935 0.95128 1.04819 1.85411 0.91927 1.10910 1.94989 1.22854 0.95468 0.92351 1.57778 0.90968 1.24999 0.95074 0.98983 0.94540 1.70013 0.99541 1.34559 1.46099 0.86165 0.77830 0.83004 0.78474 1.20254 1.20715 1.19725 1.46112 1.16811 1.58309 1.16899 1.20517 0.81460 0.78499 0.89762 1.90767 1.50580 1.57769 1.40135 1.20141 0.92934 1.01411 0.97005 1.19448 0.94606 0.85394 1.08694 1.20599 0.91343 0.99453 1.09109 1.20863 0.98889 0.93516 1.09370 1.21791 0.82554 1.00530 1.09370 1.41892 1.07387 1.10739 1.54678 0.75192 0.93500 0.92185 0.92430 0.91440 0.90663 0.90874 0.90020 0.76828 0.89308 0.89289 0.92139 0.76248 0.88216 0.86760 0.85125 0.84900 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.51 37.16 0.32 -0.96 16 2 C -0.13 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.14 1.10 2.41 -67.93 -0.16 0.94 16 4 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 5 C 0.11 1.12 5.23 -4.04 -0.02 1.10 16 6 N -0.74 -8.78 5.39 -60.30 -0.32 -9.11 16 7 C 0.53 9.28 7.85 -10.98 -0.09 9.19 16 8 O -0.52 -11.13 15.86 5.55 0.09 -11.04 16 9 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 10 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 11 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -25.79 13.22 55.49 0.73 -25.05 16 15 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 N -0.73 -4.97 4.47 -53.81 -0.24 -5.21 16 20 C 0.51 4.26 6.39 -10.99 -0.07 4.19 16 21 O -0.52 -6.27 13.17 5.56 0.07 -6.19 16 22 C -0.07 -0.46 6.24 -29.04 -0.18 -0.64 16 23 C 0.03 0.27 5.66 -81.79 -0.46 -0.19 16 24 C -0.18 -1.76 10.77 -39.78 -0.43 -2.18 16 25 C -0.20 -1.88 10.86 -39.78 -0.43 -2.31 16 26 C -0.01 -0.09 11.94 -16.75 -0.20 -0.29 16 27 N -0.55 -4.35 6.07 -9.12 -0.06 -4.41 16 28 H 0.41 2.29 8.96 -40.82 -0.37 1.93 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 31 H 0.06 0.57 5.65 -51.93 -0.29 0.28 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.40 3.87 8.14 -40.82 -0.33 3.54 16 37 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.40 2.10 8.60 -40.82 -0.35 1.75 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -36.88 392.60 -9.27 -46.15 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.76 Total: 4.44 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.46 Total: -7.76 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.11 Total: -43.77 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.16 Total: -17.24 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.88 -9.27 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759301201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.189 kcal (2) G-P(sol) polarization free energy of solvation -36.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds