Wall clock time and date at job start Wed Apr 1 2020 00:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.00042 * 2 1 4 4 C 1.54333 * 109.99553 * 238.96269 * 2 1 3 5 5 C 1.55155 * 103.02127 * 218.66833 * 4 2 1 6 6 C 1.54903 * 101.58188 * 35.30500 * 5 4 2 7 7 N 1.47028 * 109.88000 * 121.09441 * 2 1 3 8 8 S 1.65598 * 125.64925 * 298.39538 * 7 2 1 9 9 O 1.42100 * 106.40171 * 156.18020 * 8 7 2 10 10 O 1.42097 * 106.40135 * 23.25577 * 8 7 2 11 11 N 1.65605 * 107.21863 * 269.71795 * 8 7 2 12 12 C 1.46497 * 119.99944 * 270.00140 * 11 8 7 13 13 C 1.50700 * 109.47015 * 265.00210 * 12 11 8 14 14 H 1.08000 * 120.00050 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99841 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99729 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 120.00295 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47062 * 90.00132 * 17 15 13 19 19 H 1.48495 * 109.46971 * 210.00303 * 17 15 13 20 20 H 1.48502 * 109.46869 * 330.00216 * 17 15 13 21 21 C 1.46493 * 120.00041 * 89.99771 * 11 8 7 22 22 C 1.50706 * 109.47190 * 94.99988 * 21 11 8 23 23 C 1.38675 * 120.41529 * 89.99861 * 22 21 11 24 24 C 1.38631 * 118.41792 * 179.97438 * 23 22 21 25 25 C 1.38221 * 119.16077 * 0.25627 * 24 23 22 26 26 N 1.31860 * 120.76509 * 359.49797 * 25 24 23 27 27 C 1.31882 * 121.72556 * 0.49011 * 26 25 24 28 28 H 1.08997 * 109.47442 * 298.90419 * 1 2 3 29 29 H 1.09000 * 109.46603 * 58.90602 * 1 2 3 30 30 H 1.08997 * 109.46880 * 178.90216 * 1 2 3 31 31 H 1.09000 * 110.85017 * 100.19143 * 4 2 1 32 32 H 1.09006 * 110.66642 * 337.04922 * 4 2 1 33 33 H 1.08996 * 110.99869 * 277.22725 * 5 4 2 34 34 H 1.09005 * 111.00170 * 153.38201 * 5 4 2 35 35 H 1.09006 * 110.36770 * 204.15153 * 6 5 4 36 36 H 1.09002 * 110.36966 * 81.83501 * 6 5 4 37 37 H 1.09007 * 109.47136 * 24.99550 * 12 11 8 38 38 H 1.08997 * 109.47436 * 144.99726 * 12 11 8 39 39 H 0.96998 * 119.99441 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.47517 * 335.00074 * 21 11 8 41 41 H 1.08998 * 109.47567 * 214.99924 * 21 11 8 42 42 H 1.07997 * 120.79161 * 0.02562 * 23 22 21 43 43 H 1.08002 * 120.41548 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.62066 * 179.74470 * 25 24 23 45 45 H 1.07993 * 119.62126 * 179.75488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 6 2.8099 -1.8825 0.7369 7 7 2.0300 -0.7141 1.1840 8 16 1.7564 -0.2815 2.7589 9 8 1.9043 -1.4649 3.5315 10 8 0.5723 0.5041 2.7593 11 7 2.9881 0.7289 3.2108 12 6 4.2090 0.1764 3.8026 13 6 4.1034 0.2205 5.3053 14 1 3.2157 0.6205 5.7727 15 6 5.1403 -0.2489 6.0833 16 7 5.0483 -0.2099 7.3947 17 14 6.6760 -0.9401 5.2750 18 1 7.6587 0.1529 5.0633 19 1 7.2724 -1.9790 6.1525 20 1 6.3175 -1.5438 3.9664 21 6 2.8569 2.1753 3.0187 22 6 2.3535 2.8074 4.2908 23 6 3.2459 3.2533 5.2541 24 6 2.7376 3.8288 6.4084 25 6 1.3680 3.9333 6.5620 26 7 0.5491 3.5025 5.6226 27 6 0.9970 2.9503 4.5119 28 1 -0.3634 0.4967 0.8996 29 1 -0.3632 0.5307 -0.8800 30 1 -0.3633 -1.0275 -0.0197 31 1 2.3598 -0.0450 -2.0191 32 1 1.3067 -1.4405 -1.6225 33 1 4.1669 -0.8768 -0.6578 34 1 3.4808 -2.4156 -1.2791 35 1 3.6655 -2.0412 1.3934 36 1 2.1802 -2.7718 0.7115 37 1 4.3353 -0.8564 3.4775 38 1 5.0676 0.7660 3.4813 39 1 5.7777 -0.5405 7.9421 40 1 2.1515 2.3721 2.2114 41 1 3.8287 2.5976 2.7631 42 1 4.3115 3.1553 5.1082 43 1 3.4034 4.1867 7.1798 44 1 0.9639 4.3766 7.4601 45 1 0.2956 2.6056 3.7666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184861436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:09 Heat of formation + Delta-G solvation = -54.982915 kcal Electronic energy + Delta-G solvation = -29361.198372 eV Core-core repulsion = 25504.657219 eV Total energy + Delta-G solvation = -3856.541153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.99873 -39.60099 -38.34684 -37.61976 -36.85885 -34.64247 -33.30504 -32.44461 -32.18058 -31.79407 -29.84530 -26.84835 -26.55327 -24.42966 -23.93535 -22.96944 -22.73369 -21.93864 -19.80908 -19.13479 -18.59016 -18.41944 -17.87467 -17.40193 -16.92852 -16.74398 -16.30628 -16.06441 -15.32143 -14.99416 -14.80296 -14.70061 -14.49844 -14.43752 -14.29319 -14.24856 -13.86331 -13.80765 -13.56933 -13.46872 -13.34659 -13.01629 -12.94419 -12.63242 -12.61091 -12.40608 -12.37125 -12.21432 -12.01409 -11.94238 -11.67694 -11.51423 -11.48369 -10.75017 -10.54019 -10.42471 -10.03675 -9.96026 -9.70153 -8.22075 -6.25572 -0.47277 0.27777 0.51040 1.35564 1.40663 1.48344 2.03912 2.37381 2.55449 2.98911 3.11577 3.24785 3.62208 3.67577 3.79855 3.89322 4.01687 4.09038 4.14976 4.24046 4.25480 4.33918 4.44706 4.55750 4.59832 4.67384 4.71707 4.78458 4.83035 4.84571 4.93352 4.99362 5.03929 5.07614 5.18793 5.23618 5.26559 5.33791 5.48849 5.50558 5.52351 5.54023 5.54391 5.79757 5.91519 6.36756 6.78163 7.09558 7.35534 8.94357 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010001 B = 0.006233 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.090348 B = 4491.350563 C = 6506.293718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.137 3.863 3 H 0.086 0.914 4 C -0.114 4.114 5 C -0.120 4.120 6 C 0.106 3.894 7 N -1.015 6.015 8 S 2.799 3.201 9 O -1.014 7.014 10 O -0.989 6.989 11 N -0.987 5.987 12 C 0.233 3.767 13 C -0.521 4.521 14 H 0.032 0.968 15 C 0.012 3.988 16 N -0.945 5.945 17 Si 0.933 3.067 18 H -0.253 1.253 19 H -0.292 1.292 20 H -0.244 1.244 21 C 0.175 3.825 22 C -0.160 4.160 23 C -0.035 4.035 24 C -0.183 4.183 25 C 0.082 3.918 26 N -0.519 5.519 27 C 0.090 3.910 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.058 0.942 39 H 0.263 0.737 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.176 0.824 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 4.309 -20.390 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.032 3.968 3 H 0.104 0.896 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.019 4.019 7 N -0.857 5.857 8 S 2.810 3.190 9 O -0.998 6.998 10 O -0.973 6.973 11 N -0.825 5.825 12 C 0.109 3.891 13 C -0.560 4.560 14 H 0.050 0.950 15 C -0.186 4.186 16 N -0.585 5.585 17 Si 0.756 3.244 18 H -0.177 1.177 19 H -0.218 1.218 20 H -0.167 1.167 21 C 0.049 3.951 22 C -0.164 4.164 23 C -0.062 4.062 24 C -0.202 4.202 25 C -0.074 4.074 26 N -0.229 5.229 27 C -0.067 4.067 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.193 0.807 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.646 4.085 -19.492 20.090 hybrid contribution 1.678 -0.672 0.832 1.990 sum -0.968 3.413 -18.660 18.994 Atomic orbital electron populations 1.22529 0.95200 1.02563 1.04143 1.21647 0.94034 0.96521 0.84576 0.89632 1.22721 0.97394 0.99702 0.95462 1.22783 0.98386 1.01868 0.92829 1.22209 0.94336 0.87572 0.97781 1.59112 1.66821 1.37797 1.22000 1.01183 0.73067 0.72473 0.72229 1.93557 1.86966 1.49973 1.69339 1.93470 1.45641 1.71229 1.86987 1.57646 1.33948 1.15990 1.74924 1.19274 0.83809 0.94000 0.92049 1.21549 1.02764 1.40380 0.91319 0.94952 1.25777 1.02026 0.95660 0.95092 1.70080 1.34063 1.48632 1.05750 0.85937 0.79633 0.79197 0.79617 1.17729 1.21835 1.16704 1.20210 1.03614 0.78422 0.92845 1.21399 0.94565 1.00341 1.00074 1.21619 1.00693 0.91448 0.92426 1.22340 0.97229 1.01685 0.98965 1.23124 0.90433 0.96175 0.97707 1.67652 1.40957 1.11644 1.02618 1.23019 0.94252 0.94558 0.94896 0.92029 0.88894 0.92892 0.87676 0.89778 0.89945 0.87943 0.92185 0.91518 0.95442 0.92424 0.92769 0.87570 0.87007 0.84580 0.83533 0.80723 0.82119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.84 9.09 71.98 0.65 -3.18 16 2 C 0.14 2.69 3.67 45.34 0.17 2.85 16 3 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.11 -1.43 6.48 31.79 0.21 -1.22 16 5 C -0.12 -1.71 7.09 31.98 0.23 -1.49 16 6 C 0.11 2.52 6.98 86.85 0.61 3.12 16 7 N -1.02 -27.92 3.46 -484.25 -1.67 -29.59 16 8 S 2.80 107.94 6.22 -56.49 -0.35 107.59 16 9 O -1.01 -50.09 16.69 -128.00 -2.14 -52.23 16 10 O -0.99 -38.47 12.42 -128.00 -1.59 -40.06 16 11 N -0.99 -37.11 2.84 -523.92 -1.49 -38.60 16 12 C 0.23 10.11 4.19 85.63 0.36 10.47 16 13 C -0.52 -28.59 8.61 25.60 0.22 -28.37 16 14 H 0.03 2.05 7.08 -2.91 -0.02 2.03 16 15 C 0.01 0.69 5.47 84.65 0.46 1.15 16 16 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 17 Si 0.93 41.37 27.47 68.60 1.88 43.25 16 18 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 21 C 0.17 5.36 5.52 85.64 0.47 5.83 16 22 C -0.16 -5.88 4.83 -19.77 -0.10 -5.98 16 23 C -0.04 -1.32 8.21 22.47 0.18 -1.13 16 24 C -0.18 -6.50 10.11 22.36 0.23 -6.27 16 25 C 0.08 2.93 11.18 84.68 0.95 3.87 16 26 N -0.52 -20.68 10.36 -195.85 -2.03 -22.71 16 27 C 0.09 3.50 10.46 84.67 0.89 4.38 16 28 H 0.06 1.65 5.72 -2.39 -0.01 1.63 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.94 7.84 -2.38 -0.02 0.92 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 1.23 6.67 -2.38 -0.02 1.22 16 38 H 0.06 2.18 7.43 -2.39 -0.02 2.16 16 39 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.11 2.61 7.56 -2.38 -0.02 2.59 16 41 H 0.11 2.77 7.96 -2.39 -0.02 2.75 16 42 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.18 4.94 8.06 -2.91 -0.02 4.92 16 45 H 0.16 6.08 6.63 -2.91 -0.02 6.07 16 Total: -1.00 -78.77 370.56 -0.64 -79.41 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.93 Total: 26.69 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 5.52 Total: -15.96 kcal Atomic # 7 Polarization: -143.81 SS G_CDS: -4.89 Total: -148.70 kcal Atomic # 8 Polarization: -88.56 SS G_CDS: -3.73 Total: -92.29 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.25 kcal Atomic # 16 Polarization: 107.94 SS G_CDS: -0.35 Total: 107.59 kcal Total: -78.77 -0.64 -79.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184861436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.427 kcal (2) G-P(sol) polarization free energy of solvation -78.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds