Wall clock time and date at job start Wed Apr 1 2020 00:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.00004 * 2 1 4 4 C 1.54325 * 109.88159 * 238.90381 * 2 1 3 5 5 C 1.55156 * 102.94086 * 262.77594 * 4 2 1 6 6 C 1.55133 * 101.48542 * 324.33003 * 5 4 2 7 7 N 1.47021 * 109.88432 * 121.09466 * 2 1 3 8 8 S 1.65602 * 125.64577 * 300.44236 * 7 2 1 9 9 O 1.42107 * 106.40026 * 160.71096 * 8 7 2 10 10 O 1.42097 * 106.40627 * 27.78968 * 8 7 2 11 11 N 1.65601 * 107.21723 * 274.24601 * 8 7 2 12 12 C 1.46499 * 120.00155 * 275.35228 * 11 8 7 13 13 C 1.50696 * 109.47473 * 265.68257 * 12 11 8 14 14 H 1.08005 * 119.99770 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00489 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00313 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99838 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47204 * 89.99708 * 17 15 13 19 19 H 1.48498 * 109.47317 * 210.00004 * 17 15 13 20 20 H 1.48506 * 109.47064 * 329.99498 * 17 15 13 21 21 C 1.46499 * 119.99850 * 95.35139 * 11 8 7 22 22 C 1.50701 * 109.47043 * 95.00265 * 21 11 8 23 23 C 1.38227 * 119.61917 * 94.72756 * 22 21 11 24 24 C 1.38627 * 119.15884 * 179.70830 * 23 22 21 25 25 C 1.38675 * 118.42353 * 0.55571 * 24 23 22 26 26 C 1.38185 * 119.15941 * 359.72742 * 25 24 23 27 27 N 1.31859 * 119.61905 * 275.00041 * 22 21 11 28 28 H 1.09006 * 109.46957 * 305.82888 * 1 2 3 29 29 H 1.08998 * 109.47234 * 65.82830 * 1 2 3 30 30 H 1.08997 * 109.47173 * 185.82836 * 1 2 3 31 31 H 1.09004 * 110.71876 * 21.13462 * 4 2 1 32 32 H 1.08993 * 110.72060 * 144.41192 * 4 2 1 33 33 H 1.09003 * 111.00492 * 82.57152 * 5 4 2 34 34 H 1.08995 * 111.00244 * 206.38487 * 5 4 2 35 35 H 1.08994 * 110.50027 * 278.45550 * 6 5 4 36 36 H 1.09003 * 110.33949 * 156.05518 * 6 5 4 37 37 H 1.09000 * 109.47235 * 25.68590 * 12 11 8 38 38 H 1.09001 * 109.47167 * 145.68220 * 12 11 8 39 39 H 0.97000 * 120.00271 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.47091 * 335.00123 * 21 11 8 41 41 H 1.09000 * 109.46975 * 215.00235 * 21 11 8 42 42 H 1.08000 * 120.41796 * 359.97438 * 23 22 21 43 43 H 1.08004 * 120.79075 * 180.29902 * 24 23 22 44 44 H 1.07994 * 120.42107 * 179.75403 * 25 24 23 45 45 H 1.07995 * 119.61367 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2427 5 6 2.3518 -2.1695 -0.6924 6 6 2.8613 -1.8465 0.7369 7 7 2.0300 -0.7140 1.1839 8 16 1.7171 -0.3090 2.7588 9 8 1.9891 -1.4691 3.5331 10 8 0.4579 0.3494 2.7613 11 7 2.8385 0.8247 3.2055 12 6 4.1566 0.4020 3.6853 13 6 4.1425 0.3252 5.1902 14 1 3.2419 0.5675 5.7349 15 6 5.2793 -0.0544 5.8718 16 7 5.2672 -0.1210 7.1852 17 14 6.8372 -0.4728 4.9298 18 1 7.6535 0.7550 4.7527 19 1 7.6189 -1.4817 5.6889 20 1 6.4777 -1.0245 3.5987 21 6 2.5124 2.2505 3.1209 22 6 2.0198 2.7335 4.4607 23 6 2.9070 3.3188 5.3443 24 6 2.4424 3.7652 6.5717 25 6 1.0989 3.5950 6.8706 26 6 0.2727 2.9954 5.9392 27 7 0.7484 2.5880 4.7786 28 1 -0.3633 0.6016 0.8332 29 1 -0.3633 0.4208 -0.9375 30 1 -0.3633 -1.0223 0.1044 31 1 1.2917 -0.7891 -2.0201 32 1 2.9656 -0.2832 -1.6182 33 1 1.4451 -2.7736 -0.6603 34 1 3.1264 -2.6621 -1.2800 35 1 3.9123 -1.5588 0.7115 36 1 2.7177 -2.7048 1.3933 37 1 4.3958 -0.5785 3.2736 38 1 4.9083 1.1235 3.3653 39 1 6.0671 -0.3877 7.6648 40 1 1.7351 2.4016 2.3719 41 1 3.4036 2.8108 2.8378 42 1 3.9482 3.4308 5.0801 43 1 3.1116 4.2308 7.2802 44 1 0.7033 3.9272 7.8189 45 1 -0.7748 2.8596 6.1641 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184969514.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:02 Heat of formation + Delta-G solvation = -52.147494 kcal Electronic energy + Delta-G solvation = -29326.529940 eV Core-core repulsion = 25470.111741 eV Total energy + Delta-G solvation = -3856.418200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.97448 -39.62870 -38.25187 -37.47572 -36.76519 -34.59789 -33.25088 -32.48382 -32.07181 -31.78148 -29.93336 -27.03677 -26.57061 -24.37251 -23.90543 -23.12556 -22.77882 -21.72845 -19.80404 -19.12591 -18.61116 -18.35436 -17.63382 -17.28766 -16.88255 -16.57002 -16.39322 -16.14842 -15.51816 -15.10680 -14.85718 -14.67682 -14.45388 -14.36103 -14.15711 -14.08708 -13.91860 -13.67058 -13.44780 -13.32909 -13.30877 -12.95504 -12.94271 -12.87837 -12.66055 -12.37417 -12.30154 -12.17386 -12.04433 -11.90944 -11.66393 -11.50843 -11.37858 -10.73091 -10.64772 -10.36156 -10.03193 -9.90878 -9.67966 -8.21997 -6.25330 -0.41629 0.32449 0.52896 1.35860 1.40716 1.48874 2.06415 2.37684 2.60484 3.02310 3.11411 3.31918 3.48441 3.66631 3.85985 3.88875 4.03221 4.10211 4.14394 4.30354 4.34826 4.39521 4.44260 4.56044 4.57801 4.63933 4.67806 4.80554 4.83191 4.85943 4.96014 4.97363 5.00872 5.07209 5.19536 5.21196 5.32580 5.36862 5.37956 5.41661 5.51909 5.51998 5.59082 5.82562 5.92690 6.37346 6.77063 7.21006 7.35309 8.94953 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010192 B = 0.006136 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.507907 B = 4561.882479 C = 6550.078681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.136 3.864 3 H 0.082 0.918 4 C -0.113 4.113 5 C -0.119 4.119 6 C 0.100 3.900 7 N -1.016 6.016 8 S 2.795 3.205 9 O -1.018 7.018 10 O -0.975 6.975 11 N -0.985 5.985 12 C 0.233 3.767 13 C -0.518 4.518 14 H 0.026 0.974 15 C 0.011 3.989 16 N -0.946 5.946 17 Si 0.935 3.065 18 H -0.252 1.252 19 H -0.291 1.291 20 H -0.243 1.243 21 C 0.180 3.820 22 C 0.091 3.909 23 C -0.135 4.135 24 C -0.092 4.092 25 C -0.172 4.172 26 C 0.066 3.934 27 N -0.494 5.494 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.059 0.941 39 H 0.264 0.736 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.148 0.852 44 H 0.161 0.839 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 5.449 -17.767 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.100 0.900 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.025 4.025 7 N -0.858 5.858 8 S 2.807 3.193 9 O -1.002 7.002 10 O -0.959 6.959 11 N -0.824 5.824 12 C 0.108 3.892 13 C -0.557 4.557 14 H 0.045 0.955 15 C -0.187 4.187 16 N -0.587 5.587 17 Si 0.758 3.242 18 H -0.176 1.176 19 H -0.217 1.217 20 H -0.166 1.166 21 C 0.054 3.946 22 C -0.048 4.048 23 C -0.155 4.155 24 C -0.118 4.118 25 C -0.192 4.192 26 C -0.091 4.091 27 N -0.204 5.204 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.166 0.834 44 H 0.178 0.822 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.888 4.687 -17.598 18.856 hybrid contribution 1.440 -0.046 1.497 2.078 sum -3.447 4.640 -16.101 17.108 Atomic orbital electron populations 1.22488 0.95071 1.02372 1.03921 1.21622 0.94178 0.96343 0.84730 0.90012 1.22720 1.02818 0.94324 0.95322 1.22796 1.02341 0.97734 0.92927 1.22326 0.94874 0.87566 0.97689 1.59153 1.64383 1.40320 1.21980 1.01330 0.73174 0.72472 0.72366 1.93545 1.86105 1.51326 1.69184 1.93560 1.39858 1.75832 1.86640 1.57620 1.29322 1.16894 1.78557 1.19287 0.81077 0.95568 0.93231 1.21489 0.97558 1.45023 0.91620 0.95548 1.25798 1.02484 0.94825 0.95564 1.70078 1.30161 1.49860 1.08607 0.85903 0.79146 0.79255 0.79879 1.17642 1.21670 1.16609 1.20191 1.01750 0.80649 0.92013 1.21866 0.89291 0.95055 0.98607 1.22046 1.00718 0.97796 0.94969 1.21859 0.96284 0.97312 0.96304 1.22399 0.94476 1.00768 1.01511 1.23131 1.01387 0.95104 0.89437 1.67552 1.15918 1.16199 1.20694 0.92272 0.88786 0.93231 0.87965 0.88966 0.90797 0.87527 0.90763 0.92359 0.95441 0.92285 0.92756 0.88139 0.86299 0.84548 0.83426 0.82178 0.81293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 8.81 71.98 0.63 -3.52 16 2 C 0.14 3.02 3.73 45.34 0.17 3.18 16 3 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.11 -1.62 6.49 31.78 0.21 -1.41 16 5 C -0.12 -1.98 7.10 32.06 0.23 -1.75 16 6 C 0.10 2.61 7.09 86.93 0.62 3.23 16 7 N -1.02 -30.85 3.47 -483.87 -1.68 -32.53 16 8 S 2.80 117.22 6.22 -56.49 -0.35 116.87 16 9 O -1.02 -53.22 16.60 -128.00 -2.12 -55.34 16 10 O -0.98 -42.29 13.85 -128.00 -1.77 -44.07 16 11 N -0.99 -40.15 2.84 -523.93 -1.49 -41.64 16 12 C 0.23 10.53 4.18 85.63 0.36 10.88 16 13 C -0.52 -29.31 8.84 25.60 0.23 -29.08 16 14 H 0.03 1.73 7.36 -2.91 -0.02 1.71 16 15 C 0.01 0.61 5.47 84.65 0.46 1.08 16 16 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 17 Si 0.94 41.93 27.47 68.60 1.88 43.81 16 18 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 20 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 21 C 0.18 6.23 5.70 85.63 0.49 6.72 16 22 C 0.09 3.62 5.62 42.55 0.24 3.86 16 23 C -0.13 -5.12 8.68 22.36 0.19 -4.92 16 24 C -0.09 -3.17 10.18 22.47 0.23 -2.94 16 25 C -0.17 -5.53 10.11 22.36 0.23 -5.30 16 26 C 0.07 2.38 11.18 84.67 0.95 3.33 16 27 N -0.49 -20.51 10.07 -183.89 -1.85 -22.36 16 28 H 0.06 1.75 6.00 -2.38 -0.01 1.73 16 29 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.04 7.79 -2.39 -0.02 1.02 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.75 7.78 -2.39 -0.02 1.73 16 37 H 0.03 1.27 6.84 -2.39 -0.02 1.25 16 38 H 0.06 2.32 7.42 -2.39 -0.02 2.30 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.10 3.12 7.46 -2.39 -0.02 3.10 16 41 H 0.12 3.25 7.90 -2.39 -0.02 3.23 16 42 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 43 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.17 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -82.90 374.40 -0.94 -83.84 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.92 Total: 26.76 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 5.22 Total: -16.65 kcal Atomic # 7 Polarization: -150.50 SS G_CDS: -4.72 Total: -155.22 kcal Atomic # 8 Polarization: -95.51 SS G_CDS: -3.90 Total: -99.41 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.88 Total: 43.81 kcal Atomic # 16 Polarization: 117.22 SS G_CDS: -0.35 Total: 116.87 kcal Total: -82.90 -0.94 -83.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184969514.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.689 kcal (2) G-P(sol) polarization free energy of solvation -82.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds