Wall clock time and date at job start Wed Apr 1 2020 00:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.99836 * 2 1 4 4 C 1.54318 * 109.88264 * 121.09714 * 2 1 3 5 5 C 1.55160 * 102.94055 * 141.60592 * 4 2 1 6 6 C 1.55122 * 101.48683 * 324.33172 * 5 4 2 7 7 N 1.47021 * 109.87601 * 238.90420 * 2 1 3 8 8 S 1.65603 * 125.65163 * 61.61207 * 7 2 1 9 9 O 1.42105 * 106.39725 * 336.45125 * 8 7 2 10 10 O 1.42094 * 106.40331 * 203.53456 * 8 7 2 11 11 N 1.65605 * 107.21976 * 89.99069 * 8 7 2 12 12 C 1.46497 * 119.99747 * 270.00296 * 11 8 7 13 13 C 1.50707 * 109.47033 * 264.99954 * 12 11 8 14 14 H 1.07996 * 119.99838 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99780 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99989 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99726 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47468 * 59.99890 * 17 15 13 19 19 H 1.48501 * 109.47225 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47186 * 299.99981 * 17 15 13 21 21 C 1.46496 * 119.99781 * 90.00411 * 11 8 7 22 22 C 1.50693 * 109.47123 * 94.99792 * 21 11 8 23 23 C 1.38222 * 119.61973 * 94.99821 * 22 21 11 24 24 C 1.38630 * 119.16715 * 180.02562 * 23 22 21 25 25 C 1.38674 * 118.41731 * 0.02562 * 24 23 22 26 26 C 1.38187 * 119.16260 * 359.97438 * 25 24 23 27 27 N 1.31864 * 119.62173 * 275.29527 * 22 21 11 28 28 H 1.08993 * 109.47217 * 181.09895 * 1 2 3 29 29 H 1.08998 * 109.46576 * 301.09292 * 1 2 3 30 30 H 1.08997 * 109.47139 * 61.09399 * 1 2 3 31 31 H 1.09000 * 110.72231 * 259.97513 * 4 2 1 32 32 H 1.09005 * 110.72245 * 23.06920 * 4 2 1 33 33 H 1.09005 * 110.99976 * 82.57656 * 5 4 2 34 34 H 1.09003 * 111.00553 * 206.38340 * 5 4 2 35 35 H 1.08993 * 110.50118 * 278.45377 * 6 5 4 36 36 H 1.09002 * 110.33979 * 156.05776 * 6 5 4 37 37 H 1.08998 * 109.47749 * 25.00188 * 12 11 8 38 38 H 1.08999 * 109.46768 * 145.00697 * 12 11 8 39 39 H 0.97007 * 119.99612 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.46965 * 334.99604 * 21 11 8 41 41 H 1.09002 * 109.46790 * 214.99802 * 21 11 8 42 42 H 1.08003 * 120.41945 * 0.04909 * 23 22 21 43 43 H 1.07997 * 120.79161 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.41840 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.61408 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 3.2876 -1.5143 0.6922 6 6 2.8099 -1.8826 -0.7369 7 7 2.0299 -0.7141 -1.1840 8 16 1.7564 -0.2815 -2.7589 9 8 0.5686 0.4985 -2.7602 10 8 1.9108 -1.4635 -3.5323 11 7 2.9840 0.7351 -3.2084 12 6 2.8457 2.1807 -3.0152 13 6 2.3410 2.8114 -4.2875 14 1 2.1428 2.1969 -5.1532 15 6 2.1325 4.1731 -4.3463 16 7 2.3734 4.9213 -3.2920 17 14 1.5076 4.9549 -5.9235 18 1 0.1867 4.3742 -6.2744 19 1 1.3672 6.4203 -5.7277 20 1 2.4716 4.6919 -7.0220 21 6 4.2083 0.1888 -3.7991 22 6 4.1043 0.2337 -5.3018 23 6 4.6399 1.3048 -5.9919 24 6 4.5385 1.3368 -7.3741 25 6 3.8987 0.2856 -8.0134 26 6 3.3876 -0.7517 -7.2569 27 7 3.4982 -0.7465 -5.9427 28 1 -0.3633 -1.0274 0.0197 29 1 -0.3632 0.5307 0.8800 30 1 -0.3633 0.4967 -0.8996 31 1 2.3530 -0.0460 2.0200 32 1 1.3040 -1.4437 1.6201 33 1 4.1655 -0.8689 0.6603 34 1 3.4856 -2.4108 1.2798 35 1 2.1801 -2.7717 -0.7116 36 1 3.6655 -2.0412 -1.3933 37 1 2.1383 2.3735 -2.2087 38 1 3.8152 2.6072 -2.7580 39 1 2.2263 5.8793 -3.3332 40 1 4.3389 -0.8436 -3.4746 41 1 5.0636 0.7822 -3.4761 42 1 5.1316 2.1066 -5.4610 43 1 4.9473 2.1612 -7.9395 44 1 3.8011 0.2777 -9.0889 45 1 2.8876 -1.5739 -7.7472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184969528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:07 Heat of formation + Delta-G solvation = -31.800727 kcal Electronic energy + Delta-G solvation = -29315.454516 eV Core-core repulsion = 25459.918619 eV Total energy + Delta-G solvation = -3855.535898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.65002 -38.50551 -36.48107 -35.75051 -34.99185 -32.67519 -31.87212 -31.10457 -30.91472 -30.67527 -27.60475 -25.58096 -25.25574 -23.00813 -22.44133 -21.77651 -21.36069 -20.91799 -18.28472 -17.29123 -16.87201 -16.42677 -16.27719 -15.85778 -15.76134 -15.15623 -14.85728 -14.38803 -13.83451 -13.68701 -13.57807 -13.34009 -13.17091 -13.03009 -12.90415 -12.70733 -12.31260 -12.26054 -12.04130 -11.58138 -11.52125 -11.49942 -11.28546 -11.14245 -11.08670 -11.03583 -10.92708 -10.71900 -10.65873 -10.53026 -10.33975 -10.01873 -9.82192 -9.33100 -8.90729 -8.75345 -8.54967 -8.39144 -8.06990 -6.06694 -4.08483 1.20610 1.65325 1.83826 3.30205 3.34863 3.40481 3.59312 4.11982 4.39848 4.46547 4.56700 4.70508 4.80160 4.95345 5.17031 5.19629 5.26928 5.28741 5.30873 5.47263 5.49212 5.53822 5.58093 5.69548 5.76239 5.77359 5.85073 5.91170 5.92080 5.95876 6.12304 6.17822 6.22940 6.26327 6.34114 6.52794 6.61779 6.69376 6.73416 6.77765 7.18930 7.22024 7.39347 7.59451 7.91387 8.20884 8.56548 8.93284 9.55821 11.01948 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.005619 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.014715 B = 4982.022322 C = 6532.393692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.149 3.851 3 H 0.076 0.924 4 C -0.124 4.124 5 C -0.131 4.131 6 C 0.124 3.876 7 N -1.020 6.020 8 S 2.786 3.214 9 O -0.960 6.960 10 O -0.968 6.968 11 N -0.987 5.987 12 C 0.257 3.743 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.896 5.896 17 Si 0.888 3.112 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.188 3.812 22 C 0.117 3.883 23 C -0.123 4.123 24 C -0.086 4.086 25 C -0.180 4.180 26 C 0.085 3.915 27 N -0.459 5.459 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -10.821 4.525 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.043 3.957 3 H 0.094 0.906 4 C -0.163 4.163 5 C -0.170 4.170 6 C -0.002 4.002 7 N -0.859 5.859 8 S 2.796 3.204 9 O -0.944 6.944 10 O -0.952 6.952 11 N -0.827 5.827 12 C 0.136 3.864 13 C -0.556 4.556 14 H 0.075 0.925 15 C -0.137 4.137 16 N -0.535 5.535 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.060 3.940 22 C -0.023 4.023 23 C -0.143 4.143 24 C -0.113 4.113 25 C -0.200 4.200 26 C -0.072 4.072 27 N -0.168 5.168 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.590 -11.565 4.466 13.220 hybrid contribution 0.143 1.618 -1.319 2.093 sum 4.733 -9.947 3.147 11.456 Atomic orbital electron populations 1.22517 0.95041 1.02232 1.04485 1.21250 0.94174 0.95920 0.84386 0.90575 1.22705 0.97512 0.99320 0.96757 1.22818 0.98167 1.00445 0.95538 1.21897 0.94567 0.88273 0.95416 1.59550 1.66530 1.36660 1.23160 1.01975 0.73847 0.72951 0.71617 1.93575 1.44167 1.70942 1.85689 1.93613 1.86649 1.48031 1.66910 1.57941 1.31370 1.20001 1.73386 1.19072 0.97774 0.72258 0.97334 1.21386 1.43830 0.92247 0.98168 0.92478 1.24850 0.95377 0.97117 0.96339 1.69899 1.49043 1.05807 1.28750 0.86707 0.79829 0.78061 0.83819 1.20163 1.21199 1.20190 1.19828 0.88591 0.98838 0.86755 1.21645 0.93182 0.90232 0.97196 1.21952 0.99741 0.98227 0.94406 1.21496 0.97273 0.97616 0.94867 1.22040 1.01013 0.96113 1.00869 1.22637 0.97198 0.97605 0.89805 1.67606 1.12716 1.26798 1.09659 0.92818 0.91818 0.89071 0.90491 0.90837 0.90580 0.90511 0.91849 0.91125 0.94424 0.94793 0.92744 0.90172 0.89358 0.84535 0.85512 0.85681 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.09 37.16 0.34 -2.42 16 2 C 0.15 2.17 3.67 -66.95 -0.25 1.93 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.12 -1.31 6.47 -24.90 -0.16 -1.47 16 5 C -0.13 -1.29 7.10 -24.47 -0.17 -1.46 16 6 C 0.12 1.57 6.99 -2.41 -0.02 1.56 16 7 N -1.02 -16.49 3.45 -104.30 -0.36 -16.85 16 8 S 2.79 58.12 6.22 -107.50 -0.67 57.45 16 9 O -0.96 -23.51 14.24 -57.17 -0.81 -24.32 16 10 O -0.97 -21.37 16.23 -57.17 -0.93 -22.30 16 11 N -0.99 -20.53 2.84 -116.95 -0.33 -20.87 16 12 C 0.26 6.23 5.12 -5.19 -0.03 6.20 16 13 C -0.52 -14.06 8.27 -34.44 -0.28 -14.34 16 14 H 0.06 1.62 7.03 -52.49 -0.37 1.25 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.19 3.36 5.68 -5.20 -0.03 3.33 16 22 C 0.12 2.27 5.58 -82.59 -0.46 1.81 16 23 C -0.12 -2.22 8.62 -39.44 -0.34 -2.56 16 24 C -0.09 -1.41 10.18 -39.28 -0.40 -1.81 16 25 C -0.18 -2.77 10.11 -39.44 -0.40 -3.17 16 26 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 27 N -0.46 -9.16 9.81 -9.47 -0.09 -9.25 16 28 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.69 5.72 -51.93 -0.30 1.40 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 38 H 0.03 0.82 8.00 -51.93 -0.42 0.40 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.08 1.29 7.61 -51.93 -0.40 0.90 16 41 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 42 H 0.14 2.38 8.06 -52.48 -0.42 1.95 16 43 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -34.27 377.84 -11.18 -45.45 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.90 Total: 2.37 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.49 Total: -9.44 kcal Atomic # 7 Polarization: -71.64 SS G_CDS: -0.05 Total: -71.69 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.74 Total: -46.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 58.12 SS G_CDS: -0.67 Total: 57.45 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.27 -11.18 -45.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184969528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.649 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds