Wall clock time and date at job start Wed Apr 1 2020 00:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.99836 * 2 1 4 4 C 1.54318 * 109.88264 * 121.09714 * 2 1 3 5 5 C 1.55160 * 102.94055 * 141.60592 * 4 2 1 6 6 C 1.55122 * 101.48683 * 324.33172 * 5 4 2 7 7 N 1.47021 * 109.87601 * 238.90420 * 2 1 3 8 8 S 1.65603 * 125.65163 * 61.61207 * 7 2 1 9 9 O 1.42105 * 106.39725 * 336.45125 * 8 7 2 10 10 O 1.42094 * 106.40331 * 203.53456 * 8 7 2 11 11 N 1.65605 * 107.21976 * 89.99069 * 8 7 2 12 12 C 1.46497 * 119.99747 * 270.00296 * 11 8 7 13 13 C 1.50707 * 109.47033 * 264.99954 * 12 11 8 14 14 H 1.07996 * 119.99838 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99780 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99989 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99726 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47468 * 59.99890 * 17 15 13 19 19 H 1.48501 * 109.47225 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47186 * 299.99981 * 17 15 13 21 21 C 1.46496 * 119.99781 * 90.00411 * 11 8 7 22 22 C 1.50693 * 109.47123 * 94.99792 * 21 11 8 23 23 C 1.38222 * 119.61973 * 94.99821 * 22 21 11 24 24 C 1.38630 * 119.16715 * 180.02562 * 23 22 21 25 25 C 1.38674 * 118.41731 * 0.02562 * 24 23 22 26 26 C 1.38187 * 119.16260 * 359.97438 * 25 24 23 27 27 N 1.31864 * 119.62173 * 275.29527 * 22 21 11 28 28 H 1.08993 * 109.47217 * 181.09895 * 1 2 3 29 29 H 1.08998 * 109.46576 * 301.09292 * 1 2 3 30 30 H 1.08997 * 109.47139 * 61.09399 * 1 2 3 31 31 H 1.09000 * 110.72231 * 259.97513 * 4 2 1 32 32 H 1.09005 * 110.72245 * 23.06920 * 4 2 1 33 33 H 1.09005 * 110.99976 * 82.57656 * 5 4 2 34 34 H 1.09003 * 111.00553 * 206.38340 * 5 4 2 35 35 H 1.08993 * 110.50118 * 278.45377 * 6 5 4 36 36 H 1.09002 * 110.33979 * 156.05776 * 6 5 4 37 37 H 1.08998 * 109.47749 * 25.00188 * 12 11 8 38 38 H 1.08999 * 109.46768 * 145.00697 * 12 11 8 39 39 H 0.97007 * 119.99612 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.46965 * 334.99604 * 21 11 8 41 41 H 1.09002 * 109.46790 * 214.99802 * 21 11 8 42 42 H 1.08003 * 120.41945 * 0.04909 * 23 22 21 43 43 H 1.07997 * 120.79161 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.41840 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.61408 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0549 -0.7495 1.2426 5 6 3.2876 -1.5143 0.6922 6 6 2.8099 -1.8826 -0.7369 7 7 2.0299 -0.7141 -1.1840 8 16 1.7564 -0.2815 -2.7589 9 8 0.5686 0.4985 -2.7602 10 8 1.9108 -1.4635 -3.5323 11 7 2.9840 0.7351 -3.2084 12 6 2.8457 2.1807 -3.0152 13 6 2.3410 2.8114 -4.2875 14 1 2.1428 2.1969 -5.1532 15 6 2.1325 4.1731 -4.3463 16 7 2.3734 4.9213 -3.2920 17 14 1.5076 4.9549 -5.9235 18 1 0.1867 4.3742 -6.2744 19 1 1.3672 6.4203 -5.7277 20 1 2.4716 4.6919 -7.0220 21 6 4.2083 0.1888 -3.7991 22 6 4.1043 0.2337 -5.3018 23 6 4.6399 1.3048 -5.9919 24 6 4.5385 1.3368 -7.3741 25 6 3.8987 0.2856 -8.0134 26 6 3.3876 -0.7517 -7.2569 27 7 3.4982 -0.7465 -5.9427 28 1 -0.3633 -1.0274 0.0197 29 1 -0.3632 0.5307 0.8800 30 1 -0.3633 0.4967 -0.8996 31 1 2.3530 -0.0460 2.0200 32 1 1.3040 -1.4437 1.6201 33 1 4.1655 -0.8689 0.6603 34 1 3.4856 -2.4108 1.2798 35 1 2.1801 -2.7717 -0.7116 36 1 3.6655 -2.0412 -1.3933 37 1 2.1383 2.3735 -2.2087 38 1 3.8152 2.6072 -2.7580 39 1 2.2263 5.8793 -3.3332 40 1 4.3389 -0.8436 -3.4746 41 1 5.0636 0.7822 -3.4761 42 1 5.1316 2.1066 -5.4610 43 1 4.9473 2.1612 -7.9395 44 1 3.8011 0.2777 -9.0889 45 1 2.8876 -1.5739 -7.7472 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184969528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:05 Heat of formation + Delta-G solvation = -55.070785 kcal Electronic energy + Delta-G solvation = -29316.463582 eV Core-core repulsion = 25459.918619 eV Total energy + Delta-G solvation = -3856.544963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.98691 -39.58419 -38.21070 -37.40470 -36.73961 -34.66316 -33.24320 -32.37007 -32.19350 -31.76776 -29.42402 -27.02397 -26.52258 -24.52475 -24.15406 -22.94263 -22.69249 -21.94860 -19.77321 -18.89537 -18.46535 -18.26486 -17.63710 -17.26310 -17.05149 -16.67563 -16.35740 -16.10121 -15.34945 -14.96746 -14.81720 -14.58092 -14.52035 -14.45756 -14.17742 -14.07425 -13.91390 -13.71441 -13.47347 -13.24628 -13.19363 -12.92541 -12.84217 -12.63826 -12.62998 -12.50202 -12.38787 -12.33348 -11.98201 -11.87443 -11.80194 -11.53127 -11.50252 -10.67098 -10.58892 -10.34080 -10.01680 -9.90121 -9.67685 -8.18350 -6.25831 -0.36572 0.31596 0.51933 1.33052 1.37447 1.43632 2.09584 2.38869 2.63167 3.03175 3.13879 3.33922 3.48992 3.67438 3.84233 3.91557 4.04609 4.06924 4.13894 4.30143 4.34158 4.40487 4.42692 4.55337 4.61011 4.64785 4.72688 4.81576 4.84601 4.92922 4.96678 5.03478 5.07253 5.17181 5.19060 5.26154 5.31387 5.38667 5.45441 5.46481 5.49018 5.59168 5.72557 5.91814 5.95194 6.14280 6.79157 7.22350 7.40674 8.89259 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.005619 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.014715 B = 4982.022322 C = 6532.393692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 H 0.058 0.942 4 C -0.114 4.114 5 C -0.119 4.119 6 C 0.110 3.890 7 N -1.018 6.018 8 S 2.795 3.205 9 O -1.006 7.006 10 O -0.986 6.986 11 N -0.989 5.989 12 C 0.276 3.724 13 C -0.521 4.521 14 H 0.041 0.959 15 C 0.021 3.979 16 N -0.920 5.920 17 Si 0.936 3.064 18 H -0.289 1.289 19 H -0.277 1.277 20 H -0.258 1.258 21 C 0.181 3.819 22 C 0.093 3.907 23 C -0.139 4.139 24 C -0.093 4.093 25 C -0.170 4.170 26 C 0.068 3.932 27 N -0.493 5.493 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.012 0.988 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.153 0.847 44 H 0.164 0.836 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -11.660 4.626 14.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.031 3.969 3 H 0.076 0.924 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.015 4.015 7 N -0.860 5.860 8 S 2.806 3.194 9 O -0.990 6.990 10 O -0.969 6.969 11 N -0.828 5.828 12 C 0.153 3.847 13 C -0.561 4.561 14 H 0.059 0.941 15 C -0.178 4.178 16 N -0.561 5.561 17 Si 0.762 3.238 18 H -0.215 1.215 19 H -0.202 1.202 20 H -0.183 1.183 21 C 0.055 3.945 22 C -0.046 4.046 23 C -0.159 4.159 24 C -0.119 4.119 25 C -0.190 4.190 26 C -0.089 4.089 27 N -0.203 5.203 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.171 0.829 44 H 0.182 0.818 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.723 -12.419 4.550 14.411 hybrid contribution -0.214 1.798 -1.357 2.263 sum 5.510 -10.621 3.193 12.384 Atomic orbital electron populations 1.22497 0.95621 1.02729 1.03444 1.21504 0.93905 0.95791 0.85651 0.92369 1.22707 0.98080 0.99613 0.94839 1.22831 0.97690 1.01748 0.93519 1.22288 0.94556 0.87152 0.97475 1.59176 1.67019 1.37826 1.21932 1.01351 0.73189 0.72321 0.72517 1.93522 1.46680 1.72016 1.86822 1.93576 1.86767 1.48265 1.68330 1.57783 1.32372 1.18422 1.74237 1.18630 0.96669 0.74143 0.95295 1.21532 1.43615 0.92394 0.98556 0.94103 1.25501 0.95700 0.97663 0.98958 1.69976 1.49906 1.06050 1.30132 0.85940 0.78888 0.77622 0.81333 1.21518 1.20156 1.18269 1.20098 0.87972 0.99860 0.86609 1.21789 0.94218 0.90914 0.97685 1.22074 1.00241 0.97998 0.95597 1.21901 0.96952 0.98666 0.94360 1.22434 0.99086 0.94726 1.02720 1.23180 0.97383 0.99034 0.89296 1.67577 1.13709 1.27692 1.11313 0.91644 0.89440 0.93352 0.88545 0.89134 0.90265 0.87196 0.90934 0.90743 0.96998 0.94789 0.92560 0.88766 0.87241 0.84681 0.82921 0.81805 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.57 9.09 71.99 0.65 -4.92 16 2 C 0.14 3.96 3.67 45.34 0.17 4.13 16 3 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.11 -2.07 6.47 31.78 0.21 -1.86 16 5 C -0.12 -1.96 7.10 32.06 0.23 -1.73 16 6 C 0.11 2.60 6.99 86.93 0.61 3.21 16 7 N -1.02 -32.97 3.45 -483.89 -1.67 -34.64 16 8 S 2.80 120.63 6.22 -56.49 -0.35 120.28 16 9 O -1.01 -52.11 14.24 -128.00 -1.82 -53.94 16 10 O -0.99 -44.53 16.23 -128.00 -2.08 -46.61 16 11 N -0.99 -42.33 2.84 -523.92 -1.49 -43.82 16 12 C 0.28 13.83 5.12 85.64 0.44 14.27 16 13 C -0.52 -29.05 8.27 25.60 0.21 -28.84 16 14 H 0.04 2.38 7.03 -2.91 -0.02 2.36 16 15 C 0.02 1.19 5.46 84.66 0.46 1.65 16 16 N -0.92 -53.03 13.29 21.45 0.28 -52.74 16 17 Si 0.94 44.68 29.54 68.60 2.03 46.70 16 18 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 21 C 0.18 6.55 5.68 85.63 0.49 7.04 16 22 C 0.09 3.62 5.58 42.55 0.24 3.85 16 23 C -0.14 -4.97 8.62 22.36 0.19 -4.78 16 24 C -0.09 -2.86 10.18 22.47 0.23 -2.63 16 25 C -0.17 -4.83 10.11 22.36 0.23 -4.60 16 26 C 0.07 2.25 11.18 84.67 0.95 3.20 16 27 N -0.49 -19.72 9.81 -183.89 -1.80 -21.53 16 28 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.89 5.72 -2.39 -0.01 1.88 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.38 7.84 -2.38 -0.02 1.36 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.01 0.66 7.61 -2.39 -0.02 0.64 16 38 H 0.03 1.69 8.00 -2.39 -0.02 1.67 16 39 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 40 H 0.09 3.06 7.61 -2.38 -0.02 3.04 16 41 H 0.11 3.37 7.90 -2.39 -0.02 3.35 16 42 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 43 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 45 H 0.17 4.55 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -76.85 377.84 -0.64 -77.49 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.97 Total: 20.80 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 5.29 Total: -12.00 kcal Atomic # 7 Polarization: -148.05 SS G_CDS: -4.68 Total: -152.73 kcal Atomic # 8 Polarization: -96.65 SS G_CDS: -3.90 Total: -100.55 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 120.63 SS G_CDS: -0.35 Total: 120.28 kcal Total: -76.85 -0.64 -77.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184969528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.420 kcal (2) G-P(sol) polarization free energy of solvation -76.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds