Wall clock time and date at job start Wed Apr 1 2020 00:19:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 110.89030 * 2 1
4 4 C 1.55163 * 110.99959 * 236.11676 * 2 1 3
5 5 C 1.54328 * 102.94111 * 206.42067 * 4 2 1
6 6 N 1.47024 * 107.26922 * 22.19727 * 5 4 2
7 7 S 1.65603 * 125.64734 * 181.01804 * 6 5 4
8 8 O 1.42103 * 106.40110 * 330.49901 * 7 6 5
9 9 O 1.42101 * 106.40231 * 197.57985 * 7 6 5
10 10 N 1.65597 * 107.21837 * 84.03991 * 7 6 5
11 11 C 1.46500 * 119.99756 * 92.10380 * 10 7 6
12 12 C 1.50698 * 109.47225 * 264.99972 * 11 10 7
13 13 H 1.08003 * 120.00112 * 359.97438 * 12 11 10
14 14 C 1.37877 * 120.00296 * 180.02562 * 12 11 10
15 15 N 1.31513 * 119.99837 * 0.02562 * 14 12 11
16 16 Si 1.86799 * 120.00207 * 179.97438 * 14 12 11
17 17 H 1.48506 * 109.47029 * 90.00453 * 16 14 12
18 18 H 1.48500 * 109.47201 * 209.99829 * 16 14 12
19 19 H 1.48490 * 109.47239 * 330.00358 * 16 14 12
20 20 C 1.46498 * 119.99836 * 272.10745 * 10 7 6
21 21 C 1.50707 * 109.47054 * 263.26141 * 20 10 7
22 22 C 1.38228 * 119.61181 * 95.23207 * 21 20 10
23 23 C 1.38626 * 119.15175 * 179.75415 * 22 21 20
24 24 C 1.38673 * 118.42591 * 0.50954 * 23 22 21
25 25 C 1.38176 * 119.16270 * 359.73165 * 24 23 22
26 26 N 1.31845 * 119.61866 * 275.50593 * 21 20 10
27 27 C 1.47420 * 108.70480 * 1.28589 * 6 5 4
28 28 H 1.08993 * 109.46844 * 182.43030 * 1 2 3
29 29 H 1.09000 * 109.46724 * 302.42555 * 1 2 3
30 30 H 1.08989 * 109.47077 * 62.42420 * 1 2 3
31 31 H 1.09005 * 110.71812 * 88.06693 * 4 2 1
32 32 H 1.08995 * 110.87843 * 324.86025 * 4 2 1
33 33 H 1.08993 * 109.88578 * 262.77967 * 5 4 2
34 34 H 1.09000 * 109.87809 * 141.60915 * 5 4 2
35 35 H 1.09000 * 109.47525 * 25.00420 * 11 10 7
36 36 H 1.09004 * 109.47043 * 145.00392 * 11 10 7
37 37 H 0.96997 * 120.00105 * 180.02562 * 15 14 12
38 38 H 1.08992 * 109.47512 * 23.26882 * 20 10 7
39 39 H 1.09009 * 109.47074 * 143.26616 * 20 10 7
40 40 H 1.07994 * 120.42289 * 359.97438 * 22 21 20
41 41 H 1.08010 * 120.78323 * 180.21384 * 23 22 21
42 42 H 1.07997 * 120.41989 * 179.70815 * 24 23 22
43 43 H 1.08003 * 119.62076 * 179.97438 * 25 24 23
44 44 H 1.09004 * 110.37115 * 94.48333 * 27 6 5
45 45 H 1.09004 * 110.37041 * 216.80692 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9187 1.0183 0.0000
4 6 2.0861 -0.8076 -1.2026
5 6 3.4675 -1.2740 -0.6966
6 7 3.4272 -1.2434 0.7728
7 16 4.6811 -1.6352 1.7810
8 8 5.4635 -2.6008 1.0918
9 8 4.1092 -1.8683 3.0608
10 7 5.6293 -0.2859 1.9312
11 6 5.3904 0.6591 3.0249
12 6 4.5035 1.7763 2.5387
13 1 4.1533 1.7821 1.5170
14 6 4.1401 2.7917 3.3977
15 7 4.5679 2.7855 4.6413
16 14 3.0414 4.1769 2.7948
17 1 1.6190 3.8140 3.0194
18 1 3.3586 5.4209 3.5412
19 1 3.2731 4.3969 1.3447
20 6 6.7069 -0.0373 0.9705
21 6 8.0116 -0.5321 1.5399
22 6 8.4630 -1.7973 1.2140
23 6 9.6669 -2.2408 1.7391
24 6 10.3697 -1.3956 2.5845
25 6 9.8531 -0.1460 2.8690
26 7 8.7066 0.2448 2.3473
27 6 2.0837 -0.8124 1.2000
28 1 -0.3633 -1.0267 0.0436
29 1 -0.3633 0.5510 0.8675
30 1 -0.3633 0.4757 -0.9108
31 1 2.1922 -0.1692 -2.0798
32 1 1.4478 -1.6627 -1.4246
33 1 4.2426 -0.5995 -1.0603
34 1 3.6649 -2.2891 -1.0410
35 1 4.9034 0.1423 3.8518
36 1 6.3411 1.0711 3.3633
37 1 4.3119 3.4996 5.2458
38 1 6.4933 -0.5640 0.0405
39 1 6.7788 1.0325 0.7739
40 1 7.8869 -2.4308 0.5560
41 1 10.0461 -3.2233 1.4992
42 1 11.3087 -1.7101 3.0154
43 1 10.3941 0.5181 3.5268
44 1 1.4524 -1.6787 1.3982
45 1 2.1516 -0.1810 2.0859
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330728178.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:19:38
Heat of formation + Delta-G solvation = -39.246011 kcal
Electronic energy + Delta-G solvation = -28976.281987 eV
Core-core repulsion = 25120.423237 eV
Total energy + Delta-G solvation = -3855.858749 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-39.86099 -38.35691 -36.67444 -35.74960 -35.22638 -32.71393 -32.27047 -32.11063
-31.06544 -29.29441 -27.53808 -25.82348 -25.42786 -23.23390 -22.52487 -22.06468
-21.43224 -20.16957 -18.44877 -17.39489 -17.01252 -16.62397 -16.18893 -15.99205
-15.67221 -15.31809 -15.13800 -14.53128 -14.02482 -13.87823 -13.51950 -13.41470
-13.17029 -13.01026 -12.91488 -12.70315 -12.48589 -12.36562 -12.16442 -11.79807
-11.70567 -11.55309 -11.45628 -11.14410 -11.12430 -11.10451 -10.84491 -10.77587
-10.51556 -10.45466 -10.42931 -10.10424 -9.79535 -9.59503 -9.09257 -8.77980
-8.62858 -8.41226 -8.05070 -6.03670 -4.09298 1.11720 1.43416 1.58512
3.27613 3.34547 3.35897 3.48262 3.98983 4.27058 4.41154 4.56384
4.61709 4.76232 4.98107 5.00591 5.07767 5.11265 5.28413 5.31016
5.37463 5.40731 5.54542 5.58256 5.62375 5.73713 5.80584 5.82187
5.89076 5.97092 6.04043 6.07671 6.14469 6.21154 6.24025 6.30944
6.42539 6.49339 6.55118 6.60483 6.77488 6.97901 7.46545 7.49355
7.71449 7.93054 8.23499 8.38251 8.94689 9.55255 11.04715
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.009896 B = 0.005679 C = 0.004048
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2828.823160 B = 4929.159608 C = 6916.046802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.104 4.104
3 H 0.089 0.911
4 C -0.123 4.123
5 C 0.123 3.877
6 N -1.015 6.015
7 S 2.796 3.204
8 O -0.995 6.995
9 O -0.972 6.972
10 N -0.982 5.982
11 C 0.244 3.756
12 C -0.534 4.534
13 H 0.062 0.938
14 C 0.065 3.935
15 N -0.888 5.888
16 Si 0.891 3.109
17 H -0.280 1.280
18 H -0.287 1.287
19 H -0.274 1.274
20 C 0.182 3.818
21 C 0.116 3.884
22 C -0.158 4.158
23 C -0.084 4.084
24 C -0.181 4.181
25 C 0.094 3.906
26 N -0.457 5.457
27 C 0.129 3.871
28 H 0.055 0.945
29 H 0.059 0.941
30 H 0.055 0.945
31 H 0.075 0.925
32 H 0.071 0.929
33 H 0.061 0.939
34 H 0.064 0.936
35 H 0.046 0.954
36 H 0.052 0.948
37 H 0.263 0.737
38 H 0.079 0.921
39 H 0.099 0.901
40 H 0.144 0.856
41 H 0.130 0.870
42 H 0.129 0.871
43 H 0.152 0.848
44 H 0.059 0.941
45 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.622 -7.718 -11.086 13.605
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.124 4.124
3 H 0.108 0.892
4 C -0.162 4.162
5 C -0.003 4.003
6 N -0.854 5.854
7 S 2.807 3.193
8 O -0.979 6.979
9 O -0.956 6.956
10 N -0.822 5.822
11 C 0.122 3.878
12 C -0.574 4.574
13 H 0.080 0.920
14 C -0.138 4.138
15 N -0.526 5.526
16 Si 0.719 3.281
17 H -0.206 1.206
18 H -0.213 1.213
19 H -0.199 1.199
20 C 0.055 3.945
21 C -0.024 4.024
22 C -0.178 4.178
23 C -0.111 4.111
24 C -0.201 4.201
25 C -0.064 4.064
26 N -0.166 5.166
27 C 0.003 3.997
28 H 0.074 0.926
29 H 0.078 0.922
30 H 0.074 0.926
31 H 0.094 0.906
32 H 0.090 0.910
33 H 0.079 0.921
34 H 0.082 0.918
35 H 0.064 0.936
36 H 0.070 0.930
37 H 0.073 0.927
38 H 0.098 0.902
39 H 0.118 0.882
40 H 0.162 0.838
41 H 0.148 0.852
42 H 0.147 0.853
43 H 0.170 0.830
44 H 0.078 0.922
45 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 1.496 -7.650 -10.211 12.846
hybrid contribution -0.187 0.406 -0.475 0.652
sum 1.309 -7.244 -10.686 12.976
Atomic orbital electron populations
1.21695 0.94426 1.01779 1.01944 1.22421 0.95553 1.00084 0.94369
0.89218 1.22675 0.95596 0.99855 0.98050 1.21613 0.98212 1.00566
0.79953 1.59073 1.25825 1.84230 1.16242 1.01441 0.72129 0.73282
0.72495 1.93509 1.69445 1.58894 1.76088 1.93580 1.78232 1.84748
1.39069 1.57805 1.41792 1.43469 1.39124 1.19285 0.98430 0.86871
0.83194 1.21507 1.30684 1.07544 0.97642 0.91991 1.24927 0.96178
0.97920 0.94776 1.69943 1.44657 1.33342 1.04705 0.86622 0.80907
0.81806 0.78804 1.20566 1.21259 1.19892 1.19872 0.81884 1.03045
0.89738 1.21885 0.96159 0.90835 0.93531 1.22253 0.96780 0.97041
1.01772 1.21543 0.94461 0.99445 0.95601 1.22105 1.01564 0.96043
1.00409 1.22789 0.92113 0.94340 0.97109 1.67593 1.05756 1.36127
1.07137 1.22044 0.81874 0.97566 0.98180 0.92628 0.92171 0.92557
0.90622 0.90993 0.92060 0.91750 0.93563 0.93034 0.92729 0.90232
0.88246 0.83815 0.85232 0.85297 0.83030 0.92232 0.89286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.53 9.30 37.16 0.35 -1.19 16
2 C -0.10 -1.38 3.66 -88.34 -0.32 -1.70 16
3 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16
4 C -0.12 -1.37 6.41 -24.89 -0.16 -1.53 16
5 C 0.12 1.63 7.05 -3.06 -0.02 1.61 16
6 N -1.02 -17.25 3.75 -111.29 -0.42 -17.66 16
7 S 2.80 56.65 6.29 -107.50 -0.68 55.97 16
8 O -1.00 -19.60 15.58 -57.17 -0.89 -20.49 16
9 O -0.97 -23.34 16.16 -57.17 -0.92 -24.26 16
10 N -0.98 -20.67 2.81 -116.94 -0.33 -21.00 16
11 C 0.24 6.22 5.42 -5.19 -0.03 6.19 16
12 C -0.53 -14.00 9.38 -34.44 -0.32 -14.33 16
13 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16
14 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
15 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16
16 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16
17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16
19 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16
20 C 0.18 3.30 5.67 -5.19 -0.03 3.27 16
21 C 0.12 2.10 6.35 -82.59 -0.52 1.57 16
22 C -0.16 -2.51 9.38 -39.44 -0.37 -2.88 16
23 C -0.08 -1.14 10.18 -39.28 -0.40 -1.54 16
24 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16
25 C 0.09 1.44 11.18 -17.55 -0.20 1.25 16
26 N -0.46 -8.63 10.08 -9.47 -0.10 -8.72 16
27 C 0.13 2.09 6.40 -2.41 -0.02 2.07 16
28 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16
29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16
31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
32 H 0.07 0.70 8.04 -51.93 -0.42 0.29 16
33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.05 1.32 6.89 -51.93 -0.36 0.96 16
36 H 0.05 1.42 7.91 -51.93 -0.41 1.00 16
37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
38 H 0.08 1.19 7.51 -51.93 -0.39 0.80 16
39 H 0.10 1.84 8.12 -51.92 -0.42 1.42 16
40 H 0.14 2.19 7.16 -52.49 -0.38 1.81 16
41 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16
42 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16
43 H 0.15 1.92 8.06 -52.48 -0.42 1.50 16
44 H 0.06 0.88 8.01 -51.93 -0.42 0.46 16
45 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16
LS Contribution 383.82 15.07 5.78 5.78
Total: -1.00 -33.08 383.82 -11.36 -44.44
By element:
Atomic # 1 Polarization: 10.57 SS G_CDS: -6.98 Total: 3.59 kcal
Atomic # 6 Polarization: -5.74 SS G_CDS: -2.54 Total: -8.28 kcal
Atomic # 7 Polarization: -72.34 SS G_CDS: -0.11 Total: -72.44 kcal
Atomic # 8 Polarization: -42.94 SS G_CDS: -1.81 Total: -44.75 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal
Atomic # 16 Polarization: 56.65 SS G_CDS: -0.68 Total: 55.97 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -33.08 -11.36 -44.44 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330728178.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.192 kcal
(2) G-P(sol) polarization free energy of solvation -33.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.887 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.359 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.246 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds