Wall clock time and date at job start Wed Apr 1 2020 00:19:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08996 * 110.89030 * 2 1
4 4 C 1.55163 * 110.99959 * 236.11676 * 2 1 3
5 5 C 1.54328 * 102.94111 * 206.42067 * 4 2 1
6 6 N 1.47024 * 107.26922 * 22.19727 * 5 4 2
7 7 S 1.65603 * 125.64734 * 181.01804 * 6 5 4
8 8 O 1.42103 * 106.40110 * 330.49901 * 7 6 5
9 9 O 1.42101 * 106.40231 * 197.57985 * 7 6 5
10 10 N 1.65597 * 107.21837 * 84.03991 * 7 6 5
11 11 C 1.46500 * 119.99756 * 92.10380 * 10 7 6
12 12 C 1.50698 * 109.47225 * 264.99972 * 11 10 7
13 13 H 1.08003 * 120.00112 * 359.97438 * 12 11 10
14 14 C 1.37877 * 120.00296 * 180.02562 * 12 11 10
15 15 N 1.31513 * 119.99837 * 0.02562 * 14 12 11
16 16 Si 1.86799 * 120.00207 * 179.97438 * 14 12 11
17 17 H 1.48506 * 109.47029 * 90.00453 * 16 14 12
18 18 H 1.48500 * 109.47201 * 209.99829 * 16 14 12
19 19 H 1.48490 * 109.47239 * 330.00358 * 16 14 12
20 20 C 1.46498 * 119.99836 * 272.10745 * 10 7 6
21 21 C 1.50707 * 109.47054 * 263.26141 * 20 10 7
22 22 C 1.38228 * 119.61181 * 95.23207 * 21 20 10
23 23 C 1.38626 * 119.15175 * 179.75415 * 22 21 20
24 24 C 1.38673 * 118.42591 * 0.50954 * 23 22 21
25 25 C 1.38176 * 119.16270 * 359.73165 * 24 23 22
26 26 N 1.31845 * 119.61866 * 275.50593 * 21 20 10
27 27 C 1.47420 * 108.70480 * 1.28589 * 6 5 4
28 28 H 1.08993 * 109.46844 * 182.43030 * 1 2 3
29 29 H 1.09000 * 109.46724 * 302.42555 * 1 2 3
30 30 H 1.08989 * 109.47077 * 62.42420 * 1 2 3
31 31 H 1.09005 * 110.71812 * 88.06693 * 4 2 1
32 32 H 1.08995 * 110.87843 * 324.86025 * 4 2 1
33 33 H 1.08993 * 109.88578 * 262.77967 * 5 4 2
34 34 H 1.09000 * 109.87809 * 141.60915 * 5 4 2
35 35 H 1.09000 * 109.47525 * 25.00420 * 11 10 7
36 36 H 1.09004 * 109.47043 * 145.00392 * 11 10 7
37 37 H 0.96997 * 120.00105 * 180.02562 * 15 14 12
38 38 H 1.08992 * 109.47512 * 23.26882 * 20 10 7
39 39 H 1.09009 * 109.47074 * 143.26616 * 20 10 7
40 40 H 1.07994 * 120.42289 * 359.97438 * 22 21 20
41 41 H 1.08010 * 120.78323 * 180.21384 * 23 22 21
42 42 H 1.07997 * 120.41989 * 179.70815 * 24 23 22
43 43 H 1.08003 * 119.62076 * 179.97438 * 25 24 23
44 44 H 1.09004 * 110.37115 * 94.48333 * 27 6 5
45 45 H 1.09004 * 110.37041 * 216.80692 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9187 1.0183 0.0000
4 6 2.0861 -0.8076 -1.2026
5 6 3.4675 -1.2740 -0.6966
6 7 3.4272 -1.2434 0.7728
7 16 4.6811 -1.6352 1.7810
8 8 5.4635 -2.6008 1.0918
9 8 4.1092 -1.8683 3.0608
10 7 5.6293 -0.2859 1.9312
11 6 5.3904 0.6591 3.0249
12 6 4.5035 1.7763 2.5387
13 1 4.1533 1.7821 1.5170
14 6 4.1401 2.7917 3.3977
15 7 4.5679 2.7855 4.6413
16 14 3.0414 4.1769 2.7948
17 1 1.6190 3.8140 3.0194
18 1 3.3586 5.4209 3.5412
19 1 3.2731 4.3969 1.3447
20 6 6.7069 -0.0373 0.9705
21 6 8.0116 -0.5321 1.5399
22 6 8.4630 -1.7973 1.2140
23 6 9.6669 -2.2408 1.7391
24 6 10.3697 -1.3956 2.5845
25 6 9.8531 -0.1460 2.8690
26 7 8.7066 0.2448 2.3473
27 6 2.0837 -0.8124 1.2000
28 1 -0.3633 -1.0267 0.0436
29 1 -0.3633 0.5510 0.8675
30 1 -0.3633 0.4757 -0.9108
31 1 2.1922 -0.1692 -2.0798
32 1 1.4478 -1.6627 -1.4246
33 1 4.2426 -0.5995 -1.0603
34 1 3.6649 -2.2891 -1.0410
35 1 4.9034 0.1423 3.8518
36 1 6.3411 1.0711 3.3633
37 1 4.3119 3.4996 5.2458
38 1 6.4933 -0.5640 0.0405
39 1 6.7788 1.0325 0.7739
40 1 7.8869 -2.4308 0.5560
41 1 10.0461 -3.2233 1.4992
42 1 11.3087 -1.7101 3.0154
43 1 10.3941 0.5181 3.5268
44 1 1.4524 -1.6787 1.3982
45 1 2.1516 -0.1810 2.0859
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000330728178.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 00:19:37
Heat of formation + Delta-G solvation = -61.797202 kcal
Electronic energy + Delta-G solvation = -28977.259880 eV
Core-core repulsion = 25120.423237 eV
Total energy + Delta-G solvation = -3856.836642 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.07657 -39.49525 -38.36460 -37.41898 -36.93492 -34.67730 -33.38741 -33.31691
-32.49058 -30.36687 -29.34081 -27.07399 -26.90125 -24.57134 -24.23594 -23.22766
-22.77901 -21.21758 -19.97647 -18.92601 -18.68199 -18.26599 -17.72015 -17.31900
-16.98721 -16.77011 -16.38250 -16.29867 -15.54854 -15.06250 -14.87308 -14.53375
-14.46401 -14.37964 -14.22837 -14.06822 -13.87442 -13.74740 -13.57699 -13.38395
-13.25426 -13.02733 -12.94150 -12.73248 -12.67838 -12.50447 -12.43138 -12.34229
-11.94568 -11.86473 -11.77096 -11.49360 -11.43007 -10.78013 -10.57244 -10.41849
-10.00543 -9.95157 -9.71356 -8.14305 -6.27727 -0.43283 0.20194 0.43424
1.41847 1.43219 1.53266 1.95263 2.43228 2.50474 2.94466 3.17151
3.24539 3.40721 3.63786 3.78952 3.85775 4.00635 4.04599 4.09660
4.28902 4.32056 4.39407 4.54231 4.58365 4.60892 4.67289 4.70344
4.85056 4.86235 4.91052 4.96479 4.98957 5.09363 5.22057 5.24288
5.26266 5.29295 5.35135 5.36443 5.42824 5.54901 5.60749 5.74829
5.83676 5.91811 6.12880 6.83641 7.17151 7.41395 8.94659
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.009896 B = 0.005679 C = 0.004048
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2828.823160 B = 4929.159608 C = 6916.046802
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.102 4.102
3 H 0.072 0.928
4 C -0.110 4.110
5 C 0.108 3.892
6 N -1.016 6.016
7 S 2.807 3.193
8 O -0.990 6.990
9 O -1.018 7.018
10 N -0.987 5.987
11 C 0.267 3.733
12 C -0.534 4.534
13 H 0.072 0.928
14 C 0.008 3.992
15 N -0.931 5.931
16 Si 0.959 3.041
17 H -0.271 1.271
18 H -0.288 1.288
19 H -0.258 1.258
20 C 0.179 3.821
21 C 0.086 3.914
22 C -0.167 4.167
23 C -0.082 4.082
24 C -0.165 4.165
25 C 0.075 3.925
26 N -0.504 5.504
27 C 0.120 3.880
28 H 0.068 0.932
29 H 0.048 0.952
30 H 0.077 0.923
31 H 0.100 0.900
32 H 0.093 0.907
33 H 0.069 0.931
34 H 0.079 0.921
35 H 0.006 0.994
36 H 0.023 0.977
37 H 0.263 0.737
38 H 0.110 0.890
39 H 0.086 0.914
40 H 0.148 0.852
41 H 0.168 0.832
42 H 0.171 0.829
43 H 0.170 0.830
44 H 0.074 0.926
45 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.471 -8.586 -13.965 16.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.122 4.122
3 H 0.091 0.909
4 C -0.148 4.148
5 C -0.016 4.016
6 N -0.857 5.857
7 S 2.817 3.183
8 O -0.974 6.974
9 O -1.002 7.002
10 N -0.825 5.825
11 C 0.144 3.856
12 C -0.573 4.573
13 H 0.091 0.909
14 C -0.191 4.191
15 N -0.571 5.571
16 Si 0.784 3.216
17 H -0.196 1.196
18 H -0.214 1.214
19 H -0.182 1.182
20 C 0.053 3.947
21 C -0.053 4.053
22 C -0.188 4.188
23 C -0.108 4.108
24 C -0.185 4.185
25 C -0.083 4.083
26 N -0.214 5.214
27 C -0.006 4.006
28 H 0.087 0.913
29 H 0.067 0.933
30 H 0.096 0.904
31 H 0.119 0.881
32 H 0.112 0.888
33 H 0.087 0.913
34 H 0.097 0.903
35 H 0.024 0.976
36 H 0.041 0.959
37 H 0.072 0.928
38 H 0.128 0.872
39 H 0.104 0.896
40 H 0.166 0.834
41 H 0.186 0.814
42 H 0.189 0.811
43 H 0.187 0.813
44 H 0.092 0.908
45 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 1.363 -8.535 -13.128 15.718
hybrid contribution -0.039 0.583 0.423 0.721
sum 1.324 -7.952 -12.705 15.047
Atomic orbital electron populations
1.21682 0.92412 1.02781 1.02543 1.22401 0.97135 0.98849 0.93806
0.90940 1.22690 0.93999 1.00589 0.97555 1.22013 1.00287 1.01954
0.77363 1.58837 1.25053 1.83948 1.17885 1.00902 0.72246 0.73117
0.71988 1.93498 1.69678 1.58560 1.75625 1.93516 1.79118 1.85457
1.42130 1.57675 1.43405 1.42635 1.38817 1.18656 0.96377 0.86994
0.83596 1.21775 1.30129 1.07423 0.97984 0.90940 1.25850 0.97696
1.00722 0.94801 1.70100 1.46419 1.34406 1.06176 0.85534 0.79037
0.78104 0.78930 1.19634 1.21398 1.18195 1.20047 0.81662 1.02841
0.90161 1.21846 0.96390 0.92131 0.94890 1.22371 0.98023 0.96160
1.02196 1.22030 0.93275 1.00953 0.94518 1.22526 1.02508 0.94506
0.98955 1.23258 0.91516 0.96114 0.97384 1.67503 1.07588 1.37813
1.08474 1.22202 0.81870 0.98099 0.98379 0.91294 0.93265 0.90437
0.88148 0.88844 0.91255 0.90267 0.97629 0.95884 0.92781 0.87199
0.89595 0.83379 0.81424 0.81123 0.81306 0.90809 0.93209
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.63 9.30 71.98 0.67 -1.96 16
2 C -0.10 -2.50 3.66 -9.32 -0.03 -2.54 16
3 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
4 C -0.11 -2.05 6.41 31.79 0.20 -1.85 16
5 C 0.11 2.64 7.05 86.73 0.61 3.25 16
6 N -1.02 -34.25 3.75 -506.00 -1.90 -36.14 16
7 S 2.81 116.68 6.29 -56.49 -0.36 116.32 16
8 O -0.99 -38.63 15.58 -128.00 -1.99 -40.63 16
9 O -1.02 -51.58 16.16 -128.00 -2.07 -53.65 16
10 N -0.99 -43.38 2.81 -523.90 -1.47 -44.85 16
11 C 0.27 14.54 5.42 85.63 0.46 15.00 16
12 C -0.53 -29.11 9.38 25.60 0.24 -28.87 16
13 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16
14 C 0.01 0.46 5.46 84.65 0.46 0.92 16
15 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16
16 Si 0.96 43.19 29.54 68.60 2.03 45.21 16
17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16
19 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16
20 C 0.18 6.69 5.67 85.64 0.49 7.18 16
21 C 0.09 3.19 6.35 42.56 0.27 3.47 16
22 C -0.17 -5.16 9.38 22.36 0.21 -4.95 16
23 C -0.08 -2.00 10.18 22.47 0.23 -1.77 16
24 C -0.17 -3.89 10.11 22.36 0.23 -3.66 16
25 C 0.07 2.27 11.18 84.67 0.95 3.21 16
26 N -0.50 -19.69 10.08 -183.88 -1.85 -21.54 16
27 C 0.12 3.89 6.40 86.93 0.56 4.45 16
28 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16
29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
31 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16
32 H 0.09 1.40 8.04 -2.39 -0.02 1.38 16
33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
35 H 0.01 0.35 6.89 -2.39 -0.02 0.34 16
36 H 0.02 1.37 7.91 -2.38 -0.02 1.35 16
37 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16
38 H 0.11 3.28 7.51 -2.39 -0.02 3.26 16
39 H 0.09 3.35 8.12 -2.38 -0.02 3.33 16
40 H 0.15 4.33 7.16 -2.91 -0.02 4.31 16
41 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16
42 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16
43 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16
44 H 0.07 2.15 8.01 -2.38 -0.02 2.13 16
45 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16
Total: -1.00 -76.73 383.82 -0.82 -77.55
By element:
Atomic # 1 Polarization: 21.14 SS G_CDS: 0.97 Total: 22.11 kcal
Atomic # 6 Polarization: -13.67 SS G_CDS: 5.54 Total: -8.13 kcal
Atomic # 7 Polarization: -153.85 SS G_CDS: -4.94 Total: -158.79 kcal
Atomic # 8 Polarization: -90.21 SS G_CDS: -4.06 Total: -94.28 kcal
Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal
Atomic # 16 Polarization: 116.68 SS G_CDS: -0.36 Total: 116.32 kcal
Total: -76.73 -0.82 -77.55 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330728178.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.753 kcal
(2) G-P(sol) polarization free energy of solvation -76.728 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds