Wall clock time and date at job start Wed Apr 1 2020 00:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.64336 * 2 1 4 4 C 1.55154 * 110.72024 * 123.33934 * 2 1 3 5 5 C 1.54905 * 101.58482 * 153.86511 * 4 2 1 6 6 N 1.47425 * 104.82973 * 322.98761 * 5 4 2 7 7 S 1.65603 * 125.64653 * 204.09273 * 6 5 4 8 8 O 1.42098 * 106.40034 * 29.23175 * 7 6 5 9 9 O 1.42100 * 106.40048 * 162.15028 * 7 6 5 10 10 N 1.65595 * 107.21766 * 275.69149 * 7 6 5 11 11 C 1.46499 * 119.99880 * 275.39065 * 10 7 6 12 12 C 1.50697 * 109.47285 * 95.00360 * 11 10 7 13 13 H 1.08001 * 119.99650 * 359.97438 * 12 11 10 14 14 C 1.37880 * 120.00508 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99923 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00097 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47049 * 90.00292 * 16 14 12 18 18 H 1.48501 * 109.46997 * 209.99898 * 16 14 12 19 19 H 1.48497 * 109.47351 * 330.00145 * 16 14 12 20 20 C 1.46498 * 120.00444 * 95.39503 * 10 7 6 21 21 C 1.50703 * 109.47154 * 95.10967 * 20 10 7 22 22 C 1.38224 * 119.61347 * 95.23832 * 21 20 10 23 23 C 1.38630 * 119.15869 * 179.97438 * 22 21 20 24 24 C 1.38674 * 118.42016 * 359.97438 * 23 22 21 25 25 C 1.38182 * 119.16276 * 359.97438 * 24 23 22 26 26 N 1.31856 * 119.62069 * 274.95453 * 21 20 10 27 27 C 1.47016 * 108.70365 * 24.12998 * 6 5 4 28 28 H 1.08995 * 109.47034 * 183.14002 * 1 2 3 29 29 H 1.09002 * 109.47072 * 63.14225 * 1 2 3 30 30 H 1.09002 * 109.47018 * 303.14256 * 1 2 3 31 31 H 1.09007 * 111.00228 * 271.93584 * 4 2 1 32 32 H 1.08994 * 111.00879 * 35.78430 * 4 2 1 33 33 H 1.08994 * 110.36784 * 204.15040 * 5 4 2 34 34 H 1.09001 * 110.37115 * 81.82828 * 5 4 2 35 35 H 1.09004 * 109.47243 * 215.00184 * 11 10 7 36 36 H 1.08995 * 109.47529 * 335.00043 * 11 10 7 37 37 H 0.96992 * 120.00442 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.47384 * 215.11439 * 20 10 7 39 39 H 1.09006 * 109.46535 * 335.11362 * 20 10 7 40 40 H 1.07996 * 120.42494 * 359.97438 * 22 21 20 41 41 H 1.08000 * 120.78729 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.41842 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.61310 * 180.02562 * 25 24 23 44 44 H 1.09004 * 109.88387 * 239.52507 * 27 6 5 45 45 H 1.08998 * 110.01309 * 118.42937 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7976 1.2124 5 6 3.4632 -1.2510 0.6854 6 7 3.2445 -1.5495 -0.7416 7 16 4.1633 -2.5713 -1.6658 8 8 4.6798 -3.5567 -0.7818 9 8 3.3836 -2.8868 -2.8112 10 7 5.4643 -1.7035 -2.2102 11 6 5.3445 -0.8847 -3.4191 12 6 5.0152 0.5346 -3.0341 13 1 4.9056 0.8000 -1.9929 14 6 4.8527 1.4940 -4.0109 15 7 4.9856 1.1707 -5.2787 16 14 4.4438 3.2530 -3.5334 17 1 5.7015 4.0186 -3.3401 18 1 3.6407 3.8845 -4.6112 19 1 3.6642 3.2545 -2.2695 20 6 6.7350 -1.7545 -1.4831 21 6 7.6286 -2.7961 -2.1057 22 6 8.5652 -2.4171 -3.0490 23 6 9.3827 -3.3830 -3.6152 24 6 9.2271 -4.6998 -3.2094 25 6 8.2697 -5.0033 -2.2604 26 7 7.5117 -4.0576 -1.7403 27 6 2.0760 -0.7892 -1.2086 28 1 -0.3633 -1.0261 0.0563 29 1 -0.3633 0.4643 -0.9168 30 1 -0.3633 0.5619 0.8605 31 1 2.1850 -0.1554 2.0868 32 1 1.4452 -1.6560 1.4347 33 1 3.7959 -2.1447 1.2132 34 1 4.1932 -0.4493 0.7977 35 1 6.2875 -0.9034 -3.9656 36 1 4.5507 -1.2833 -4.0508 37 1 4.8717 1.8457 -5.9659 38 1 7.2220 -0.7807 -1.5339 39 1 6.5471 -2.0129 -0.4410 40 1 8.6591 -1.3816 -3.3411 41 1 10.1230 -3.1162 -4.3549 42 1 9.8470 -5.4783 -3.6291 43 1 8.1426 -6.0264 -1.9387 44 1 1.3129 -1.4732 -1.5800 45 1 2.3715 -0.0992 -1.9989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330728179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:41 Heat of formation + Delta-G solvation = -61.765192 kcal Electronic energy + Delta-G solvation = -28898.152004 eV Core-core repulsion = 25041.316749 eV Total energy + Delta-G solvation = -3856.835254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07608 -39.51254 -38.28923 -37.43709 -36.85852 -34.68470 -33.39359 -33.32912 -32.44257 -30.37151 -29.37467 -27.07575 -26.85716 -24.65349 -24.14869 -23.27092 -22.77831 -21.17321 -19.94367 -18.91521 -18.67892 -18.22998 -17.58745 -17.47871 -16.99173 -16.75932 -16.35580 -16.31637 -15.52699 -14.98692 -14.73759 -14.68489 -14.43635 -14.40691 -14.20159 -14.04224 -13.82668 -13.77666 -13.49625 -13.38337 -13.17929 -13.04152 -12.91325 -12.82060 -12.71037 -12.48232 -12.39758 -12.30634 -11.90610 -11.84158 -11.76983 -11.57462 -11.44209 -10.78345 -10.57358 -10.38326 -9.99786 -9.94383 -9.75249 -8.15763 -6.29480 -0.37758 0.20996 0.42290 1.44025 1.45224 1.55353 1.99938 2.43700 2.56017 2.94922 3.15898 3.28207 3.41662 3.67155 3.79492 3.84028 3.99083 4.02831 4.11618 4.27020 4.33414 4.41259 4.51322 4.60387 4.61634 4.68147 4.73861 4.81936 4.84273 4.88639 4.91947 4.98328 5.13557 5.20661 5.22377 5.23455 5.26229 5.31271 5.32253 5.44559 5.51003 5.58438 5.74256 5.83746 5.91953 6.10189 6.82305 7.13566 7.40583 8.92546 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.005617 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.495224 B = 4983.883094 C = 7078.299962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.111 4.111 5 C 0.106 3.894 6 N -1.015 6.015 7 S 2.804 3.196 8 O -0.980 6.980 9 O -1.023 7.023 10 N -0.987 5.987 11 C 0.265 3.735 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.013 3.987 15 N -0.929 5.929 16 Si 0.958 3.042 17 H -0.273 1.273 18 H -0.290 1.290 19 H -0.257 1.257 20 C 0.180 3.820 21 C 0.085 3.915 22 C -0.164 4.164 23 C -0.081 4.081 24 C -0.165 4.165 25 C 0.074 3.926 26 N -0.498 5.498 27 C 0.118 3.882 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.006 0.994 37 H 0.265 0.735 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.137 0.863 41 H 0.164 0.836 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.056 0.944 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 -3.716 11.531 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.103 0.897 4 C -0.150 4.150 5 C -0.018 4.018 6 N -0.856 5.856 7 S 2.815 3.185 8 O -0.964 6.964 9 O -1.008 7.008 10 N -0.826 5.826 11 C 0.142 3.858 12 C -0.574 4.574 13 H 0.091 0.909 14 C -0.186 4.186 15 N -0.568 5.568 16 Si 0.783 3.217 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.181 1.181 20 C 0.053 3.947 21 C -0.054 4.054 22 C -0.184 4.184 23 C -0.107 4.107 24 C -0.185 4.185 25 C -0.083 4.083 26 N -0.208 5.208 27 C -0.008 4.008 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.155 0.845 41 H 0.181 0.819 42 H 0.189 0.811 43 H 0.192 0.808 44 H 0.074 0.926 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.288 -4.843 11.741 12.766 hybrid contribution 0.576 1.415 -1.311 2.013 sum 1.864 -3.428 10.430 11.136 Atomic orbital electron populations 1.21748 0.92577 1.02500 1.02744 1.22227 0.97194 0.99114 0.93096 0.89656 1.22843 0.94045 1.00483 0.97633 1.22281 0.99774 1.01133 0.78653 1.58841 1.42212 1.63069 1.21480 1.00996 0.72297 0.73197 0.72054 1.93574 1.79771 1.56627 1.66459 1.93492 1.71312 1.83904 1.52088 1.57697 1.23157 1.63958 1.37826 1.18703 0.96657 0.89217 0.81231 1.21754 1.48095 0.93723 0.93810 0.90893 1.25795 0.95028 1.03192 0.94619 1.70076 1.50453 1.35629 1.00680 0.85548 0.78464 0.79387 0.78293 1.19882 1.21553 1.18115 1.20036 0.83019 0.96944 0.94670 1.21861 0.95412 0.92389 0.95691 1.22232 0.96788 1.02133 0.97279 1.21995 0.97903 0.92832 0.97983 1.22531 0.99747 0.97966 0.98240 1.23321 0.91731 0.99281 0.93977 1.67601 1.24797 1.01337 1.27079 1.21883 0.86325 0.94293 0.98285 0.92247 0.92771 0.90093 0.87223 0.89962 0.90064 0.90974 0.95908 0.97551 0.92657 0.87667 0.88829 0.84472 0.81863 0.81110 0.80773 0.92574 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.14 71.98 0.66 -2.06 16 2 C -0.10 -2.37 3.55 -9.60 -0.03 -2.40 16 3 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.11 -2.30 6.53 31.98 0.21 -2.09 16 5 C 0.11 2.90 7.14 86.85 0.62 3.52 16 6 N -1.01 -36.90 3.75 -506.44 -1.90 -38.80 16 7 S 2.80 123.85 6.31 -56.49 -0.36 123.49 16 8 O -0.98 -43.49 16.16 -128.00 -2.07 -45.56 16 9 O -1.02 -53.59 16.33 -128.00 -2.09 -55.68 16 10 N -0.99 -43.40 2.81 -523.92 -1.47 -44.87 16 11 C 0.27 13.69 5.44 85.63 0.47 14.15 16 12 C -0.53 -27.60 9.38 25.60 0.24 -27.36 16 13 H 0.07 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.01 0.70 5.46 84.66 0.46 1.16 16 15 N -0.93 -53.39 13.29 21.45 0.28 -53.11 16 16 Si 0.96 41.20 29.54 68.60 2.03 43.22 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 20 C 0.18 6.72 5.68 85.63 0.49 7.20 16 21 C 0.09 3.14 6.36 42.55 0.27 3.41 16 22 C -0.16 -5.26 9.65 22.36 0.22 -5.04 16 23 C -0.08 -2.06 10.18 22.47 0.23 -1.83 16 24 C -0.17 -3.84 10.11 22.36 0.23 -3.62 16 25 C 0.07 2.15 11.18 84.67 0.95 3.09 16 26 N -0.50 -18.54 10.09 -183.89 -1.86 -20.39 16 27 C 0.12 4.09 6.54 86.73 0.57 4.66 16 28 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.58 8.02 -2.39 -0.02 1.56 16 33 H 0.08 2.14 7.81 -2.39 -0.02 2.12 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.02 1.22 8.04 -2.38 -0.02 1.20 16 36 H 0.01 0.39 6.99 -2.39 -0.02 0.37 16 37 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.11 3.63 8.01 -2.39 -0.02 3.61 16 39 H 0.09 3.25 7.45 -2.38 -0.02 3.23 16 40 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 41 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 42 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.06 1.96 7.82 -2.39 -0.02 1.94 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.38 385.38 -0.90 -75.28 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.97 Total: 23.61 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.56 Total: -7.21 kcal Atomic # 7 Polarization: -152.23 SS G_CDS: -4.94 Total: -157.17 kcal Atomic # 8 Polarization: -97.08 SS G_CDS: -4.16 Total: -101.24 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 123.85 SS G_CDS: -0.36 Total: 123.49 kcal Total: -74.38 -0.90 -75.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330728179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.519 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds