Wall clock time and date at job start Wed Apr 1 2020 00:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.88496 * 2 1 4 4 C 1.55153 * 111.00826 * 123.88358 * 2 1 3 5 5 C 1.54323 * 103.10236 * 153.48934 * 4 2 1 6 6 H 1.09000 * 109.88167 * 97.31380 * 5 4 2 7 7 C 1.50703 * 109.88051 * 218.47902 * 5 4 2 8 8 C 1.38673 * 120.41610 * 258.54342 * 7 5 4 9 9 C 1.38630 * 118.41645 * 180.02562 * 8 7 5 10 10 C 1.38225 * 119.16351 * 359.97438 * 9 8 7 11 11 N 1.31851 * 120.76310 * 0.02562 * 10 9 8 12 12 C 1.31889 * 121.72864 * 359.70565 * 11 10 9 13 13 N 1.47317 * 107.12157 * 338.02434 * 5 4 2 14 14 S 1.65595 * 125.61965 * 178.81830 * 13 5 4 15 15 O 1.42102 * 106.40103 * 23.37512 * 14 13 5 16 16 O 1.42100 * 106.40897 * 156.29824 * 14 13 5 17 17 N 1.65604 * 107.21875 * 269.83803 * 14 13 5 18 18 C 1.46497 * 120.00321 * 269.99925 * 17 14 13 19 19 C 1.46502 * 120.00022 * 89.99685 * 17 14 13 20 20 C 1.50701 * 109.47254 * 95.00152 * 19 17 14 21 21 H 1.08001 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31521 * 120.00115 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00195 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46747 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47239 * 119.99827 * 24 22 20 27 27 H 1.48506 * 109.47266 * 240.00487 * 24 22 20 28 28 C 1.47427 * 108.73481 * 358.69551 * 13 5 4 29 29 H 1.08995 * 109.47091 * 296.11171 * 1 2 3 30 30 H 1.08997 * 109.47530 * 56.11897 * 1 2 3 31 31 H 1.09011 * 109.46565 * 176.11952 * 1 2 3 32 32 H 1.09002 * 110.72030 * 271.94200 * 4 2 1 33 33 H 1.09003 * 110.72184 * 35.03851 * 4 2 1 34 34 H 1.07992 * 120.79144 * 359.97438 * 8 7 5 35 35 H 1.08007 * 120.41652 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.61411 * 179.97438 * 10 9 8 37 37 H 1.07990 * 119.62179 * 180.30715 * 12 11 10 38 38 H 1.09001 * 109.47188 * 89.98979 * 18 17 14 39 39 H 1.08998 * 109.47701 * 209.99687 * 18 17 14 40 40 H 1.09002 * 109.46630 * 330.00144 * 18 17 14 41 41 H 1.09004 * 109.47076 * 215.00745 * 19 17 14 42 42 H 1.09005 * 109.46750 * 335.00177 * 19 17 14 43 43 H 0.96997 * 119.99673 * 179.97438 * 23 22 20 44 44 H 1.08996 * 110.37285 * 265.44500 * 28 13 5 45 45 H 1.09002 * 110.36636 * 143.12253 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 1.2024 5 6 3.4672 -1.2777 0.6992 6 1 4.2435 -0.6051 1.0642 7 6 3.7357 -2.6818 1.1763 8 6 4.5704 -2.9074 2.2605 9 6 4.7889 -4.2155 2.6639 10 6 4.1715 -5.2442 1.9773 11 7 3.3839 -4.9923 0.9504 12 6 3.1491 -3.7603 0.5421 13 7 3.4272 -1.2432 -0.7730 14 16 4.6815 -1.6331 -1.7813 15 8 5.5403 -2.4895 -1.0408 16 8 4.0983 -2.0025 -3.0233 17 7 5.5360 -0.2425 -2.0613 18 6 5.1820 0.6199 -3.1914 19 6 6.6460 0.1255 -1.1788 20 6 7.9424 -0.3635 -1.7715 21 1 7.9398 -0.8949 -2.7118 22 6 9.1318 -0.1317 -1.1139 23 7 9.1351 0.5158 0.0309 24 14 10.7389 -0.7372 -1.8489 25 1 10.4653 -1.4321 -3.1325 26 1 11.6382 0.4190 -2.0932 27 1 11.3905 -1.6806 -0.9051 28 6 2.0852 -0.8070 -1.2001 29 1 -0.3633 0.4523 0.9227 30 1 -0.3634 0.5729 -0.8531 31 1 -0.3633 -1.0254 -0.0696 32 1 2.1922 -0.1692 2.0796 33 1 1.4452 -1.6610 1.4234 34 1 5.0396 -2.0836 2.7777 35 1 5.4327 -4.4282 3.5046 36 1 4.3370 -6.2661 2.2851 37 1 2.4941 -3.5928 -0.2999 38 1 4.4434 1.3545 -2.8705 39 1 6.0739 1.1340 -3.5496 40 1 4.7650 0.0128 -3.9949 41 1 6.6813 1.2097 -1.0721 42 1 6.4988 -0.3313 -0.2001 43 1 9.9719 0.6785 0.4936 44 1 1.4519 -1.6708 -1.4020 45 1 2.1559 -0.1726 -2.0837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330853067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:27 Heat of formation + Delta-G solvation = -34.568906 kcal Electronic energy + Delta-G solvation = -29189.145843 eV Core-core repulsion = 25333.489908 eV Total energy + Delta-G solvation = -3855.655935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.30442 -38.48017 -36.62989 -35.50087 -35.13614 -33.27313 -32.45568 -32.20951 -31.24615 -28.65881 -27.79154 -26.12652 -25.07018 -23.62016 -23.34670 -22.29117 -21.16655 -20.50266 -18.54533 -17.43178 -17.15476 -16.68408 -16.45976 -16.13537 -15.68026 -15.31901 -14.96073 -14.43378 -14.06216 -13.86150 -13.64362 -13.45576 -13.39201 -13.16033 -12.99657 -12.85898 -12.74834 -12.30365 -12.23602 -12.18473 -11.84371 -11.62214 -11.45209 -11.30635 -11.15031 -11.10129 -10.99227 -10.86402 -10.81602 -10.70629 -10.54405 -10.05219 -9.76703 -9.56902 -9.39671 -8.99687 -8.67054 -8.46630 -8.07836 -6.09514 -4.12979 1.08975 1.31078 1.50773 3.29003 3.36731 3.42064 3.47081 3.93489 4.11787 4.28398 4.42698 4.49270 4.59641 4.72035 4.88828 5.01290 5.03088 5.13894 5.21277 5.25434 5.30780 5.35059 5.40116 5.44938 5.58282 5.62662 5.66653 5.72198 5.80339 5.88579 5.90598 5.96746 5.98668 6.11853 6.19284 6.28899 6.30255 6.43254 6.51193 6.61880 6.87714 7.18306 7.37012 7.57995 7.88525 8.14680 8.17658 8.89596 9.52468 10.99140 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.005098 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.853118 B = 5490.574857 C = 6770.375396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.088 0.912 4 C -0.114 4.114 5 C 0.198 3.802 6 H 0.090 0.910 7 C -0.135 4.135 8 C -0.054 4.054 9 C -0.168 4.168 10 C 0.092 3.908 11 N -0.486 5.486 12 C 0.110 3.890 13 N -1.018 6.018 14 S 2.786 3.214 15 O -0.949 6.949 16 O -0.993 6.993 17 N -0.996 5.996 18 C 0.095 3.905 19 C 0.259 3.741 20 C -0.526 4.526 21 H 0.060 0.940 22 C 0.063 3.937 23 N -0.896 5.896 24 Si 0.895 3.105 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.126 3.874 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.036 0.964 43 H 0.263 0.737 44 H 0.067 0.933 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 -0.378 5.056 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.106 0.894 4 C -0.152 4.152 5 C 0.090 3.910 6 H 0.108 0.892 7 C -0.139 4.139 8 C -0.080 4.080 9 C -0.188 4.188 10 C -0.065 4.065 11 N -0.194 5.194 12 C -0.047 4.047 13 N -0.855 5.855 14 S 2.796 3.204 15 O -0.932 6.932 16 O -0.977 6.977 17 N -0.838 5.838 18 C -0.052 4.052 19 C 0.137 3.863 20 C -0.566 4.566 21 H 0.078 0.922 22 C -0.139 4.139 23 N -0.536 5.536 24 Si 0.723 3.277 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.208 1.208 28 C 0.000 4.000 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.057 0.943 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.717 -1.892 4.317 17.368 hybrid contribution 1.574 0.836 0.216 1.795 sum -15.143 -1.056 4.533 15.842 Atomic orbital electron populations 1.21705 0.93955 1.02194 1.02019 1.22394 0.95854 0.99668 0.94385 0.89405 1.22763 0.94253 1.00092 0.98130 1.20115 0.99027 0.92027 0.79800 0.89228 1.21067 0.98666 0.96866 0.97273 1.21408 0.94170 0.97525 0.94904 1.22072 1.01236 0.93577 1.01896 1.22683 0.92996 0.99476 0.91331 1.67632 1.15592 1.23046 1.13114 1.22393 0.97007 0.87371 0.97950 1.59664 1.25726 1.84259 1.15841 1.01894 0.71947 0.73918 0.72628 1.93651 1.63997 1.63046 1.72540 1.93524 1.79026 1.82279 1.42888 1.57715 1.44912 1.42707 1.38487 1.21350 1.01004 0.94341 0.88498 1.19033 0.82422 0.96744 0.88114 1.21518 0.91283 1.36373 1.07423 0.92216 1.24908 0.99204 0.94953 0.94827 1.69924 1.27130 1.41142 1.15361 0.86478 0.83199 0.78565 0.79460 1.19629 1.20907 1.20775 1.22013 0.82984 0.97858 0.97157 0.92244 0.92261 0.92321 0.89888 0.90407 0.84625 0.84845 0.83089 0.83734 0.94315 0.90337 0.91708 0.94828 0.94641 0.92771 0.91509 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.31 37.16 0.35 -0.65 16 2 C -0.10 -0.94 3.64 -88.47 -0.32 -1.26 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.11 -1.11 5.92 -24.90 -0.15 -1.26 16 5 C 0.20 2.73 3.28 -67.94 -0.22 2.50 16 6 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 7 C -0.14 -2.07 3.43 -104.48 -0.36 -2.43 16 8 C -0.05 -0.78 9.83 -39.28 -0.39 -1.17 16 9 C -0.17 -2.27 10.11 -39.44 -0.40 -2.66 16 10 C 0.09 1.31 11.18 -17.55 -0.20 1.11 16 11 N -0.49 -8.04 10.36 -13.26 -0.14 -8.18 16 12 C 0.11 1.78 10.23 -17.55 -0.18 1.60 16 13 N -1.02 -15.67 2.75 -105.42 -0.29 -15.96 16 14 S 2.79 57.21 6.27 -107.50 -0.67 56.54 16 15 O -0.95 -23.02 15.27 -57.17 -0.87 -23.89 16 16 O -0.99 -21.48 16.33 -57.17 -0.93 -22.41 16 17 N -1.00 -20.98 3.23 -123.05 -0.40 -21.38 16 18 C 0.09 1.65 10.68 59.85 0.64 2.29 16 19 C 0.26 6.45 5.08 -5.19 -0.03 6.42 16 20 C -0.53 -14.84 9.38 -34.44 -0.32 -15.16 16 21 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 24 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.13 1.48 6.45 -2.53 -0.02 1.46 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.07 -51.92 -0.42 -0.01 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 34 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.15 2.19 7.73 -52.49 -0.41 1.78 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 40 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 41 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 42 H 0.04 0.93 7.61 -51.93 -0.40 0.54 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -35.08 381.82 -10.53 -45.61 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.01 Total: -0.39 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.69 Total: -7.50 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -0.09 Total: -70.63 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.81 Total: -46.30 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 57.21 SS G_CDS: -0.67 Total: 56.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.08 -10.53 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330853067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.043 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds