Wall clock time and date at job start Wed Apr 1 2020 00:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.88496 * 2 1 4 4 C 1.55153 * 111.00826 * 123.88358 * 2 1 3 5 5 C 1.54323 * 103.10236 * 153.48934 * 4 2 1 6 6 H 1.09000 * 109.88167 * 97.31380 * 5 4 2 7 7 C 1.50703 * 109.88051 * 218.47902 * 5 4 2 8 8 C 1.38673 * 120.41610 * 258.54342 * 7 5 4 9 9 C 1.38630 * 118.41645 * 180.02562 * 8 7 5 10 10 C 1.38225 * 119.16351 * 359.97438 * 9 8 7 11 11 N 1.31851 * 120.76310 * 0.02562 * 10 9 8 12 12 C 1.31889 * 121.72864 * 359.70565 * 11 10 9 13 13 N 1.47317 * 107.12157 * 338.02434 * 5 4 2 14 14 S 1.65595 * 125.61965 * 178.81830 * 13 5 4 15 15 O 1.42102 * 106.40103 * 23.37512 * 14 13 5 16 16 O 1.42100 * 106.40897 * 156.29824 * 14 13 5 17 17 N 1.65604 * 107.21875 * 269.83803 * 14 13 5 18 18 C 1.46497 * 120.00321 * 269.99925 * 17 14 13 19 19 C 1.46502 * 120.00022 * 89.99685 * 17 14 13 20 20 C 1.50701 * 109.47254 * 95.00152 * 19 17 14 21 21 H 1.08001 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.37871 * 120.00017 * 179.97438 * 20 19 17 23 23 N 1.31521 * 120.00115 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00195 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46747 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47239 * 119.99827 * 24 22 20 27 27 H 1.48506 * 109.47266 * 240.00487 * 24 22 20 28 28 C 1.47427 * 108.73481 * 358.69551 * 13 5 4 29 29 H 1.08995 * 109.47091 * 296.11171 * 1 2 3 30 30 H 1.08997 * 109.47530 * 56.11897 * 1 2 3 31 31 H 1.09011 * 109.46565 * 176.11952 * 1 2 3 32 32 H 1.09002 * 110.72030 * 271.94200 * 4 2 1 33 33 H 1.09003 * 110.72184 * 35.03851 * 4 2 1 34 34 H 1.07992 * 120.79144 * 359.97438 * 8 7 5 35 35 H 1.08007 * 120.41652 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.61411 * 179.97438 * 10 9 8 37 37 H 1.07990 * 119.62179 * 180.30715 * 12 11 10 38 38 H 1.09001 * 109.47188 * 89.98979 * 18 17 14 39 39 H 1.08998 * 109.47701 * 209.99687 * 18 17 14 40 40 H 1.09002 * 109.46630 * 330.00144 * 18 17 14 41 41 H 1.09004 * 109.47076 * 215.00745 * 19 17 14 42 42 H 1.09005 * 109.46750 * 335.00177 * 19 17 14 43 43 H 0.96997 * 119.99673 * 179.97438 * 23 22 20 44 44 H 1.08996 * 110.37285 * 265.44500 * 28 13 5 45 45 H 1.09002 * 110.36636 * 143.12253 * 28 13 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 1.2024 5 6 3.4672 -1.2777 0.6992 6 1 4.2435 -0.6051 1.0642 7 6 3.7357 -2.6818 1.1763 8 6 4.5704 -2.9074 2.2605 9 6 4.7889 -4.2155 2.6639 10 6 4.1715 -5.2442 1.9773 11 7 3.3839 -4.9923 0.9504 12 6 3.1491 -3.7603 0.5421 13 7 3.4272 -1.2432 -0.7730 14 16 4.6815 -1.6331 -1.7813 15 8 5.5403 -2.4895 -1.0408 16 8 4.0983 -2.0025 -3.0233 17 7 5.5360 -0.2425 -2.0613 18 6 5.1820 0.6199 -3.1914 19 6 6.6460 0.1255 -1.1788 20 6 7.9424 -0.3635 -1.7715 21 1 7.9398 -0.8949 -2.7118 22 6 9.1318 -0.1317 -1.1139 23 7 9.1351 0.5158 0.0309 24 14 10.7389 -0.7372 -1.8489 25 1 10.4653 -1.4321 -3.1325 26 1 11.6382 0.4190 -2.0932 27 1 11.3905 -1.6806 -0.9051 28 6 2.0852 -0.8070 -1.2001 29 1 -0.3633 0.4523 0.9227 30 1 -0.3634 0.5729 -0.8531 31 1 -0.3633 -1.0254 -0.0696 32 1 2.1922 -0.1692 2.0796 33 1 1.4452 -1.6610 1.4234 34 1 5.0396 -2.0836 2.7777 35 1 5.4327 -4.4282 3.5046 36 1 4.3370 -6.2661 2.2851 37 1 2.4941 -3.5928 -0.2999 38 1 4.4434 1.3545 -2.8705 39 1 6.0739 1.1340 -3.5496 40 1 4.7650 0.0128 -3.9949 41 1 6.6813 1.2097 -1.0721 42 1 6.4988 -0.3313 -0.2001 43 1 9.9719 0.6785 0.4936 44 1 1.4519 -1.6708 -1.4020 45 1 2.1559 -0.1726 -2.0837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330853067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:26 Heat of formation + Delta-G solvation = -58.313983 kcal Electronic energy + Delta-G solvation = -29190.175507 eV Core-core repulsion = 25333.489908 eV Total energy + Delta-G solvation = -3856.685599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.39711 -39.48823 -38.33710 -37.25430 -36.86779 -34.53585 -34.23655 -33.27567 -32.35145 -29.72991 -29.57676 -27.05015 -26.71985 -24.70757 -24.52138 -24.16414 -22.31141 -21.28644 -19.95611 -19.04990 -18.55394 -18.35720 -17.95794 -17.47784 -17.10074 -16.60972 -16.30984 -16.03478 -15.22904 -15.19377 -14.96723 -14.80938 -14.55531 -14.33904 -14.10956 -14.02509 -13.95951 -13.83881 -13.60484 -13.36103 -13.20746 -13.10463 -13.07062 -12.98019 -12.74160 -12.52931 -12.50490 -12.41440 -12.02955 -11.90391 -11.76309 -11.61028 -11.58300 -10.70158 -10.63488 -10.54197 -10.16087 -9.86968 -9.74696 -8.23846 -6.35012 -0.45825 0.17210 0.36502 1.34719 1.37446 1.48721 2.00448 2.36638 2.53490 2.86052 3.07067 3.17686 3.44596 3.60953 3.66873 3.82033 3.97887 4.01294 4.04912 4.11436 4.15906 4.38143 4.52903 4.58564 4.61846 4.66237 4.68431 4.73136 4.82386 4.86185 4.94914 4.98419 5.01503 5.08295 5.13747 5.18227 5.21317 5.31009 5.36957 5.42022 5.47900 5.57592 5.66934 5.78845 5.91045 6.07704 6.72200 7.00573 7.33732 8.83813 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.005098 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.853118 B = 5490.574857 C = 6770.375396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.094 0.906 4 C -0.103 4.103 5 C 0.192 3.808 6 H 0.080 0.920 7 C -0.144 4.144 8 C -0.073 4.073 9 C -0.166 4.166 10 C 0.080 3.920 11 N -0.511 5.511 12 C 0.090 3.910 13 N -1.013 6.013 14 S 2.799 3.201 15 O -0.994 6.994 16 O -1.010 7.010 17 N -1.004 6.004 18 C 0.088 3.912 19 C 0.277 3.723 20 C -0.549 4.549 21 H 0.045 0.955 22 C 0.018 3.982 23 N -0.920 5.920 24 Si 0.951 3.049 25 H -0.274 1.274 26 H -0.267 1.267 27 H -0.278 1.278 28 C 0.112 3.888 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.181 0.819 37 H 0.145 0.855 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.017 0.983 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.674 0.309 5.740 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.112 0.888 4 C -0.142 4.142 5 C 0.085 3.915 6 H 0.098 0.902 7 C -0.147 4.147 8 C -0.100 4.100 9 C -0.186 4.186 10 C -0.077 4.077 11 N -0.220 5.220 12 C -0.067 4.067 13 N -0.853 5.853 14 S 2.810 3.190 15 O -0.978 6.978 16 O -0.994 6.994 17 N -0.846 5.846 18 C -0.058 4.058 19 C 0.153 3.847 20 C -0.589 4.589 21 H 0.064 0.936 22 C -0.182 4.182 23 N -0.559 5.559 24 Si 0.776 3.224 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.204 1.204 28 C -0.012 4.012 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.166 0.834 35 H 0.182 0.818 36 H 0.198 0.802 37 H 0.162 0.838 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.680 -1.190 4.971 18.404 hybrid contribution 1.814 0.601 0.028 1.911 sum -15.866 -0.588 4.999 16.645 Atomic orbital electron populations 1.21687 0.91923 1.02635 1.03157 1.22381 0.97287 0.99180 0.92306 0.88813 1.22772 0.91655 1.00708 0.99016 1.20356 1.01278 0.91320 0.78577 0.90227 1.21246 0.98660 0.97313 0.97491 1.21765 0.94307 0.98692 0.95207 1.22458 1.00827 0.92942 1.02340 1.23243 0.92452 1.01222 0.90776 1.67613 1.16748 1.23389 1.14286 1.22473 0.97932 0.87781 0.98519 1.59197 1.25773 1.84004 1.16288 1.01156 0.72065 0.73473 0.72307 1.93583 1.66055 1.64766 1.73348 1.93489 1.79197 1.82596 1.44109 1.57630 1.44641 1.43180 1.39141 1.21574 1.01732 0.94724 0.87748 1.18577 0.82554 0.95799 0.87741 1.21807 0.93167 1.36661 1.07218 0.93630 1.25647 1.02233 0.95060 0.95254 1.69992 1.28190 1.41642 1.16122 0.85617 0.79682 0.78552 0.78535 1.19880 1.19165 1.20380 1.22405 0.81141 0.98858 0.98806 0.90872 0.91411 0.92232 0.87740 0.89777 0.83381 0.81787 0.80180 0.83787 0.90668 0.90978 0.91148 0.95357 0.96503 0.92290 0.90704 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.31 71.98 0.67 -0.83 16 2 C -0.09 -1.44 3.64 -9.40 -0.03 -1.48 16 3 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.10 -1.80 5.92 31.78 0.19 -1.62 16 5 C 0.19 5.21 3.28 44.54 0.15 5.35 16 6 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 7 C -0.14 -4.41 3.43 -19.77 -0.07 -4.47 16 8 C -0.07 -2.12 9.83 22.47 0.22 -1.90 16 9 C -0.17 -4.32 10.11 22.36 0.23 -4.10 16 10 C 0.08 2.21 11.18 84.69 0.95 3.16 16 11 N -0.51 -17.05 10.36 -195.85 -2.03 -19.08 16 12 C 0.09 2.94 10.23 84.67 0.87 3.81 16 13 N -1.01 -30.88 2.75 -487.45 -1.34 -32.23 16 14 S 2.80 116.84 6.27 -56.49 -0.35 116.48 16 15 O -0.99 -49.86 15.27 -128.00 -1.95 -51.81 16 16 O -1.01 -44.09 16.33 -128.00 -2.09 -46.18 16 17 N -1.00 -42.74 3.23 -543.21 -1.75 -44.49 16 18 C 0.09 3.01 10.68 127.77 1.36 4.37 16 19 C 0.28 14.08 5.08 85.63 0.43 14.52 16 20 C -0.55 -31.52 9.38 25.60 0.24 -31.28 16 21 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 22 C 0.02 1.02 5.46 84.65 0.46 1.48 16 23 N -0.92 -53.25 13.29 21.45 0.28 -52.96 16 24 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 25 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 C 0.11 2.48 6.45 86.86 0.56 3.04 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.07 -2.38 -0.02 0.64 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.41 7.68 -2.39 -0.02 1.39 16 34 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.14 4.49 7.73 -2.92 -0.02 4.46 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 40 H 0.07 2.32 7.02 -2.39 -0.02 2.30 16 41 H 0.03 1.45 8.11 -2.38 -0.02 1.43 16 42 H 0.02 0.92 7.61 -2.38 -0.02 0.90 16 43 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.07 1.54 7.98 -2.39 -0.02 1.52 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.75 381.82 -0.02 -76.77 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.97 Total: 16.44 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 6.22 Total: -9.93 kcal Atomic # 7 Polarization: -143.92 SS G_CDS: -4.84 Total: -148.76 kcal Atomic # 8 Polarization: -93.95 SS G_CDS: -4.04 Total: -97.99 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 116.84 SS G_CDS: -0.35 Total: 116.48 kcal Total: -76.75 -0.02 -76.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330853067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.452 kcal (2) G-P(sol) polarization free energy of solvation -76.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds