Wall clock time and date at job start Wed Apr 1 2020 00:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53003 * 109.46700 * 2 1 4 4 O 1.42897 * 109.47065 * 120.00146 * 2 1 3 5 5 C 1.35967 * 117.00049 * 146.13129 * 4 2 1 6 6 C 1.38722 * 119.97726 * 6.09345 * 5 4 2 7 7 C 1.38133 * 120.05338 * 179.97438 * 6 5 4 8 8 C 1.38773 * 120.00985 * 0.02562 * 7 6 5 9 9 N 1.40279 * 120.02374 * 179.97438 * 8 7 6 10 10 C 1.34782 * 119.99755 * 34.60262 * 9 8 7 11 11 O 1.21592 * 120.00133 * 355.61945 * 10 9 8 12 12 N 1.34779 * 119.99870 * 175.61760 * 10 9 8 13 13 C 1.46492 * 119.99799 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47054 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99682 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00203 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99852 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00548 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99466 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00485 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99598 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47103 * 60.00164 * 21 19 17 23 23 H 1.48503 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47121 * 300.00006 * 21 19 17 25 25 C 1.39023 * 119.95487 * 0.02562 * 8 7 6 26 26 F 1.35098 * 120.02611 * 179.97438 * 25 8 7 27 27 C 1.38288 * 119.94524 * 359.72495 * 25 8 7 28 28 H 1.08999 * 109.46976 * 59.99858 * 1 2 3 29 29 H 1.08994 * 109.47097 * 299.99393 * 1 2 3 30 30 H 1.08999 * 109.46628 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46955 * 240.00344 * 2 1 3 32 32 H 1.09008 * 109.46697 * 60.00396 * 3 2 1 33 33 H 1.08993 * 109.46716 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47274 * 300.00217 * 3 2 1 35 35 H 1.07995 * 119.97673 * 359.97335 * 6 5 4 36 36 H 1.07994 * 119.99399 * 180.02562 * 7 6 5 37 37 H 0.97002 * 120.00294 * 214.60265 * 9 8 7 38 38 H 0.97001 * 119.99476 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47479 * 299.99596 * 13 12 10 40 40 H 1.09001 * 109.47699 * 59.99617 * 13 12 10 41 41 H 0.96999 * 119.99530 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00505 * 179.97438 * 20 19 17 43 43 H 1.07993 * 120.00286 * 180.29831 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1606 -1.3817 1.0428 6 6 3.8857 -1.3239 -0.1384 7 6 5.0587 -2.0422 -0.2658 8 6 5.5125 -2.8229 0.7879 9 7 6.7035 -3.5528 0.6586 10 6 7.7262 -3.0515 -0.0619 11 8 7.5893 -2.0047 -0.6652 12 7 8.9008 -3.7105 -0.1137 13 6 10.0126 -3.1653 -0.8964 14 6 11.2013 -4.0855 -0.7890 15 8 11.1270 -5.0969 -0.1236 16 7 12.3468 -3.7846 -1.4322 17 6 13.4282 -4.6214 -1.3340 18 1 13.3625 -5.5216 -0.7410 19 6 14.6090 -4.3114 -1.9977 20 7 14.6893 -3.2159 -2.7189 21 14 16.0824 -5.4520 -1.8645 22 1 15.7187 -6.7935 -2.3872 23 1 17.2093 -4.8997 -2.6585 24 1 16.4907 -5.5692 -0.4416 25 6 4.7855 -2.8819 1.9715 26 9 5.2257 -3.6418 2.9980 27 6 3.6142 -2.1580 2.0989 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.5330 -0.7169 -0.9590 36 1 5.6227 -1.9962 -1.1856 37 1 6.7909 -4.4183 1.0878 38 1 9.0101 -4.5453 0.3680 39 1 9.7134 -3.0782 -1.9409 40 1 10.2797 -2.1810 -0.5117 41 1 12.4062 -2.9755 -1.9640 42 1 15.5137 -2.9993 -3.1819 43 1 3.0512 -2.1994 3.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349053301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:45 Heat of formation + Delta-G solvation = -120.476366 kcal Electronic energy + Delta-G solvation = -28054.810342 eV Core-core repulsion = 23629.216004 eV Total energy + Delta-G solvation = -4425.594338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.12053 -40.82806 -40.07563 -38.45273 -37.60713 -34.76641 -34.50498 -33.78936 -33.28708 -31.41342 -30.86530 -29.18253 -27.72225 -27.21806 -24.59382 -23.78533 -23.21145 -21.20510 -20.82524 -19.66899 -19.06233 -18.52881 -18.14692 -17.56620 -16.74845 -16.47170 -16.06261 -15.64819 -15.49662 -15.42118 -15.33769 -14.97521 -14.66208 -14.19822 -14.13525 -14.07587 -14.02603 -13.54149 -13.31987 -13.07655 -13.02005 -12.66982 -12.47199 -12.24729 -12.18728 -11.97150 -11.87374 -11.65199 -11.32421 -11.12344 -10.97695 -10.52528 -10.34568 -10.23720 -9.94463 -9.65376 -9.11123 -8.94067 -8.67362 -8.13183 -7.91836 -6.53882 -3.96120 0.86147 1.05047 2.51077 2.74352 3.05997 3.12430 3.20374 3.24177 3.45741 3.71064 4.02296 4.05957 4.22780 4.30520 4.46114 4.55309 4.61705 4.73474 4.83030 4.89610 5.10759 5.11770 5.14552 5.29234 5.30837 5.32644 5.43461 5.64052 5.72867 5.78271 5.83529 5.91907 5.94897 6.01800 6.07897 6.16732 6.58858 6.62482 6.85256 7.09144 7.43521 7.88950 7.98576 8.41565 8.54244 9.01797 9.35923 9.83662 10.62776 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.001803 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.838564 B =15527.616811 C =16379.720644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.073 3.927 3 C -0.177 4.177 4 O -0.308 6.308 5 C 0.140 3.860 6 C -0.201 4.201 7 C -0.052 4.052 8 C 0.107 3.893 9 N -0.684 5.684 10 C 0.707 3.293 11 O -0.582 6.582 12 N -0.716 5.716 13 C 0.128 3.872 14 C 0.427 3.573 15 O -0.598 6.598 16 N -0.547 5.547 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.027 3.973 20 N -0.894 5.894 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.109 3.891 26 F -0.131 7.131 27 C -0.173 4.173 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.139 0.861 36 H 0.157 0.843 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.244 6.487 4.184 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 C -0.235 4.235 4 O -0.222 6.222 5 C 0.094 3.906 6 C -0.220 4.220 7 C -0.072 4.072 8 C 0.010 3.990 9 N -0.333 5.333 10 C 0.407 3.593 11 O -0.460 6.460 12 N -0.373 5.373 13 C -0.001 4.001 14 C 0.212 3.788 15 O -0.484 6.484 16 N -0.182 5.182 17 C -0.436 4.436 18 H 0.123 0.877 19 C -0.176 4.176 20 N -0.534 5.534 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C 0.086 3.914 26 F -0.110 7.110 27 C -0.193 4.193 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.156 0.844 36 H 0.175 0.825 37 H 0.246 0.754 38 H 0.247 0.753 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -26.210 6.832 4.129 27.399 hybrid contribution 1.154 -0.871 0.167 1.455 sum -25.057 5.961 4.296 26.112 Atomic orbital electron populations 1.21908 0.92634 1.03180 1.03107 1.22547 0.95301 0.92911 0.87559 1.22320 1.02414 0.95570 1.03159 1.86121 1.36804 1.62208 1.37054 1.18531 0.86610 0.91969 0.93494 1.21247 0.97211 1.05308 0.98227 1.21112 0.93790 0.93957 0.98379 1.17381 0.88150 1.00321 0.93118 1.42406 1.12344 1.22731 1.55802 1.15764 0.80048 0.83456 0.80021 1.90891 1.82517 1.23614 1.48946 1.44765 1.10627 1.27915 1.53964 1.20850 0.85609 0.97193 0.96399 1.19712 0.84773 0.88451 0.85829 1.90499 1.83459 1.28827 1.45648 1.41770 1.10084 1.23452 1.42872 1.19686 0.89298 1.05207 1.29410 0.87696 1.25329 0.99315 0.97073 0.95926 1.69600 1.28800 1.24136 1.30850 0.85862 0.79751 0.79749 0.78546 1.19768 1.20837 1.19768 1.17022 0.95389 0.95520 0.83419 1.91504 1.89109 1.73383 1.57003 1.19983 0.97557 1.01123 1.00597 0.90494 0.91448 0.91658 0.90255 0.91404 0.91632 0.90865 0.84365 0.82546 0.75386 0.75254 0.89712 0.89733 0.76994 0.91496 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.56 37.16 0.36 -0.39 16 2 C 0.07 0.48 2.82 -26.72 -0.08 0.41 16 3 C -0.18 -1.06 9.46 37.16 0.35 -0.71 16 4 O -0.31 -2.88 9.78 -19.64 -0.19 -3.07 16 5 C 0.14 1.43 6.67 -39.23 -0.26 1.17 16 6 C -0.20 -2.02 8.81 -39.44 -0.35 -2.37 16 7 C -0.05 -0.63 8.70 -39.42 -0.34 -0.97 16 8 C 0.11 1.35 6.32 -83.50 -0.53 0.82 16 9 N -0.68 -8.81 5.24 -14.12 -0.07 -8.88 16 10 C 0.71 11.12 8.41 -86.91 -0.73 10.38 16 11 O -0.58 -10.47 13.76 5.28 0.07 -10.40 16 12 N -0.72 -11.62 5.53 -66.41 -0.37 -11.98 16 13 C 0.13 2.28 6.15 -5.20 -0.03 2.25 16 14 C 0.43 9.59 7.85 -10.98 -0.09 9.50 16 15 O -0.60 -15.03 15.24 5.55 0.08 -14.95 16 16 N -0.55 -13.34 5.29 -10.96 -0.06 -13.40 16 17 C -0.31 -8.24 9.68 -14.93 -0.14 -8.38 16 18 H 0.11 2.93 7.16 -52.49 -0.38 2.56 16 19 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.59 13.05 55.50 0.72 -22.87 16 21 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 C 0.11 1.27 7.31 -39.27 -0.29 0.98 16 26 F -0.13 -1.56 16.95 2.25 0.04 -1.52 16 27 C -0.17 -1.81 9.96 -39.39 -0.39 -2.21 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.47 5.77 -51.93 -0.30 0.17 16 32 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.06 0.46 8.00 -51.93 -0.42 0.05 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.14 1.09 5.84 -52.49 -0.31 0.79 16 36 H 0.16 2.09 6.19 -52.49 -0.32 1.76 16 37 H 0.41 4.37 8.68 -40.82 -0.35 4.01 16 38 H 0.41 6.48 7.46 -40.82 -0.30 6.18 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.40 9.27 7.90 -40.82 -0.32 8.94 16 42 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -31.20 373.26 -7.01 -38.21 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -5.22 Total: 16.83 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -2.62 Total: 11.07 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.22 Total: -57.13 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.03 Total: -28.41 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.20 -7.01 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349053301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.268 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds