Wall clock time and date at job start Wed Apr 1 2020 00:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53003 * 109.46700 * 2 1 4 4 O 1.42897 * 109.47065 * 120.00146 * 2 1 3 5 5 C 1.35967 * 117.00049 * 146.13129 * 4 2 1 6 6 C 1.38722 * 119.97726 * 6.09345 * 5 4 2 7 7 C 1.38133 * 120.05338 * 179.97438 * 6 5 4 8 8 C 1.38773 * 120.00985 * 0.02562 * 7 6 5 9 9 N 1.40279 * 120.02374 * 179.97438 * 8 7 6 10 10 C 1.34782 * 119.99755 * 34.60262 * 9 8 7 11 11 O 1.21592 * 120.00133 * 355.61945 * 10 9 8 12 12 N 1.34779 * 119.99870 * 175.61760 * 10 9 8 13 13 C 1.46492 * 119.99799 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47054 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99682 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00203 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99852 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00548 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99466 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00485 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99598 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47103 * 60.00164 * 21 19 17 23 23 H 1.48503 * 109.46969 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47121 * 300.00006 * 21 19 17 25 25 C 1.39023 * 119.95487 * 0.02562 * 8 7 6 26 26 F 1.35098 * 120.02611 * 179.97438 * 25 8 7 27 27 C 1.38288 * 119.94524 * 359.72495 * 25 8 7 28 28 H 1.08999 * 109.46976 * 59.99858 * 1 2 3 29 29 H 1.08994 * 109.47097 * 299.99393 * 1 2 3 30 30 H 1.08999 * 109.46628 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46955 * 240.00344 * 2 1 3 32 32 H 1.09008 * 109.46697 * 60.00396 * 3 2 1 33 33 H 1.08993 * 109.46716 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47274 * 300.00217 * 3 2 1 35 35 H 1.07995 * 119.97673 * 359.97335 * 6 5 4 36 36 H 1.07994 * 119.99399 * 180.02562 * 7 6 5 37 37 H 0.97002 * 120.00294 * 214.60265 * 9 8 7 38 38 H 0.97001 * 119.99476 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47479 * 299.99596 * 13 12 10 40 40 H 1.09001 * 109.47699 * 59.99617 * 13 12 10 41 41 H 0.96999 * 119.99530 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00505 * 179.97438 * 20 19 17 43 43 H 1.07993 * 120.00286 * 180.29831 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1606 -1.3817 1.0428 6 6 3.8857 -1.3239 -0.1384 7 6 5.0587 -2.0422 -0.2658 8 6 5.5125 -2.8229 0.7879 9 7 6.7035 -3.5528 0.6586 10 6 7.7262 -3.0515 -0.0619 11 8 7.5893 -2.0047 -0.6652 12 7 8.9008 -3.7105 -0.1137 13 6 10.0126 -3.1653 -0.8964 14 6 11.2013 -4.0855 -0.7890 15 8 11.1270 -5.0969 -0.1236 16 7 12.3468 -3.7846 -1.4322 17 6 13.4282 -4.6214 -1.3340 18 1 13.3625 -5.5216 -0.7410 19 6 14.6090 -4.3114 -1.9977 20 7 14.6893 -3.2159 -2.7189 21 14 16.0824 -5.4520 -1.8645 22 1 15.7187 -6.7935 -2.3872 23 1 17.2093 -4.8997 -2.6585 24 1 16.4907 -5.5692 -0.4416 25 6 4.7855 -2.8819 1.9715 26 9 5.2257 -3.6418 2.9980 27 6 3.6142 -2.1580 2.0989 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.5330 -0.7169 -0.9590 36 1 5.6227 -1.9962 -1.1856 37 1 6.7909 -4.4183 1.0878 38 1 9.0101 -4.5453 0.3680 39 1 9.7134 -3.0782 -1.9409 40 1 10.2797 -2.1810 -0.5117 41 1 12.4062 -2.9755 -1.9640 42 1 15.5137 -2.9993 -3.1819 43 1 3.0512 -2.1994 3.0196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349053301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:44 Heat of formation + Delta-G solvation = -141.897525 kcal Electronic energy + Delta-G solvation = -28055.739233 eV Core-core repulsion = 23629.216004 eV Total energy + Delta-G solvation = -4426.523229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.03976 -41.84887 -41.05117 -40.14742 -38.59094 -36.27673 -35.71513 -35.37834 -33.94035 -33.36848 -31.71053 -30.28878 -28.68743 -28.09118 -26.39238 -24.60829 -24.13776 -22.10174 -21.81079 -21.38248 -20.16873 -19.97797 -19.47543 -18.69465 -17.71112 -17.40789 -17.29187 -16.94966 -16.74017 -16.62001 -16.35771 -16.13975 -15.91695 -15.76380 -15.61410 -15.22364 -14.89684 -14.66663 -14.12500 -13.98409 -13.87606 -13.72803 -13.57873 -13.53493 -13.19210 -13.05964 -12.90499 -12.73510 -12.58259 -12.46699 -12.13511 -11.98032 -11.61243 -11.56161 -11.39350 -10.93827 -10.56591 -10.27763 -10.08759 -9.97801 -8.83580 -8.50685 -6.00892 -0.01031 0.15869 1.33003 1.38400 1.44181 1.54682 1.86348 1.94256 2.06116 2.28252 2.52925 2.92336 3.16456 3.16609 3.19760 3.69263 3.78035 3.93574 4.02346 4.09703 4.19274 4.22965 4.27193 4.39180 4.45002 4.48977 4.74223 4.84170 4.86417 4.90803 4.97119 5.02965 5.14450 5.21508 5.27273 5.29807 5.33581 5.38644 5.68749 5.74475 5.92092 6.36932 6.48160 6.79064 7.03728 7.29633 7.44778 7.94673 8.65788 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.001803 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.838564 B =15527.616811 C =16379.720644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 C -0.176 4.176 4 O -0.316 6.316 5 C 0.145 3.855 6 C -0.193 4.193 7 C -0.061 4.061 8 C 0.085 3.915 9 N -0.673 5.673 10 C 0.709 3.291 11 O -0.605 6.605 12 N -0.717 5.717 13 C 0.142 3.858 14 C 0.432 3.568 15 O -0.625 6.625 16 N -0.558 5.558 17 C -0.339 4.339 18 H 0.086 0.914 19 C -0.009 4.009 20 N -0.915 5.915 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.271 1.271 25 C 0.106 3.894 26 F -0.134 7.134 27 C -0.173 4.173 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.420 0.580 38 H 0.412 0.588 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.400 0.600 42 H 0.280 0.720 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.515 7.060 4.053 28.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 C -0.233 4.233 4 O -0.230 6.230 5 C 0.098 3.902 6 C -0.212 4.212 7 C -0.082 4.082 8 C -0.011 4.011 9 N -0.322 5.322 10 C 0.410 3.590 11 O -0.484 6.484 12 N -0.373 5.373 13 C 0.014 3.986 14 C 0.219 3.781 15 O -0.513 6.513 16 N -0.193 5.193 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.210 4.210 20 N -0.555 5.555 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.196 1.196 25 C 0.084 3.916 26 F -0.113 7.113 27 C -0.193 4.193 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.258 0.742 38 H 0.250 0.750 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.234 0.766 42 H 0.089 0.911 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.525 7.408 4.012 28.785 hybrid contribution 1.370 -0.985 0.232 1.703 sum -26.155 6.424 4.243 27.264 Atomic orbital electron populations 1.21929 0.91230 1.03364 1.04035 1.22854 0.96417 0.93030 0.86923 1.22324 1.01596 0.95335 1.04056 1.86136 1.36147 1.62053 1.38630 1.18597 0.86826 0.91525 0.93235 1.21414 0.96278 1.04657 0.98882 1.21061 0.94581 0.94660 0.97891 1.17550 0.88287 1.01336 0.93919 1.42233 1.11851 1.23076 1.55079 1.15763 0.80152 0.83065 0.80052 1.90877 1.82928 1.24623 1.50016 1.44670 1.10533 1.28088 1.54056 1.20656 0.84158 0.96183 0.97640 1.20413 0.85269 0.88310 0.84097 1.90477 1.84134 1.30263 1.46424 1.41810 1.10345 1.23506 1.43651 1.19701 0.90900 1.05591 1.30627 0.89579 1.26110 1.01357 0.98409 0.95144 1.69665 1.29644 1.25091 1.31052 0.84935 0.76636 0.77891 0.78566 1.19509 1.19632 1.19597 1.17054 0.95690 0.95786 0.83074 1.91496 1.89221 1.73521 1.57050 1.20181 0.97147 1.00607 1.01362 0.88486 0.91622 0.91852 0.89446 0.91660 0.92853 0.88886 0.82280 0.83845 0.74242 0.75005 0.88296 0.88673 0.76616 0.91052 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.56 71.99 0.69 -0.44 16 2 C 0.06 0.70 2.82 30.60 0.09 0.79 16 3 C -0.18 -1.76 9.46 71.98 0.68 -1.08 16 4 O -0.32 -5.34 9.78 -93.18 -0.91 -6.25 16 5 C 0.14 2.74 6.67 22.50 0.15 2.89 16 6 C -0.19 -3.64 8.81 22.36 0.20 -3.45 16 7 C -0.06 -1.46 8.70 22.37 0.19 -1.27 16 8 C 0.08 2.10 6.32 38.10 0.24 2.34 16 9 N -0.67 -17.08 5.24 -316.85 -1.66 -18.74 16 10 C 0.71 22.00 8.41 179.05 1.51 23.50 16 11 O -0.60 -21.53 13.76 -4.01 -0.06 -21.58 16 12 N -0.72 -22.92 5.53 -482.29 -2.67 -25.59 16 13 C 0.14 4.99 6.15 85.64 0.53 5.52 16 14 C 0.43 19.51 7.85 87.66 0.69 20.20 16 15 O -0.62 -31.78 15.24 -3.05 -0.05 -31.82 16 16 N -0.56 -27.53 5.29 -306.98 -1.62 -29.15 16 17 C -0.34 -18.48 9.68 84.04 0.81 -17.66 16 18 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 19 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 20 N -0.91 -48.06 13.05 21.66 0.28 -47.78 16 21 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 C 0.11 2.39 7.31 22.47 0.16 2.56 16 26 F -0.13 -3.09 16.95 44.97 0.76 -2.33 16 27 C -0.17 -3.41 9.96 22.39 0.22 -3.19 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.83 5.77 -2.39 -0.01 0.82 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.05 0.67 8.00 -2.39 -0.02 0.65 16 34 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.16 2.22 5.84 -2.91 -0.02 2.20 16 36 H 0.14 3.82 6.19 -2.91 -0.02 3.80 16 37 H 0.42 8.77 8.68 -92.71 -0.80 7.97 16 38 H 0.41 12.94 7.46 -92.71 -0.69 12.25 16 39 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 42 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 43 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -66.12 373.26 1.61 -64.51 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -1.13 Total: 44.57 kcal Atomic # 6 Polarization: 24.08 SS G_CDS: 6.63 Total: 30.70 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -5.67 Total: -121.26 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -1.01 Total: -59.66 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.76 Total: -2.33 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -66.12 1.61 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349053301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.383 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds