Wall clock time and date at job start Wed Apr 1 2020 00:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46757 * 2 1 4 4 O 1.42898 * 109.47031 * 119.99731 * 2 1 3 5 5 C 1.35985 * 116.99855 * 155.04746 * 4 2 1 6 6 C 1.38534 * 120.06940 * 5.39816 * 5 4 2 7 7 C 1.38434 * 119.99488 * 179.97438 * 6 5 4 8 8 F 1.35097 * 119.93913 * 179.97438 * 7 6 5 9 9 C 1.38467 * 120.12082 * 359.97438 * 7 6 5 10 10 C 1.38213 * 120.13701 * 359.97438 * 9 7 6 11 11 C 1.38681 * 120.00997 * 0.02562 * 10 9 7 12 12 N 1.40281 * 120.06484 * 180.27518 * 11 10 9 13 13 C 1.34779 * 119.99822 * 326.23472 * 12 11 10 14 14 O 1.21596 * 119.99914 * 354.18015 * 13 12 11 15 15 N 1.34771 * 120.00078 * 174.18933 * 13 12 11 16 16 C 1.46501 * 120.00175 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47297 * 179.97438 * 16 15 13 18 18 O 1.21297 * 119.99856 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00206 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00443 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99623 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00286 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99908 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99967 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.46784 * 89.99811 * 24 22 20 26 26 H 1.48492 * 109.46956 * 209.99778 * 24 22 20 27 27 H 1.48500 * 109.46975 * 330.00037 * 24 22 20 28 28 H 1.08991 * 109.47438 * 300.00029 * 1 2 3 29 29 H 1.08999 * 109.47015 * 60.00444 * 1 2 3 30 30 H 1.08999 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47639 * 240.00036 * 2 1 3 32 32 H 1.09000 * 109.46623 * 60.00024 * 3 2 1 33 33 H 1.09000 * 109.47337 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47053 * 300.00109 * 3 2 1 35 35 H 1.08002 * 120.00242 * 359.95289 * 6 5 4 36 36 H 1.07997 * 119.93129 * 180.02562 * 9 7 6 37 37 H 1.08006 * 119.99389 * 180.02562 * 10 9 7 38 38 H 0.96996 * 120.00257 * 146.23381 * 12 11 10 39 39 H 0.96999 * 120.00421 * 359.97438 * 15 13 12 40 40 H 1.09001 * 109.46865 * 299.99821 * 16 15 13 41 41 H 1.08996 * 109.47333 * 59.99607 * 16 15 13 42 42 H 0.96996 * 120.00079 * 0.02562 * 19 17 16 43 43 H 0.96996 * 120.00027 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2478 -1.2242 1.0982 6 6 4.0351 -1.0235 -0.0239 7 6 5.2989 -1.5843 -0.0919 8 9 6.0655 -1.3884 -1.1870 9 6 5.7788 -2.3458 0.9604 10 6 4.9982 -2.5484 2.0828 11 6 3.7313 -1.9892 2.1568 12 7 2.9403 -2.1894 3.2979 13 6 3.0163 -3.3522 3.9750 14 8 3.6890 -4.2666 3.5393 15 7 2.3464 -3.5017 5.1349 16 6 2.4295 -4.7655 5.8712 17 6 1.5966 -4.6729 7.1237 18 8 0.9933 -3.6514 7.3766 19 7 1.5220 -5.7249 7.9627 20 6 0.7647 -5.6406 9.1024 21 1 0.2276 -4.7311 9.3277 22 6 0.6882 -6.7251 9.9677 23 7 -0.0381 -6.6443 11.0598 24 14 1.6179 -8.2979 9.5784 25 1 2.9747 -8.2321 10.1781 26 1 0.8835 -9.4592 10.1416 27 1 1.7343 -8.4525 8.1061 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.1299 1.4427 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.6627 -0.4299 -0.8458 36 1 6.7653 -2.7815 0.9042 37 1 5.3749 -3.1424 2.9024 38 1 2.3387 -1.4909 3.5997 39 1 1.8099 -2.7722 5.4827 40 1 2.0560 -5.5759 5.2452 41 1 3.4675 -4.9623 6.1393 42 1 2.0047 -6.5416 7.7606 43 1 -0.0912 -7.4012 11.6641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350811292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:55 Heat of formation + Delta-G solvation = -115.524573 kcal Electronic energy + Delta-G solvation = -28510.373908 eV Core-core repulsion = 24084.994296 eV Total energy + Delta-G solvation = -4425.379612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.11224 -41.08460 -39.91238 -38.56018 -37.69183 -34.80391 -34.56164 -33.81477 -33.48293 -31.83068 -30.64544 -29.35140 -27.71467 -27.43594 -24.49543 -24.06607 -22.66486 -21.55603 -20.75254 -19.70462 -19.08080 -18.90912 -18.29935 -17.56197 -17.00662 -16.22771 -16.07415 -15.68253 -15.64080 -15.51164 -15.27065 -14.93872 -14.82889 -14.60044 -14.26889 -14.13140 -13.68239 -13.51187 -13.18510 -13.13070 -13.09178 -12.69567 -12.53632 -12.33794 -12.26973 -12.19398 -12.05067 -11.73531 -11.33328 -11.25655 -11.05535 -10.66140 -10.43044 -10.18137 -10.08222 -9.72372 -9.04175 -8.93307 -8.80861 -8.33209 -7.96193 -6.43001 -3.95805 0.84884 0.98983 2.48570 2.71637 2.97774 3.01143 3.02947 3.11308 3.45857 3.54446 3.97639 4.01497 4.11097 4.31830 4.38402 4.46385 4.53490 4.62332 4.73227 4.75341 5.10099 5.10329 5.11878 5.25788 5.27556 5.34319 5.51105 5.60685 5.64193 5.68647 5.73890 5.76739 5.78654 5.84339 6.00122 6.26391 6.49104 6.52612 6.84753 7.04517 7.42129 7.94178 7.99667 8.40743 8.52523 8.79190 9.27139 9.60194 10.69065 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002184 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.180861 B =12815.894109 C =14078.514883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 C -0.182 4.182 4 O -0.304 6.304 5 C 0.132 3.868 6 C -0.229 4.229 7 C 0.115 3.885 8 F -0.140 7.140 9 C -0.167 4.167 10 C -0.058 4.058 11 C 0.140 3.860 12 N -0.678 5.678 13 C 0.706 3.294 14 O -0.583 6.583 15 N -0.717 5.717 16 C 0.125 3.875 17 C 0.437 3.563 18 O -0.579 6.579 19 N -0.575 5.575 20 C -0.310 4.310 21 H 0.122 0.878 22 C 0.045 3.955 23 N -0.873 5.873 24 Si 0.879 3.121 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.266 1.266 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.413 0.587 39 H 0.410 0.590 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.375 0.625 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.616 12.236 -23.950 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.239 4.239 4 O -0.218 6.218 5 C 0.084 3.916 6 C -0.249 4.249 7 C 0.094 3.906 8 F -0.118 7.118 9 C -0.187 4.187 10 C -0.078 4.078 11 C 0.044 3.956 12 N -0.326 5.326 13 C 0.406 3.594 14 O -0.461 6.461 15 N -0.374 5.374 16 C -0.003 4.003 17 C 0.223 3.777 18 O -0.463 6.463 19 N -0.213 5.213 20 C -0.439 4.439 21 H 0.139 0.861 22 C -0.159 4.159 23 N -0.512 5.512 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.249 0.751 39 H 0.248 0.752 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.208 0.792 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.557 11.952 -23.719 27.614 hybrid contribution 0.252 -0.583 -0.247 0.681 sum 7.809 11.369 -23.966 27.651 Atomic orbital electron populations 1.21864 0.92057 1.03501 1.03260 1.22501 0.95700 0.92561 0.87120 1.22410 1.02214 0.95855 1.03441 1.86136 1.28342 1.68193 1.39117 1.18352 0.85192 0.95808 0.92280 1.20938 0.95148 1.08569 1.00291 1.17319 0.89413 0.99411 0.84407 1.91491 1.74743 1.93637 1.51954 1.20951 1.02053 1.02240 0.93449 1.20948 0.90303 0.97857 0.98715 1.16812 0.91218 1.01054 0.86530 1.42390 1.45301 1.17645 1.27309 1.15776 0.80752 0.82242 0.80602 1.90923 1.45678 1.40095 1.69375 1.44735 1.52480 1.18253 1.21952 1.20860 1.01046 0.85780 0.92642 1.19613 0.86879 0.85317 0.85869 1.90544 1.49441 1.30413 1.75947 1.42108 1.44381 1.13292 1.21490 1.19437 1.25075 1.03249 0.96133 0.86071 1.25072 0.97096 0.98219 0.95520 1.69614 1.38247 1.32060 1.11311 0.86667 0.80600 0.83346 0.78872 1.19366 1.19977 1.19182 0.91181 0.90405 0.91431 0.90738 0.91139 0.91752 0.90860 0.83832 0.84229 0.82774 0.75123 0.75157 0.89636 0.89584 0.79205 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.56 37.16 0.36 -0.53 16 2 C 0.08 0.54 2.85 -26.73 -0.08 0.46 16 3 C -0.18 -1.03 9.17 37.16 0.34 -0.69 16 4 O -0.30 -2.96 9.34 -19.69 -0.18 -3.14 16 5 C 0.13 1.40 6.62 -39.09 -0.26 1.14 16 6 C -0.23 -2.19 8.22 -39.40 -0.32 -2.52 16 7 C 0.11 1.19 7.30 -39.42 -0.29 0.90 16 8 F -0.14 -1.47 17.26 2.25 0.04 -1.43 16 9 C -0.17 -1.73 10.02 -39.51 -0.40 -2.13 16 10 C -0.06 -0.68 8.66 -39.43 -0.34 -1.02 16 11 C 0.14 1.69 6.29 -83.44 -0.52 1.16 16 12 N -0.68 -8.29 5.21 -14.09 -0.07 -8.36 16 13 C 0.71 10.56 8.29 -86.92 -0.72 9.84 16 14 O -0.58 -10.12 14.09 5.28 0.07 -10.05 16 15 N -0.72 -10.98 5.53 -66.42 -0.37 -11.35 16 16 C 0.13 2.08 6.15 -5.20 -0.03 2.05 16 17 C 0.44 9.35 7.85 -10.99 -0.09 9.26 16 18 O -0.58 -14.28 15.24 5.54 0.08 -14.19 16 19 N -0.58 -13.09 5.09 -10.96 -0.06 -13.15 16 20 C -0.31 -8.43 10.16 -14.93 -0.15 -8.59 16 21 H 0.12 3.75 7.39 -52.49 -0.39 3.37 16 22 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 23 N -0.87 -24.70 13.96 55.50 0.77 -23.93 16 24 Si 0.88 18.75 27.74 -169.99 -4.71 14.03 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.47 6.31 -51.93 -0.33 0.14 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.39 6.92 -51.93 -0.36 0.04 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.14 1.08 5.43 -52.49 -0.28 0.80 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.15 1.96 6.45 -52.48 -0.34 1.63 16 38 H 0.41 4.24 8.56 -40.82 -0.35 3.89 16 39 H 0.41 6.17 7.46 -40.82 -0.30 5.87 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 43 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -32.26 368.46 -6.61 -38.87 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -5.14 Total: 16.70 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: -2.60 Total: 10.44 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.28 Total: -56.79 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.03 Total: -27.38 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.71 Total: 14.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.26 -6.61 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350811292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.656 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds