Wall clock time and date at job start Wed Apr 1 2020 00:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46757 * 2 1 4 4 O 1.42898 * 109.47031 * 119.99731 * 2 1 3 5 5 C 1.35985 * 116.99855 * 155.04746 * 4 2 1 6 6 C 1.38534 * 120.06940 * 5.39816 * 5 4 2 7 7 C 1.38434 * 119.99488 * 179.97438 * 6 5 4 8 8 F 1.35097 * 119.93913 * 179.97438 * 7 6 5 9 9 C 1.38467 * 120.12082 * 359.97438 * 7 6 5 10 10 C 1.38213 * 120.13701 * 359.97438 * 9 7 6 11 11 C 1.38681 * 120.00997 * 0.02562 * 10 9 7 12 12 N 1.40281 * 120.06484 * 180.27518 * 11 10 9 13 13 C 1.34779 * 119.99822 * 326.23472 * 12 11 10 14 14 O 1.21596 * 119.99914 * 354.18015 * 13 12 11 15 15 N 1.34771 * 120.00078 * 174.18933 * 13 12 11 16 16 C 1.46501 * 120.00175 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47297 * 179.97438 * 16 15 13 18 18 O 1.21297 * 119.99856 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00206 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00443 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99623 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00286 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99908 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99967 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.46784 * 89.99811 * 24 22 20 26 26 H 1.48492 * 109.46956 * 209.99778 * 24 22 20 27 27 H 1.48500 * 109.46975 * 330.00037 * 24 22 20 28 28 H 1.08991 * 109.47438 * 300.00029 * 1 2 3 29 29 H 1.08999 * 109.47015 * 60.00444 * 1 2 3 30 30 H 1.08999 * 109.46715 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47639 * 240.00036 * 2 1 3 32 32 H 1.09000 * 109.46623 * 60.00024 * 3 2 1 33 33 H 1.09000 * 109.47337 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47053 * 300.00109 * 3 2 1 35 35 H 1.08002 * 120.00242 * 359.95289 * 6 5 4 36 36 H 1.07997 * 119.93129 * 180.02562 * 9 7 6 37 37 H 1.08006 * 119.99389 * 180.02562 * 10 9 7 38 38 H 0.96996 * 120.00257 * 146.23381 * 12 11 10 39 39 H 0.96999 * 120.00421 * 359.97438 * 15 13 12 40 40 H 1.09001 * 109.46865 * 299.99821 * 16 15 13 41 41 H 1.08996 * 109.47333 * 59.99607 * 16 15 13 42 42 H 0.96996 * 120.00079 * 0.02562 * 19 17 16 43 43 H 0.96996 * 120.00027 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2478 -1.2242 1.0982 6 6 4.0351 -1.0235 -0.0239 7 6 5.2989 -1.5843 -0.0919 8 9 6.0655 -1.3884 -1.1870 9 6 5.7788 -2.3458 0.9604 10 6 4.9982 -2.5484 2.0828 11 6 3.7313 -1.9892 2.1568 12 7 2.9403 -2.1894 3.2979 13 6 3.0163 -3.3522 3.9750 14 8 3.6890 -4.2666 3.5393 15 7 2.3464 -3.5017 5.1349 16 6 2.4295 -4.7655 5.8712 17 6 1.5966 -4.6729 7.1237 18 8 0.9933 -3.6514 7.3766 19 7 1.5220 -5.7249 7.9627 20 6 0.7647 -5.6406 9.1024 21 1 0.2276 -4.7311 9.3277 22 6 0.6882 -6.7251 9.9677 23 7 -0.0381 -6.6443 11.0598 24 14 1.6179 -8.2979 9.5784 25 1 2.9747 -8.2321 10.1781 26 1 0.8835 -9.4592 10.1416 27 1 1.7343 -8.4525 8.1061 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6765 1.9563 0.8900 33 1 3.1299 1.4427 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 3.6627 -0.4299 -0.8458 36 1 6.7653 -2.7815 0.9042 37 1 5.3749 -3.1424 2.9024 38 1 2.3387 -1.4909 3.5997 39 1 1.8099 -2.7722 5.4827 40 1 2.0560 -5.5759 5.2452 41 1 3.4675 -4.9623 6.1393 42 1 2.0047 -6.5416 7.7606 43 1 -0.0912 -7.4012 11.6641 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350811292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:54 Heat of formation + Delta-G solvation = -139.048367 kcal Electronic energy + Delta-G solvation = -28511.393976 eV Core-core repulsion = 24084.994296 eV Total energy + Delta-G solvation = -4426.399680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.92684 -42.01496 -40.97322 -40.18122 -38.56976 -36.30882 -35.75060 -35.36702 -34.06880 -33.82416 -31.45573 -30.39896 -28.81876 -28.15844 -26.23299 -24.89263 -23.58845 -22.29776 -21.75205 -21.46932 -20.59853 -19.94555 -19.51140 -18.61372 -17.84517 -17.43339 -17.07038 -16.92590 -16.74049 -16.69323 -16.37657 -16.22154 -15.76142 -15.61815 -15.57459 -15.34742 -14.90241 -14.42150 -14.32254 -14.28117 -14.01232 -13.90125 -13.78225 -13.59411 -13.13078 -12.99536 -12.95220 -12.71916 -12.49484 -12.43664 -11.99466 -11.89282 -11.63713 -11.57085 -11.52430 -11.23682 -10.65247 -10.33861 -10.23759 -9.75988 -8.84513 -8.44718 -6.06768 -0.00786 0.18849 1.32046 1.35249 1.38510 1.45852 1.79204 1.92790 2.03205 2.21516 2.57335 2.74728 3.11608 3.13220 3.19970 3.64348 3.80794 3.90900 3.96626 4.00037 4.02131 4.15064 4.27997 4.42098 4.44951 4.57443 4.70303 4.78451 4.85778 4.88593 4.91377 5.01742 5.12691 5.22466 5.24990 5.28315 5.38237 5.49132 5.69775 5.80717 5.89161 6.30301 6.49467 6.78917 6.83622 7.28217 7.37080 7.79052 8.71670 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002184 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.180861 B =12815.894109 C =14078.514883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 C -0.178 4.178 4 O -0.316 6.316 5 C 0.135 3.865 6 C -0.223 4.223 7 C 0.113 3.887 8 F -0.139 7.139 9 C -0.167 4.167 10 C -0.067 4.067 11 C 0.117 3.883 12 N -0.668 5.668 13 C 0.709 3.291 14 O -0.606 6.606 15 N -0.719 5.719 16 C 0.138 3.862 17 C 0.445 3.555 18 O -0.615 6.615 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.063 0.937 22 C -0.009 4.009 23 N -0.926 5.926 24 Si 0.959 3.041 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.231 1.231 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.143 0.857 38 H 0.421 0.579 39 H 0.411 0.589 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.392 0.608 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.099 11.616 -26.714 30.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 C -0.235 4.235 4 O -0.230 6.230 5 C 0.086 3.914 6 C -0.243 4.243 7 C 0.092 3.908 8 F -0.118 7.118 9 C -0.187 4.187 10 C -0.087 4.087 11 C 0.021 3.979 12 N -0.316 5.316 13 C 0.410 3.590 14 O -0.485 6.485 15 N -0.376 5.376 16 C 0.010 3.990 17 C 0.233 3.767 18 O -0.501 6.501 19 N -0.217 5.217 20 C -0.460 4.460 21 H 0.081 0.919 22 C -0.209 4.209 23 N -0.566 5.566 24 Si 0.779 3.221 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.154 1.154 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.183 0.817 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.258 0.742 39 H 0.249 0.751 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.228 0.772 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.044 11.373 -26.526 30.245 hybrid contribution -0.267 -0.192 0.528 0.622 sum 8.777 11.181 -25.998 29.630 Atomic orbital electron populations 1.21894 0.91366 1.03124 1.04149 1.22791 0.96276 0.93149 0.86491 1.22390 1.01904 0.95032 1.04206 1.86139 1.27870 1.68304 1.40675 1.18339 0.85669 0.95327 0.92022 1.21128 0.94639 1.08088 1.00432 1.17412 0.89672 0.99345 0.84331 1.91495 1.74785 1.93619 1.51897 1.21094 1.02614 1.02049 0.92916 1.20896 0.90651 0.98184 0.99001 1.17026 0.91563 1.02345 0.86961 1.42229 1.45231 1.16979 1.27155 1.15759 0.80301 0.82636 0.80343 1.90906 1.46647 1.41096 1.69901 1.44680 1.52847 1.17896 1.22214 1.20760 1.01042 0.86956 0.90273 1.20500 0.85659 0.84060 0.86494 1.90534 1.50670 1.31844 1.77018 1.41908 1.44605 1.14588 1.20643 1.19021 1.26394 1.01947 0.98595 0.91862 1.26076 0.97780 1.02358 0.94664 1.69779 1.40246 1.33756 1.12821 0.85444 0.78915 0.76948 0.80820 1.18063 1.19967 1.15446 0.91686 0.88148 0.92417 0.89846 0.91692 0.92152 0.88818 0.81730 0.82598 0.83918 0.74183 0.75076 0.87744 0.87350 0.77161 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.56 71.98 0.69 -0.82 16 2 C 0.07 0.81 2.85 30.60 0.09 0.90 16 3 C -0.18 -1.64 9.17 71.98 0.66 -0.98 16 4 O -0.32 -5.73 9.34 -93.38 -0.87 -6.61 16 5 C 0.13 2.68 6.62 22.59 0.15 2.83 16 6 C -0.22 -3.82 8.22 22.39 0.18 -3.63 16 7 C 0.11 2.12 7.30 22.37 0.16 2.28 16 8 F -0.14 -2.64 17.26 44.97 0.78 -1.86 16 9 C -0.17 -3.23 10.02 22.32 0.22 -3.00 16 10 C -0.07 -1.53 8.66 22.37 0.19 -1.33 16 11 C 0.12 2.71 6.29 38.14 0.24 2.95 16 12 N -0.67 -15.83 5.21 -316.73 -1.65 -17.48 16 13 C 0.71 20.45 8.29 179.06 1.48 21.94 16 14 O -0.61 -20.24 14.09 -4.02 -0.06 -20.30 16 15 N -0.72 -21.25 5.53 -482.30 -2.67 -23.92 16 16 C 0.14 4.31 6.15 85.63 0.53 4.84 16 17 C 0.45 18.88 7.85 87.66 0.69 19.57 16 18 O -0.61 -31.02 15.24 -3.08 -0.05 -31.07 16 19 N -0.58 -25.99 5.09 -306.99 -1.56 -27.55 16 20 C -0.33 -18.54 10.16 84.04 0.85 -17.68 16 21 H 0.06 4.20 7.39 -2.91 -0.02 4.18 16 22 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 23 N -0.93 -54.09 13.96 21.66 0.30 -53.79 16 24 Si 0.96 37.62 27.74 68.60 1.90 39.52 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.23 -7.68 6.52 99.48 0.65 -7.04 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.85 6.31 -2.39 -0.02 0.83 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.61 6.92 -2.39 -0.02 0.59 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.17 2.03 5.43 -2.91 -0.02 2.02 16 36 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.14 3.59 6.45 -2.91 -0.02 3.57 16 38 H 0.42 8.43 8.56 -92.71 -0.79 7.64 16 39 H 0.41 12.21 7.46 -92.71 -0.69 11.52 16 40 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 42 H 0.39 14.74 5.76 -92.71 -0.53 14.20 16 43 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -72.80 368.46 1.76 -71.04 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: -0.97 Total: 44.17 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: 6.61 Total: 27.84 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.58 Total: -122.75 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -0.98 Total: -57.97 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 1.90 Total: 39.52 kcal Total: -72.80 1.76 -71.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350811292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.007 kcal (2) G-P(sol) polarization free energy of solvation -72.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds