Wall clock time and date at job start Wed Apr 1 2020 00:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.49586 * 2 1 4 4 C 1.53238 * 109.49365 * 239.94429 * 2 1 3 5 5 N 1.47081 * 108.52397 * 186.21333 * 4 2 1 6 6 S 1.65599 * 120.88033 * 231.18737 * 5 4 2 7 7 O 1.42098 * 104.27829 * 333.92721 * 6 5 4 8 8 O 1.42102 * 104.27687 * 206.07063 * 6 5 4 9 9 C 1.81397 * 104.45116 * 89.99609 * 6 5 4 10 10 C 1.53000 * 109.47563 * 179.97438 * 9 6 5 11 11 C 1.50695 * 109.47423 * 180.02562 * 10 9 6 12 12 H 1.07995 * 119.99864 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99928 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99998 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99891 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47368 * 89.99878 * 15 13 11 17 17 H 1.48497 * 109.46991 * 209.99784 * 15 13 11 18 18 H 1.48506 * 109.47156 * 329.99794 * 15 13 11 19 19 C 1.47083 * 118.23769 * 51.45488 * 5 4 2 20 20 C 1.53700 * 108.27308 * 308.48643 * 19 5 4 21 21 N 1.46899 * 109.25727 * 54.08567 * 20 19 5 22 22 C 1.39173 * 110.99813 * 172.60595 * 21 20 19 23 23 C 1.39475 * 120.86401 * 59.79192 * 22 21 20 24 24 C 1.37896 * 119.06343 * 179.73365 * 23 22 21 25 25 N 1.31998 * 120.83932 * 0.54702 * 24 23 22 26 26 C 1.31987 * 121.91307 * 359.72596 * 25 24 23 27 27 C 1.37892 * 120.84381 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47359 * 185.97724 * 1 2 3 29 29 H 1.08997 * 109.47099 * 305.97727 * 1 2 3 30 30 H 1.09000 * 109.46919 * 65.97435 * 1 2 3 31 31 H 1.09002 * 109.63133 * 66.49818 * 4 2 1 32 32 H 1.09007 * 109.62806 * 305.92300 * 4 2 1 33 33 H 1.09001 * 109.46804 * 60.00006 * 9 6 5 34 34 H 1.08997 * 109.47593 * 300.00069 * 9 6 5 35 35 H 1.09001 * 109.47082 * 59.99714 * 10 9 6 36 36 H 1.08997 * 109.46859 * 300.00686 * 10 9 6 37 37 H 0.96993 * 119.99826 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.62550 * 68.25294 * 19 5 4 39 39 H 1.09000 * 109.62684 * 188.83632 * 19 5 4 40 40 H 1.08995 * 109.64902 * 294.07661 * 20 19 5 41 41 H 1.09000 * 109.43966 * 173.96070 * 20 19 5 42 42 H 1.07994 * 120.46709 * 359.96593 * 23 22 21 43 43 H 1.08001 * 119.57991 * 180.25057 * 24 23 22 44 44 H 1.08006 * 119.57920 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.46819 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2503 5 7 3.5042 -0.8430 -1.1555 6 16 4.4792 -0.3585 -2.4033 7 8 3.6577 -0.4776 -3.5566 8 8 5.6536 -1.1448 -2.2560 9 6 4.8324 1.3855 -2.0509 10 6 5.7368 1.9542 -3.1460 11 6 6.0307 3.4029 -2.8529 12 1 5.6144 3.8710 -1.9732 13 6 6.8311 4.1306 -3.7078 14 7 7.3385 3.5604 -4.7788 15 14 7.1960 5.9262 -3.3440 16 1 8.4223 6.0235 -2.5123 17 1 7.4039 6.6573 -4.6197 18 1 6.0518 6.5252 -2.6110 19 6 4.0779 -1.4099 0.0745 20 6 3.4866 -0.6538 1.2750 21 7 2.0202 -0.6941 1.1983 22 6 1.4459 -0.1657 2.3507 23 6 1.6961 1.1513 2.7356 24 6 1.1032 1.6385 3.8814 25 7 0.3173 0.8725 4.6148 26 6 0.0605 -0.3800 4.2872 27 6 0.6094 -0.9410 3.1534 28 1 -0.3634 -1.0220 0.1070 29 1 -0.3633 0.6037 0.8316 30 1 -0.3633 0.4184 -0.9386 31 1 1.7776 -0.1499 -2.1389 32 1 1.5957 -1.7167 -1.3066 33 1 5.3345 1.4669 -1.0868 34 1 3.8985 1.9469 -2.0226 35 1 5.2351 1.8728 -4.1103 36 1 6.6706 1.3928 -3.1739 37 1 7.9018 4.0722 -5.3800 38 1 3.8242 -2.4677 0.1430 39 1 5.1612 -1.2902 0.0622 40 1 3.8235 0.3826 1.2574 41 1 3.8156 -1.1276 2.1998 42 1 2.3421 1.7818 2.1428 43 1 1.2880 2.6584 4.1850 44 1 -0.5886 -0.9728 4.9147 45 1 0.3947 -1.9664 2.8908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882621075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:24 Heat of formation + Delta-G solvation = -23.117498 kcal Electronic energy + Delta-G solvation = -28006.999012 eV Core-core repulsion = 24151.839647 eV Total energy + Delta-G solvation = -3855.159365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03603 -38.98821 -36.74910 -35.59739 -35.23828 -33.94830 -32.98179 -31.57623 -31.21990 -31.02188 -27.93219 -26.09217 -25.63639 -23.82506 -23.04742 -22.71299 -21.64979 -20.24595 -18.69650 -17.97534 -17.25138 -16.62031 -16.47915 -16.26824 -15.96033 -15.80430 -15.54015 -14.85468 -14.66625 -14.57338 -14.53154 -14.03627 -13.95122 -13.65116 -13.46773 -12.87482 -12.59963 -12.43676 -12.31969 -12.26713 -12.08434 -11.82425 -11.76573 -11.64942 -11.40927 -11.36980 -11.13071 -11.02410 -10.94867 -10.46938 -10.44152 -9.86000 -9.80531 -9.74717 -9.47670 -9.46364 -9.06939 -8.71971 -8.55288 -6.17361 -4.23338 0.65527 0.82358 0.88618 2.88151 3.22071 3.28356 3.28633 3.30878 3.49219 4.16842 4.20990 4.31354 4.38235 4.38759 4.56885 4.68646 4.70993 4.83076 4.85450 4.93848 4.99715 5.01809 5.17774 5.20117 5.22158 5.35334 5.42938 5.47909 5.50037 5.52794 5.55126 5.63362 5.71441 5.77081 5.88379 5.98775 5.99996 6.30245 6.40773 6.48066 6.55294 6.93096 7.23773 7.29752 7.68146 7.75122 8.11858 8.79888 9.41699 10.93631 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.003309 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.935523 B = 8460.281200 C = 9899.194095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.056 0.944 4 C 0.134 3.866 5 N -1.010 6.010 6 S 2.589 3.411 7 O -0.962 6.962 8 O -0.962 6.962 9 C -0.589 4.589 10 C 0.029 3.971 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.129 3.871 20 C 0.043 3.957 21 N -0.499 5.499 22 C 0.146 3.854 23 C -0.205 4.205 24 C 0.108 3.892 25 N -0.492 5.492 26 C 0.102 3.898 27 C -0.151 4.151 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.322 -9.142 15.989 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 H 0.074 0.926 4 C 0.008 3.992 5 N -0.846 5.846 6 S 2.688 3.312 7 O -0.952 6.952 8 O -0.952 6.952 9 C -0.722 4.722 10 C -0.010 4.010 11 C -0.561 4.561 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.727 3.273 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.003 3.997 20 C -0.085 4.085 21 N -0.221 5.221 22 C 0.044 3.956 23 C -0.227 4.227 24 C -0.048 4.048 25 N -0.201 5.201 26 C -0.055 4.055 27 C -0.172 4.172 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.171 0.829 44 H 0.174 0.826 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.434 -9.874 15.785 23.559 hybrid contribution 0.844 2.072 -0.119 2.240 sum -13.590 -7.802 15.666 22.158 Atomic orbital electron populations 1.21853 0.93189 1.03023 1.02500 1.22164 0.96046 0.96182 0.89429 0.92569 1.21497 0.79278 1.01770 0.96655 1.58129 1.15982 1.77762 1.32707 1.05796 0.73446 0.78632 0.73299 1.93539 1.67886 1.86966 1.46810 1.93541 1.48624 1.67505 1.85522 1.30505 1.10346 1.20481 1.10902 1.18958 0.93351 0.97842 0.90876 1.20978 1.31186 0.94487 1.09409 0.92136 1.25069 0.95572 0.98890 0.94909 1.69950 1.32940 1.36920 1.12938 0.86474 0.78756 0.84224 0.77859 1.20432 1.20942 1.19784 1.21534 0.98170 0.98079 0.81868 1.22708 0.85456 1.00485 0.99806 1.59496 1.07235 1.55262 1.00134 1.19089 0.94016 0.91111 0.91428 1.22783 1.02998 0.97144 0.99779 1.22630 0.92035 0.99507 0.90676 1.67721 1.14555 1.06042 1.31800 1.22727 0.96968 0.91376 0.94442 1.22099 0.98076 1.01554 0.95435 0.91246 0.92543 0.91081 0.88408 0.90272 0.86444 0.86460 0.94850 0.94859 0.92468 0.90266 0.88321 0.93206 0.89292 0.84952 0.82857 0.82616 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.78 37.16 0.33 -0.88 16 2 C 0.07 0.67 2.33 -67.59 -0.16 0.52 16 3 H 0.06 0.57 7.71 -51.93 -0.40 0.17 16 4 C 0.13 1.48 5.75 -3.60 -0.02 1.46 16 5 N -1.01 -13.01 3.25 -112.96 -0.37 -13.38 16 6 S 2.59 45.04 5.42 -107.50 -0.58 44.46 16 7 O -0.96 -19.29 16.79 -57.54 -0.97 -20.26 16 8 O -0.96 -19.26 16.78 -57.54 -0.97 -20.22 16 9 C -0.59 -10.87 6.12 37.16 0.23 -10.64 16 10 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 11 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.13 1.40 6.50 -3.36 -0.02 1.37 16 20 C 0.04 0.40 5.27 -3.46 -0.02 0.39 16 21 N -0.50 -4.64 4.47 -162.81 -0.73 -5.36 16 22 C 0.15 1.31 3.09 -83.61 -0.26 1.06 16 23 C -0.21 -1.85 8.82 -39.25 -0.35 -2.20 16 24 C 0.11 0.99 11.17 -17.61 -0.20 0.79 16 25 N -0.49 -4.92 10.36 -13.35 -0.14 -5.06 16 26 C 0.10 0.83 11.17 -17.61 -0.20 0.63 16 27 C -0.15 -1.21 10.06 -39.25 -0.39 -1.60 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 7.28 -51.93 -0.38 0.11 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.10 7.19 -51.93 -0.37 0.73 16 32 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.12 1.94 8.14 -51.92 -0.42 1.51 16 34 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 35 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.07 7.18 -51.93 -0.37 0.70 16 40 H 0.05 0.47 7.46 -51.93 -0.39 0.09 16 41 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.13 1.15 7.34 -52.49 -0.39 0.76 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -34.61 377.43 -10.86 -45.47 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.91 Total: -0.35 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -1.61 Total: -21.46 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.50 Total: -49.23 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.93 Total: -40.48 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.58 Total: 44.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.61 -10.86 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882621075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.353 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds