Wall clock time and date at job start Wed Apr 1 2020 00:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.49586 * 2 1 4 4 C 1.53238 * 109.49365 * 239.94429 * 2 1 3 5 5 N 1.47081 * 108.52397 * 186.21333 * 4 2 1 6 6 S 1.65599 * 120.88033 * 231.18737 * 5 4 2 7 7 O 1.42098 * 104.27829 * 333.92721 * 6 5 4 8 8 O 1.42102 * 104.27687 * 206.07063 * 6 5 4 9 9 C 1.81397 * 104.45116 * 89.99609 * 6 5 4 10 10 C 1.53000 * 109.47563 * 179.97438 * 9 6 5 11 11 C 1.50695 * 109.47423 * 180.02562 * 10 9 6 12 12 H 1.07995 * 119.99864 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99928 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99998 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99891 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47368 * 89.99878 * 15 13 11 17 17 H 1.48497 * 109.46991 * 209.99784 * 15 13 11 18 18 H 1.48506 * 109.47156 * 329.99794 * 15 13 11 19 19 C 1.47083 * 118.23769 * 51.45488 * 5 4 2 20 20 C 1.53700 * 108.27308 * 308.48643 * 19 5 4 21 21 N 1.46899 * 109.25727 * 54.08567 * 20 19 5 22 22 C 1.39173 * 110.99813 * 172.60595 * 21 20 19 23 23 C 1.39475 * 120.86401 * 59.79192 * 22 21 20 24 24 C 1.37896 * 119.06343 * 179.73365 * 23 22 21 25 25 N 1.31998 * 120.83932 * 0.54702 * 24 23 22 26 26 C 1.31987 * 121.91307 * 359.72596 * 25 24 23 27 27 C 1.37892 * 120.84381 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47359 * 185.97724 * 1 2 3 29 29 H 1.08997 * 109.47099 * 305.97727 * 1 2 3 30 30 H 1.09000 * 109.46919 * 65.97435 * 1 2 3 31 31 H 1.09002 * 109.63133 * 66.49818 * 4 2 1 32 32 H 1.09007 * 109.62806 * 305.92300 * 4 2 1 33 33 H 1.09001 * 109.46804 * 60.00006 * 9 6 5 34 34 H 1.08997 * 109.47593 * 300.00069 * 9 6 5 35 35 H 1.09001 * 109.47082 * 59.99714 * 10 9 6 36 36 H 1.08997 * 109.46859 * 300.00686 * 10 9 6 37 37 H 0.96993 * 119.99826 * 180.02562 * 14 13 11 38 38 H 1.08995 * 109.62550 * 68.25294 * 19 5 4 39 39 H 1.09000 * 109.62684 * 188.83632 * 19 5 4 40 40 H 1.08995 * 109.64902 * 294.07661 * 20 19 5 41 41 H 1.09000 * 109.43966 * 173.96070 * 20 19 5 42 42 H 1.07994 * 120.46709 * 359.96593 * 23 22 21 43 43 H 1.08001 * 119.57991 * 180.25057 * 24 23 22 44 44 H 1.08006 * 119.57920 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.46819 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2503 5 7 3.5042 -0.8430 -1.1555 6 16 4.4792 -0.3585 -2.4033 7 8 3.6577 -0.4776 -3.5566 8 8 5.6536 -1.1448 -2.2560 9 6 4.8324 1.3855 -2.0509 10 6 5.7368 1.9542 -3.1460 11 6 6.0307 3.4029 -2.8529 12 1 5.6144 3.8710 -1.9732 13 6 6.8311 4.1306 -3.7078 14 7 7.3385 3.5604 -4.7788 15 14 7.1960 5.9262 -3.3440 16 1 8.4223 6.0235 -2.5123 17 1 7.4039 6.6573 -4.6197 18 1 6.0518 6.5252 -2.6110 19 6 4.0779 -1.4099 0.0745 20 6 3.4866 -0.6538 1.2750 21 7 2.0202 -0.6941 1.1983 22 6 1.4459 -0.1657 2.3507 23 6 1.6961 1.1513 2.7356 24 6 1.1032 1.6385 3.8814 25 7 0.3173 0.8725 4.6148 26 6 0.0605 -0.3800 4.2872 27 6 0.6094 -0.9410 3.1534 28 1 -0.3634 -1.0220 0.1070 29 1 -0.3633 0.6037 0.8316 30 1 -0.3633 0.4184 -0.9386 31 1 1.7776 -0.1499 -2.1389 32 1 1.5957 -1.7167 -1.3066 33 1 5.3345 1.4669 -1.0868 34 1 3.8985 1.9469 -2.0226 35 1 5.2351 1.8728 -4.1103 36 1 6.6706 1.3928 -3.1739 37 1 7.9018 4.0722 -5.3800 38 1 3.8242 -2.4677 0.1430 39 1 5.1612 -1.2902 0.0622 40 1 3.8235 0.3826 1.2574 41 1 3.8156 -1.1276 2.1998 42 1 2.3421 1.7818 2.1428 43 1 1.2880 2.6584 4.1850 44 1 -0.5886 -0.9728 4.9147 45 1 0.3947 -1.9664 2.8908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882621075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:23 Heat of formation + Delta-G solvation = -47.965391 kcal Electronic energy + Delta-G solvation = -28008.076497 eV Core-core repulsion = 24151.839647 eV Total energy + Delta-G solvation = -3856.236850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71944 -39.74187 -38.26987 -37.07347 -36.18857 -35.91142 -33.74399 -33.15197 -32.19698 -31.75963 -28.69398 -27.63879 -26.90419 -24.48357 -23.88612 -23.69068 -23.19522 -21.10444 -19.92301 -19.22630 -18.58302 -17.92563 -17.43746 -17.27504 -17.05326 -16.70000 -16.56931 -16.49430 -15.97808 -15.41130 -15.33944 -15.15050 -14.81263 -14.61488 -14.49496 -14.35310 -13.77364 -13.70725 -13.53703 -13.30174 -13.24466 -13.05221 -12.95704 -12.81974 -12.78203 -12.68387 -12.41178 -12.28053 -12.18406 -12.14073 -11.98181 -11.71167 -11.16409 -10.66794 -10.47305 -10.42905 -10.16833 -10.08921 -9.54923 -8.28135 -6.42331 -0.76858 0.18657 0.25210 1.39324 1.40811 1.51811 1.65959 2.35951 2.55588 2.81789 2.85755 3.05269 3.10634 3.48252 3.60994 3.79272 3.89416 4.00065 4.03553 4.07510 4.12460 4.13817 4.20685 4.23235 4.33778 4.42758 4.54806 4.63647 4.71497 4.77906 4.81898 4.84278 4.90976 4.93175 4.97922 5.08771 5.23355 5.24247 5.25920 5.33580 5.51457 5.65863 5.68442 5.79422 6.03771 6.24197 6.71205 7.05690 7.28036 8.84088 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012570 B = 0.003309 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.935523 B = 8460.281200 C = 9899.194095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.051 0.949 4 C 0.128 3.872 5 N -0.999 5.999 6 S 2.614 3.386 7 O -0.991 6.991 8 O -0.990 6.990 9 C -0.587 4.587 10 C 0.022 3.978 11 C -0.539 4.539 12 H 0.075 0.925 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.972 3.028 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.258 1.258 19 C 0.123 3.877 20 C 0.046 3.954 21 N -0.496 5.496 22 C 0.138 3.862 23 C -0.210 4.210 24 C 0.099 3.901 25 N -0.516 5.516 26 C 0.099 3.901 27 C -0.147 4.147 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.268 0.732 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.166 0.834 44 H 0.181 0.819 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.715 -8.940 18.184 25.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.036 4.036 3 H 0.069 0.931 4 C 0.003 3.997 5 N -0.837 5.837 6 S 2.712 3.288 7 O -0.981 6.981 8 O -0.980 6.980 9 C -0.719 4.719 10 C -0.017 4.017 11 C -0.578 4.578 12 H 0.093 0.907 13 C -0.201 4.201 14 N -0.573 5.573 15 Si 0.796 3.204 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.182 1.182 19 C -0.002 4.002 20 C -0.082 4.082 21 N -0.218 5.218 22 C 0.035 3.965 23 C -0.232 4.232 24 C -0.057 4.057 25 N -0.225 5.225 26 C -0.058 4.058 27 C -0.168 4.168 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.151 0.849 43 H 0.183 0.817 44 H 0.198 0.802 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.830 -9.661 17.992 25.839 hybrid contribution 1.213 1.911 -0.746 2.383 sum -14.617 -7.750 17.246 23.899 Atomic orbital electron populations 1.21804 0.91950 1.03441 1.02741 1.22127 0.96954 0.95637 0.88902 0.93061 1.21728 0.77747 1.02784 0.97485 1.57738 1.16422 1.77129 1.32457 1.04769 0.72929 0.77696 0.73416 1.93494 1.68468 1.87080 1.49058 1.93497 1.50470 1.67909 1.86165 1.30396 1.10106 1.21932 1.09444 1.18802 0.93292 0.97565 0.92032 1.21492 1.30927 0.95601 1.09735 0.90728 1.26105 0.95402 1.04005 0.94631 1.70096 1.33981 1.38988 1.14245 0.85335 0.79124 0.78143 0.77805 1.19578 1.20831 1.18169 1.21776 0.98229 0.98962 0.81192 1.22697 0.85594 1.00346 0.99573 1.59500 1.07085 1.55106 1.00130 1.19171 0.94503 0.91315 0.91464 1.22813 1.03201 0.97334 0.99887 1.22866 0.91971 1.00161 0.90718 1.67751 1.15242 1.07023 1.32513 1.23154 0.96869 0.91013 0.94718 1.22258 0.97365 1.02114 0.95017 0.90585 0.92842 0.90430 0.88752 0.88984 0.84313 0.84425 0.97576 0.97568 0.92355 0.88939 0.88528 0.93331 0.87692 0.84907 0.81672 0.80240 0.82686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.78 71.98 0.63 -1.36 16 2 C 0.07 1.24 2.33 44.99 0.10 1.34 16 3 H 0.05 0.94 7.71 -2.39 -0.02 0.92 16 4 C 0.13 2.61 5.75 86.35 0.50 3.10 16 5 N -1.00 -24.40 3.25 -511.31 -1.66 -26.06 16 6 S 2.61 91.06 5.42 -56.49 -0.31 90.75 16 7 O -0.99 -40.22 16.79 -127.65 -2.14 -42.36 16 8 O -0.99 -40.09 16.78 -127.65 -2.14 -42.23 16 9 C -0.59 -21.55 6.12 71.98 0.44 -21.11 16 10 C 0.02 1.13 4.98 29.85 0.15 1.28 16 11 C -0.54 -29.43 9.11 25.60 0.23 -29.20 16 12 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 13 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 14 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 15 Si 0.97 42.75 29.54 68.60 2.03 44.78 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 19 C 0.12 2.43 6.50 86.50 0.56 3.00 16 20 C 0.05 0.75 5.27 86.54 0.46 1.20 16 21 N -0.50 -7.99 4.47 -669.02 -2.99 -10.98 16 22 C 0.14 2.16 3.09 38.57 0.12 2.28 16 23 C -0.21 -3.43 8.82 22.49 0.20 -3.23 16 24 C 0.10 1.65 11.17 84.59 0.95 2.60 16 25 N -0.52 -9.41 10.36 -196.16 -2.03 -11.44 16 26 C 0.10 1.38 11.17 84.59 0.94 2.32 16 27 C -0.15 -1.96 10.06 22.49 0.23 -1.73 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.81 7.28 -2.39 -0.02 0.79 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 2.01 7.19 -2.39 -0.02 2.00 16 32 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 34 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.97 7.18 -2.39 -0.02 1.96 16 40 H 0.05 0.82 7.46 -2.39 -0.02 0.80 16 41 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 42 H 0.13 2.09 7.34 -2.91 -0.02 2.07 16 43 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -75.30 377.43 -2.02 -77.33 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.97 Total: 15.52 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: 5.97 Total: -39.21 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -6.40 Total: -104.58 kcal Atomic # 8 Polarization: -80.30 SS G_CDS: -4.29 Total: -84.59 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 91.06 SS G_CDS: -0.31 Total: 90.75 kcal Total: -75.30 -2.02 -77.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882621075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.363 kcal (2) G-P(sol) polarization free energy of solvation -75.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds