Wall clock time and date at job start Wed Apr 1 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.62758 * 2 1 4 4 C 1.53239 * 109.62745 * 239.60445 * 2 1 3 5 5 N 1.46900 * 109.33570 * 186.46340 * 4 2 1 6 6 C 1.39169 * 110.99703 * 187.25582 * 5 4 2 7 7 C 1.39479 * 120.86704 * 179.97438 * 6 5 4 8 8 C 1.37889 * 119.06726 * 179.97438 * 7 6 5 9 9 N 1.31998 * 120.84532 * 359.97335 * 8 7 6 10 10 C 1.31998 * 121.91141 * 0.02562 * 9 8 7 11 11 C 1.37898 * 120.83767 * 0.02562 * 10 9 8 12 12 C 1.46899 * 111.27241 * 63.11044 * 5 4 2 13 13 C 1.53239 * 109.33534 * 296.89274 * 12 5 4 14 14 N 1.47079 * 108.52105 * 53.82948 * 13 12 5 15 15 S 1.65602 * 120.88023 * 128.83761 * 14 13 12 16 16 O 1.42108 * 104.27671 * 18.48435 * 15 14 13 17 17 O 1.42097 * 104.27984 * 146.33887 * 15 14 13 18 18 C 1.81400 * 104.44966 * 262.41403 * 15 14 13 19 19 C 1.53003 * 109.47016 * 179.97438 * 18 15 14 20 20 C 1.50699 * 109.46626 * 179.97438 * 19 18 15 21 21 H 1.07997 * 120.00298 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99776 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99750 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00047 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47166 * 60.00641 * 24 22 20 26 26 H 1.48500 * 109.47503 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47376 * 300.00597 * 24 22 20 28 28 H 1.08998 * 109.47564 * 192.92278 * 1 2 3 29 29 H 1.09007 * 109.47195 * 312.91997 * 1 2 3 30 30 H 1.09004 * 109.47084 * 72.91851 * 1 2 3 31 31 H 1.08998 * 109.48999 * 66.50368 * 4 2 1 32 32 H 1.08997 * 109.49751 * 306.42214 * 4 2 1 33 33 H 1.08002 * 120.46299 * 359.97438 * 7 6 5 34 34 H 1.08003 * 119.57618 * 180.02562 * 8 7 6 35 35 H 1.07992 * 119.57830 * 179.97438 * 10 9 8 36 36 H 1.07997 * 120.45975 * 180.02562 * 11 10 9 37 37 H 1.08994 * 109.49434 * 56.84874 * 12 5 4 38 38 H 1.08994 * 109.49334 * 176.93500 * 12 5 4 39 39 H 1.09000 * 109.62797 * 294.11730 * 13 12 5 40 40 H 1.09000 * 109.62870 * 173.53997 * 13 12 5 41 41 H 1.08996 * 109.46904 * 300.00075 * 18 15 14 42 42 H 1.08998 * 109.47058 * 59.99974 * 18 15 14 43 43 H 1.08994 * 109.47033 * 299.99601 * 19 18 15 44 44 H 1.08998 * 109.47105 * 60.00153 * 19 18 15 45 45 H 0.97003 * 119.99681 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0447 -0.7303 -1.2450 5 7 3.5054 -0.8626 -1.1621 6 6 4.0278 -1.3739 -2.3464 7 6 5.3991 -1.5830 -2.4922 8 6 5.8764 -2.0919 -3.6815 9 7 5.0540 -2.3802 -4.6729 10 6 3.7506 -2.1967 -4.5740 11 6 3.1936 -1.6908 -3.4184 12 6 3.9015 -1.6872 -0.0128 13 6 3.4628 -0.9962 1.2827 14 7 2.0240 -0.7048 1.1927 15 16 0.9877 -1.1577 2.4024 16 8 1.8336 -1.3856 3.5214 17 8 0.0047 -0.1319 2.4242 18 6 0.2673 -2.7177 1.8209 19 6 -0.7193 -3.2443 2.8651 20 6 -1.3182 -4.5399 2.3816 21 1 -1.0242 -4.9472 1.4256 22 6 -2.2406 -5.2060 3.1605 23 7 -2.5982 -4.7102 4.3250 24 14 -2.9825 -6.8123 2.5616 25 1 -1.9019 -7.8095 2.3538 26 1 -3.9402 -7.3235 3.5749 27 1 -3.6956 -6.5807 1.2797 28 1 -0.3634 -1.0016 0.2298 29 1 -0.3634 0.6999 0.7526 30 1 -0.3633 0.3019 -0.9824 31 1 1.7810 -0.1604 -2.1359 32 1 1.5923 -1.7205 -1.2990 33 1 6.0774 -1.3496 -1.6848 34 1 6.9367 -2.2574 -3.8031 35 1 3.1124 -2.4452 -5.4090 36 1 2.1264 -1.5435 -3.3440 37 1 3.4232 -2.6640 -0.0839 38 1 4.9844 -1.8113 -0.0101 39 1 4.0176 -0.0663 1.4077 40 1 3.6507 -1.6547 2.1307 41 1 -0.2554 -2.5479 0.8797 42 1 1.0604 -3.4498 1.6691 43 1 -0.1961 -3.4143 3.8060 44 1 -1.5124 -2.5123 3.0173 45 1 -3.2475 -5.1786 4.8727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885845013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:56 Heat of formation + Delta-G solvation = -12.260129 kcal Electronic energy + Delta-G solvation = -28170.256141 eV Core-core repulsion = 24315.567587 eV Total energy + Delta-G solvation = -3854.688554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.01010 -39.03490 -36.99277 -35.80365 -35.38315 -33.99389 -32.88484 -31.49616 -31.23200 -30.93240 -27.86476 -26.44883 -25.65126 -24.02182 -22.91115 -22.23942 -21.69617 -20.62186 -18.67023 -17.99075 -17.20465 -16.82735 -16.45199 -16.39285 -16.04709 -15.53410 -15.16224 -14.79064 -14.68662 -14.66969 -14.57539 -14.48599 -13.97869 -13.69687 -13.60881 -12.98756 -12.69460 -12.50031 -12.26391 -12.16042 -12.01251 -11.80792 -11.65843 -11.54392 -11.42853 -11.23128 -11.08987 -10.93986 -10.73712 -10.49604 -10.40462 -10.37133 -9.83448 -9.74209 -9.45248 -9.41186 -8.93954 -8.55469 -8.50969 -6.17835 -4.23935 0.64343 0.89539 1.00658 2.83786 3.20926 3.22877 3.28239 3.29641 3.60917 4.16368 4.23272 4.27303 4.33792 4.38006 4.45765 4.64053 4.71090 4.80311 4.85787 4.94831 4.97615 5.04380 5.15282 5.16954 5.21254 5.27314 5.31583 5.47529 5.50835 5.52617 5.57052 5.62065 5.71303 5.71994 5.95363 5.98546 6.28264 6.37006 6.46803 6.52880 6.55271 6.77967 7.22753 7.28537 7.74450 7.78214 8.11106 8.79052 9.41159 10.93065 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003376 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.241670 B = 8290.797618 C = 9620.190456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.164 3.836 3 H 0.086 0.914 4 C 0.036 3.964 5 N -0.483 5.483 6 C 0.159 3.841 7 C -0.198 4.198 8 C 0.119 3.881 9 N -0.510 5.510 10 C 0.123 3.877 11 C -0.227 4.227 12 C 0.043 3.957 13 C 0.124 3.876 14 N -1.007 6.007 15 S 2.591 3.409 16 O -0.965 6.965 17 O -0.957 6.957 18 C -0.593 4.593 19 C 0.030 3.970 20 C -0.522 4.522 21 H 0.060 0.940 22 C 0.059 3.941 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.033 0.967 44 H 0.034 0.966 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.044 8.480 -14.302 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.058 3.942 3 H 0.104 0.896 4 C -0.092 4.092 5 N -0.197 5.197 6 C 0.052 3.948 7 C -0.221 4.221 8 C -0.037 4.037 9 N -0.221 5.221 10 C -0.033 4.033 11 C -0.250 4.250 12 C -0.084 4.084 13 C -0.002 4.002 14 N -0.844 5.844 15 S 2.691 3.309 16 O -0.955 6.955 17 O -0.948 6.948 18 C -0.726 4.726 19 C -0.009 4.009 20 C -0.562 4.562 21 H 0.078 0.922 22 C -0.144 4.144 23 N -0.527 5.527 24 Si 0.727 3.273 25 H -0.201 1.201 26 H -0.210 1.210 27 H -0.201 1.201 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.157 0.843 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.318 9.137 -13.918 21.959 hybrid contribution -1.083 -1.696 -0.173 2.019 sum 13.235 7.441 -14.091 20.714 Atomic orbital electron populations 1.22886 0.92578 1.05287 1.05363 1.20952 0.94422 0.96160 0.82695 0.89596 1.22895 0.85252 1.01365 0.99698 1.58662 1.12135 1.47119 1.01819 1.19297 0.93657 0.90593 0.91216 1.21801 0.94161 1.05477 1.00643 1.22604 0.99747 0.93142 0.88233 1.67731 1.04632 1.18325 1.31393 1.22602 0.91329 0.93166 0.96251 1.22327 1.01210 1.05438 0.96063 1.22735 1.01877 0.94653 0.89144 1.21495 0.80610 1.01351 0.96699 1.58245 1.17750 1.72195 1.36170 1.05752 0.73905 0.77820 0.73464 1.93522 1.66181 1.87286 1.48550 1.93531 1.60886 1.54509 1.85857 1.30664 1.11661 1.18451 1.11840 1.18946 0.92365 0.97915 0.91662 1.20940 1.24494 1.05994 1.04731 0.92189 1.25061 0.96383 0.98095 0.94846 1.69942 1.32408 1.39405 1.10989 0.86537 0.79051 0.83176 0.78556 1.20077 1.20995 1.20056 0.91841 0.86554 0.90551 0.88722 0.92276 0.84576 0.82752 0.82837 0.84348 0.92573 0.88653 0.90284 0.87753 0.86128 0.86485 0.94921 0.94809 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.37 7.75 37.16 0.29 -2.09 16 2 C 0.16 1.80 3.61 -67.49 -0.24 1.55 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.04 0.34 3.58 -3.70 -0.01 0.32 16 5 N -0.48 -4.61 4.67 -170.63 -0.80 -5.41 16 6 C 0.16 1.53 5.66 -83.61 -0.47 1.05 16 7 C -0.20 -1.71 9.23 -39.25 -0.36 -2.07 16 8 C 0.12 1.06 11.17 -17.61 -0.20 0.86 16 9 N -0.51 -5.42 10.36 -13.35 -0.14 -5.56 16 10 C 0.12 1.15 11.17 -17.60 -0.20 0.95 16 11 C -0.23 -2.07 8.89 -39.24 -0.35 -2.42 16 12 C 0.04 0.39 5.43 -3.70 -0.02 0.37 16 13 C 0.12 1.33 6.51 -3.60 -0.02 1.31 16 14 N -1.01 -12.92 3.25 -106.20 -0.35 -13.26 16 15 S 2.59 44.62 4.80 -107.50 -0.52 44.10 16 16 O -0.96 -19.26 16.55 -57.54 -0.95 -20.21 16 17 O -0.96 -18.29 14.07 -57.54 -0.81 -19.10 16 18 C -0.59 -10.93 5.82 37.16 0.22 -10.71 16 19 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 20 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 24 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.06 0.81 4.68 -51.93 -0.24 0.57 16 29 H 0.12 1.61 6.00 -51.93 -0.31 1.29 16 30 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.09 0.73 6.93 -51.93 -0.36 0.37 16 32 H 0.06 0.57 7.85 -51.93 -0.41 0.16 16 33 H 0.14 0.93 7.23 -52.49 -0.38 0.55 16 34 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 1.06 5.96 -52.49 -0.31 0.74 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.69 6.73 -51.93 -0.35 0.34 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.14 6.97 -51.93 -0.36 0.78 16 41 H 0.12 1.99 5.94 -51.93 -0.31 1.68 16 42 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 43 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 363.63 15.07 5.48 5.48 Total: -1.00 -34.31 363.63 -10.67 -44.98 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.38 Total: 1.58 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -1.92 Total: -23.15 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.54 Total: -49.54 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -1.76 Total: -39.31 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 44.62 SS G_CDS: -0.52 Total: 44.10 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.31 -10.67 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885845013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.718 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds