Wall clock time and date at job start Wed Apr 1 2020 00:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00305 * 2 1 4 4 C 1.50694 * 109.47072 * 179.97438 * 3 2 1 5 5 N 1.30944 * 122.90656 * 90.02327 * 4 3 2 6 6 C 1.29436 * 117.36611 * 179.97438 * 5 4 3 7 7 S 1.70955 * 110.38585 * 359.97438 * 6 5 4 8 8 C 1.35668 * 122.90443 * 269.72939 * 4 3 2 9 9 C 1.46681 * 126.12676 * 359.97438 * 8 4 3 10 10 O 1.21686 * 120.00348 * 359.97438 * 9 8 4 11 11 N 1.34774 * 119.99813 * 180.02562 * 9 8 4 12 12 C 1.46501 * 119.99968 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.45921 * 324.96751 * 12 11 9 14 14 C 1.53038 * 109.46140 * 84.93230 * 12 11 9 15 15 C 1.53185 * 109.31617 * 181.38456 * 14 12 11 16 16 N 1.46932 * 108.77556 * 305.36819 * 15 14 12 17 17 C 1.36938 * 120.62539 * 233.62764 * 16 15 14 18 18 H 1.08009 * 119.99605 * 150.86050 * 17 16 15 19 19 C 1.38808 * 120.00288 * 330.86091 * 17 16 15 20 20 N 1.31620 * 119.99849 * 160.75795 * 19 17 16 21 21 Si 1.86799 * 120.00000 * 340.75829 * 19 17 16 22 22 H 1.48494 * 109.47088 * 92.25865 * 21 19 17 23 23 H 1.48499 * 109.47160 * 212.25745 * 21 19 17 24 24 H 1.48503 * 109.46885 * 332.25669 * 21 19 17 25 25 C 1.46924 * 118.74092 * 53.60513 * 16 15 14 26 26 H 1.08999 * 109.58898 * 66.17812 * 25 16 15 27 27 C 1.52998 * 109.58446 * 186.60927 * 25 16 15 28 28 C 1.53046 * 109.45909 * 204.99848 * 12 11 9 29 29 H 1.08997 * 109.47263 * 300.00492 * 1 2 3 30 30 H 1.09002 * 109.47515 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46751 * 60.00681 * 1 2 3 32 32 H 1.09001 * 109.46544 * 299.99517 * 3 2 1 33 33 H 1.08994 * 109.47143 * 59.98948 * 3 2 1 34 34 H 1.07994 * 124.80427 * 179.97438 * 6 5 4 35 35 H 0.97003 * 120.00128 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.49899 * 301.33740 * 14 12 11 37 37 H 1.09002 * 109.49513 * 61.43050 * 14 12 11 38 38 H 1.08998 * 109.58870 * 185.57808 * 15 14 12 39 39 H 1.09000 * 109.70149 * 65.21630 * 15 14 12 40 40 H 0.97001 * 119.99787 * 179.97438 * 20 19 17 41 41 H 1.09009 * 109.46715 * 179.29008 * 27 25 16 42 42 H 1.09001 * 109.47017 * 299.28323 * 27 25 16 43 43 H 1.08996 * 109.47665 * 59.28811 * 27 25 16 44 44 H 1.08996 * 109.49887 * 298.57036 * 28 12 11 45 45 H 1.09002 * 109.49702 * 58.63017 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2222 1.1304 -1.0984 6 6 5.5064 1.0291 -0.9729 7 16 5.9424 0.9954 0.6798 8 6 4.2472 1.1337 1.1400 9 6 3.7239 1.1824 2.5094 10 8 2.5260 1.2793 2.7000 11 7 4.5700 1.1209 3.5566 12 6 4.0475 1.1701 4.9244 13 1 3.1814 1.8311 4.9587 14 6 3.6329 -0.2363 5.3628 15 6 3.0551 -0.1756 6.7802 16 7 4.0372 0.4671 7.6641 17 6 4.4480 -0.1496 8.8157 18 1 5.4377 0.0383 9.2054 19 6 3.5927 -1.0163 9.4821 20 7 4.0768 -1.8861 10.3431 21 14 1.7545 -0.9480 9.1568 22 1 1.4067 -1.9073 8.0780 23 1 1.0189 -1.3082 10.3956 24 1 1.3765 0.4258 8.7385 25 6 4.5705 1.7836 7.2887 26 1 3.7722 2.5249 7.3243 27 6 5.6864 2.1802 8.2574 28 6 5.1314 1.7008 5.8655 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 1.6887 1.8463 -0.8901 33 1 1.6886 1.8464 0.8898 34 1 6.2037 0.9737 -1.7957 35 1 5.5250 1.0441 3.4048 36 1 2.8778 -0.6230 4.6784 37 1 4.5037 -0.8920 5.3526 38 1 2.8502 -1.1857 7.1348 39 1 2.1324 0.4046 6.7763 40 1 3.4790 -2.4914 10.8091 41 1 6.0891 3.1514 7.9697 42 1 5.2853 2.2386 9.2693 43 1 6.4795 1.4334 8.2235 44 1 5.9880 1.0270 5.8506 45 1 5.4432 2.6928 5.5386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947796608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:12 Heat of formation + Delta-G solvation = -3.946832 kcal Electronic energy + Delta-G solvation = -27766.832241 eV Core-core repulsion = 23912.504179 eV Total energy + Delta-G solvation = -3854.328062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71065 -39.52383 -37.90538 -37.61981 -34.83646 -32.47377 -32.01426 -31.47093 -30.27408 -28.25623 -26.64687 -26.30997 -24.81111 -24.68798 -22.80832 -22.19032 -20.49529 -20.06333 -19.24567 -18.80664 -17.15207 -16.70183 -16.44739 -16.16247 -15.71425 -15.48219 -15.19833 -15.14842 -14.77310 -14.51890 -14.23274 -13.92083 -13.77452 -13.45179 -13.21426 -13.17044 -12.56882 -12.45249 -11.99118 -11.86312 -11.77546 -11.49659 -11.38978 -11.19299 -11.07375 -10.63255 -10.45357 -10.35248 -10.22631 -10.11898 -10.01922 -9.89459 -9.80369 -9.58198 -9.42966 -9.36488 -8.91717 -8.61083 -6.95991 -5.93915 -3.32029 -0.11642 0.80633 1.17998 2.06440 2.93550 3.03533 3.35295 3.50819 3.53974 3.60536 4.07602 4.54544 4.57698 4.64313 4.79012 4.86188 5.10474 5.13689 5.24899 5.26447 5.33219 5.36658 5.42046 5.57853 5.58279 5.68910 5.72800 5.94468 5.97921 6.05191 6.17757 6.22374 6.33255 6.37235 6.47114 6.58268 6.66465 6.76773 6.92874 6.97833 7.02765 7.20436 7.40875 7.97601 8.05645 8.35375 8.94070 9.73266 10.10374 11.21611 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014944 B = 0.003194 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.235771 B = 8763.314093 C =10007.925242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.128 3.872 4 C 0.136 3.864 5 N -0.463 5.463 6 C 0.031 3.969 7 S 0.174 5.826 8 C -0.265 4.265 9 C 0.593 3.407 10 O -0.516 6.516 11 N -0.715 5.715 12 C 0.152 3.848 13 H 0.086 0.914 14 C -0.141 4.141 15 C 0.130 3.870 16 N -0.603 5.603 17 C -0.260 4.260 18 H 0.092 0.908 19 C 0.025 3.975 20 N -0.910 5.910 21 Si 0.880 3.120 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.176 3.824 26 H 0.032 0.968 27 C -0.136 4.136 28 C -0.137 4.137 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.208 0.792 35 H 0.394 0.606 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 8.537 -22.503 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.298 6.298 3 C 0.049 3.951 4 C -0.002 4.002 5 N -0.176 5.176 6 C -0.265 4.265 7 S 0.429 5.571 8 C -0.390 4.390 9 C 0.377 3.623 10 O -0.393 6.393 11 N -0.365 5.365 12 C 0.049 3.951 13 H 0.105 0.895 14 C -0.182 4.182 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.388 4.388 18 H 0.109 0.891 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.069 3.931 26 H 0.050 0.950 27 C -0.193 4.193 28 C -0.177 4.177 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.225 0.775 35 H 0.228 0.772 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.181 8.256 -22.223 23.919 hybrid contribution -1.522 0.009 -0.470 1.593 sum 1.659 8.265 -22.693 24.208 Atomic orbital electron populations 1.22733 0.80349 1.02883 1.00135 1.87890 1.20073 1.26333 1.95511 1.21028 0.85068 0.86348 1.02609 1.20246 0.97239 0.97489 0.85254 1.66033 1.04959 1.15492 1.31139 1.28703 0.95187 1.02179 1.00420 1.83980 1.05339 1.64341 1.03462 1.25752 0.96630 1.17152 0.99480 1.16659 0.86349 0.77052 0.82247 1.90801 1.14306 1.49521 1.84685 1.46202 1.09636 1.74116 1.06583 1.21086 0.97588 0.98296 0.78158 0.89547 1.22406 1.01382 0.95735 0.98647 1.21315 0.91719 0.98109 0.88506 1.44499 1.49409 1.15975 1.22832 1.18921 0.98624 1.21862 0.99385 0.89054 1.25308 0.97621 0.97847 0.96598 1.69816 1.34691 1.20619 1.30140 0.86995 0.87744 0.78375 0.75832 1.21598 1.23211 1.19502 1.20364 0.94455 0.87643 0.90635 0.95000 1.21801 0.98321 0.98983 1.00226 1.22409 0.98016 1.00209 0.97019 0.93431 0.89532 0.94189 0.91902 0.88806 0.77544 0.77164 0.92204 0.91522 0.90636 0.95471 0.92798 0.94054 0.91544 0.92277 0.91211 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.38 10.69 -35.23 -0.38 -5.75 16 3 C 0.13 1.65 5.76 36.00 0.21 1.86 16 4 C 0.14 1.76 6.42 -83.89 -0.54 1.22 16 5 N -0.46 -5.35 10.50 -11.53 -0.12 -5.47 16 6 C 0.03 0.25 12.22 51.75 0.63 0.88 16 7 S 0.17 1.41 22.35 -107.50 -2.40 -1.00 16 8 C -0.27 -3.29 6.48 -37.09 -0.24 -3.53 16 9 C 0.59 8.63 7.74 -12.85 -0.10 8.53 16 10 O -0.52 -8.99 13.92 5.20 0.07 -8.91 16 11 N -0.72 -9.52 5.07 -55.07 -0.28 -9.80 16 12 C 0.15 2.40 2.42 -67.89 -0.16 2.23 16 13 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 14 C -0.14 -2.60 5.65 -26.62 -0.15 -2.75 16 15 C 0.13 2.84 4.20 -3.71 -0.02 2.83 16 16 N -0.60 -13.79 2.75 -164.78 -0.45 -14.24 16 17 C -0.26 -6.96 9.05 -15.06 -0.14 -7.10 16 18 H 0.09 2.56 6.39 -52.48 -0.34 2.23 16 19 C 0.03 0.72 5.24 -17.43 -0.09 0.62 16 20 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 21 Si 0.88 22.47 24.34 -169.99 -4.14 18.33 16 22 H -0.29 -7.20 6.62 56.52 0.37 -6.83 16 23 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 24 H -0.27 -6.80 6.63 56.52 0.37 -6.42 16 25 C 0.18 3.27 3.50 -67.60 -0.24 3.04 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 C -0.14 -2.36 7.94 37.16 0.30 -2.06 16 28 C -0.14 -2.06 4.84 -26.61 -0.13 -2.19 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.28 5.99 -51.93 -0.31 0.97 16 34 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.39 4.25 7.79 -40.82 -0.32 3.93 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.82 4.62 -51.93 -0.24 1.58 16 39 H 0.03 0.61 7.02 -51.93 -0.36 0.24 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 42 H 0.07 1.27 7.66 -51.93 -0.40 0.87 16 43 H 0.06 1.07 7.40 -51.93 -0.38 0.69 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -33.58 368.65 -7.50 -41.08 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.58 Total: 1.91 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 0.45 Total: 5.07 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.08 Total: -56.28 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.30 Total: -14.67 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.40 Total: -1.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.58 -7.50 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947796608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.137 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds