Wall clock time and date at job start Wed Apr 1 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00437 * 2 1 4 4 C 1.50697 * 109.47144 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.80332 * 90.02611 * 4 3 2 6 6 C 1.30939 * 117.36772 * 179.97438 * 5 4 3 7 7 C 1.35662 * 114.18738 * 0.26941 * 6 5 4 8 8 C 1.46687 * 126.13064 * 179.70919 * 7 6 5 9 9 O 1.21685 * 119.99517 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00124 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99675 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46145 * 324.96760 * 11 10 8 13 13 C 1.53039 * 109.46069 * 84.93497 * 11 10 8 14 14 C 1.53199 * 109.31211 * 181.38408 * 13 11 10 15 15 N 1.46924 * 108.77405 * 305.36199 * 14 13 11 16 16 C 1.36936 * 120.63031 * 233.62997 * 15 14 13 17 17 H 1.08000 * 119.99905 * 150.86493 * 16 15 14 18 18 C 1.38813 * 120.00259 * 330.86597 * 16 15 14 19 19 N 1.31609 * 120.00517 * 160.75664 * 18 16 15 20 20 Si 1.86803 * 119.99494 * 340.75299 * 18 16 15 21 21 H 1.48498 * 109.46898 * 92.25973 * 20 18 16 22 22 H 1.48499 * 109.47206 * 212.25653 * 20 18 16 23 23 H 1.48499 * 109.47292 * 332.26025 * 20 18 16 24 24 C 1.46933 * 118.73907 * 53.60819 * 15 14 13 25 25 H 1.08998 * 109.58553 * 66.18158 * 24 15 14 26 26 C 1.53001 * 109.58317 * 186.60215 * 24 15 14 27 27 C 1.53044 * 109.45707 * 205.00011 * 11 10 8 28 28 S 1.70956 * 124.80870 * 269.98553 * 4 3 2 29 29 H 1.09001 * 109.46574 * 60.00135 * 1 2 3 30 30 H 1.09000 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47167 * 299.99899 * 1 2 3 32 32 H 1.09001 * 109.46910 * 60.00290 * 3 2 1 33 33 H 1.08994 * 109.47244 * 299.99938 * 3 2 1 34 34 H 1.07994 * 122.90627 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00451 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.49770 * 301.33130 * 13 11 10 37 37 H 1.08998 * 109.49968 * 61.43365 * 13 11 10 38 38 H 1.09000 * 109.58522 * 185.57583 * 14 13 11 39 39 H 1.09000 * 109.70125 * 65.21398 * 14 13 11 40 40 H 0.96993 * 120.00463 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.46821 * 179.28369 * 26 24 15 42 42 H 1.08992 * 109.47494 * 299.28773 * 26 24 15 43 43 H 1.09002 * 109.46985 * 59.29435 * 26 24 15 44 44 H 1.09002 * 109.49573 * 298.56543 * 27 11 10 45 45 H 1.08997 * 109.49965 * 58.62557 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2495 1.1282 -1.0619 6 6 5.5438 1.0261 -0.8919 7 6 5.9326 0.9895 0.4073 8 6 7.3113 0.8732 0.8946 9 8 8.2322 0.7997 0.1027 10 7 7.5579 0.8478 2.2193 11 6 8.9349 0.7323 2.7059 12 1 9.5065 0.0956 2.0305 13 6 9.5747 2.1214 2.7605 14 6 11.0251 1.9929 3.2366 15 7 11.0405 1.2708 4.5161 16 6 11.6642 1.8057 5.6116 17 1 11.3117 1.5665 6.6040 18 6 12.7495 2.6553 5.4466 19 7 13.1117 3.4579 6.4247 20 14 13.6960 2.6594 3.8361 21 1 13.1284 3.6909 2.9310 22 1 15.1243 2.9661 4.1021 23 1 13.5875 1.3244 3.1948 24 6 10.3737 -0.0359 4.5979 25 1 10.9001 -0.7547 3.9701 26 6 10.3732 -0.5214 6.0488 27 6 8.9306 0.1154 4.1065 28 16 4.4849 1.1098 1.4047 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6888 1.8463 0.8900 33 1 1.6888 1.8463 -0.8899 34 1 6.2411 0.9715 -1.7147 35 1 6.8238 0.9061 2.8506 36 1 9.5563 2.5697 1.7671 37 1 9.0183 2.7512 3.4547 38 1 11.4545 2.9856 3.3721 39 1 11.6066 1.4407 2.4984 40 1 13.8702 4.0514 6.3095 41 1 9.8669 -1.4848 6.1094 42 1 11.4007 -0.6284 6.3965 43 1 9.8515 0.2030 6.6743 44 1 8.3803 0.7641 4.7880 45 1 8.4532 -0.8638 4.0713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948085844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:26 Heat of formation + Delta-G solvation = -6.893429 kcal Electronic energy + Delta-G solvation = -26877.379742 eV Core-core repulsion = 23022.923906 eV Total energy + Delta-G solvation = -3854.455836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.49524 -39.60935 -38.31317 -37.84801 -34.83262 -32.50800 -32.15247 -31.57699 -30.29380 -28.74249 -26.78059 -26.53104 -24.94282 -24.23461 -22.80070 -22.23173 -20.51001 -20.18766 -19.36372 -18.79064 -17.23219 -17.13271 -16.50299 -16.37267 -15.98676 -15.69550 -15.28014 -15.18686 -14.75382 -14.53543 -14.22551 -14.00772 -13.78416 -13.44127 -13.22932 -13.18516 -12.90108 -12.53356 -12.02402 -12.00597 -11.92713 -11.86140 -11.38703 -11.19753 -11.08321 -10.63585 -10.50598 -10.40193 -10.27950 -10.22734 -10.09368 -10.02184 -9.87623 -9.72616 -9.43988 -9.38807 -8.93472 -8.61265 -6.95985 -5.93889 -3.31941 -0.18338 0.74652 1.17798 2.07914 2.97962 3.00317 3.20050 3.35059 3.51011 3.54404 3.82878 4.34287 4.54462 4.58641 4.72494 4.76837 4.81683 4.85833 4.87582 4.96250 5.11659 5.16413 5.25825 5.36751 5.57749 5.70902 5.72564 5.94329 5.96312 6.05068 6.17974 6.22444 6.33080 6.37224 6.43603 6.46405 6.57347 6.65459 6.76077 6.93129 7.03111 7.19315 7.39544 7.97520 8.03913 8.35343 8.94055 9.73230 10.10437 11.21571 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.002373 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.578444 B =11796.230535 C =12331.340167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.138 3.862 4 C 0.045 3.955 5 N -0.459 5.459 6 C 0.114 3.886 7 C -0.280 4.280 8 C 0.592 3.408 9 O -0.522 6.522 10 N -0.716 5.716 11 C 0.151 3.849 12 H 0.087 0.913 13 C -0.141 4.141 14 C 0.129 3.871 15 N -0.602 5.602 16 C -0.259 4.259 17 H 0.092 0.908 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.880 3.120 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.176 3.824 25 H 0.033 0.967 26 C -0.136 4.136 27 C -0.137 4.137 28 S 0.196 5.804 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.192 0.808 35 H 0.395 0.605 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.028 0.972 40 H 0.262 0.738 41 H 0.041 0.959 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.241 -5.750 -10.201 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.058 3.942 4 C -0.230 4.230 5 N -0.174 5.174 6 C -0.044 4.044 7 C -0.404 4.404 8 C 0.376 3.624 9 O -0.399 6.399 10 N -0.366 5.366 11 C 0.048 3.952 12 H 0.105 0.895 13 C -0.182 4.182 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.387 4.387 17 H 0.109 0.891 18 C -0.175 4.175 19 N -0.552 5.552 20 Si 0.711 3.289 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.069 3.931 25 H 0.050 0.950 26 C -0.193 4.193 27 C -0.176 4.176 28 S 0.452 5.548 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.208 0.792 35 H 0.228 0.772 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.847 -5.821 -10.066 27.433 hybrid contribution 0.610 0.409 -1.415 1.595 sum -24.237 -5.411 -11.481 27.359 Atomic orbital electron populations 1.22830 0.79717 1.03499 1.00463 1.87967 1.20531 1.26056 1.95554 1.20833 0.84234 0.86298 1.02863 1.26917 1.00641 1.03790 0.91668 1.66159 1.04932 1.15100 1.31224 1.22199 0.90529 0.95942 0.95697 1.26042 0.98478 1.17903 0.97996 1.16712 0.85628 0.77033 0.82990 1.90862 1.44059 1.49825 1.55169 1.46210 1.10540 1.74050 1.05762 1.21099 0.80130 0.98080 0.95922 0.89508 1.22412 0.99110 0.95849 1.00803 1.21322 0.93156 0.97355 0.87870 1.44495 1.63468 1.16266 1.08454 1.18912 1.08306 1.24476 0.86996 0.89057 1.25317 0.97384 0.98146 0.96625 1.69806 1.28793 1.23718 1.32926 0.86994 0.79092 0.78305 0.84529 1.21639 1.23212 1.19495 1.20373 0.89501 0.87642 0.95632 0.94956 1.21798 1.02576 0.98782 0.96160 1.22407 1.00675 0.99907 0.94661 1.83867 0.96516 1.63655 1.10760 0.93488 0.88977 0.93526 0.90504 0.89658 0.79166 0.77156 0.92272 0.91492 0.90609 0.95432 0.92806 0.94041 0.91537 0.92284 0.91208 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.15 10.69 -35.23 -0.38 -3.53 16 3 C 0.14 0.95 6.51 36.00 0.23 1.19 16 4 C 0.04 0.43 7.02 -13.29 -0.09 0.34 16 5 N -0.46 -5.34 10.51 -11.50 -0.12 -5.46 16 6 C 0.11 1.35 11.09 -18.85 -0.21 1.14 16 7 C -0.28 -3.35 6.48 -37.09 -0.24 -3.59 16 8 C 0.59 8.57 7.75 -12.85 -0.10 8.47 16 9 O -0.52 -9.34 16.53 5.20 0.09 -9.25 16 10 N -0.72 -9.55 5.07 -55.07 -0.28 -9.83 16 11 C 0.15 2.40 2.42 -67.89 -0.16 2.24 16 12 H 0.09 1.52 7.58 -51.93 -0.39 1.12 16 13 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 14 C 0.13 2.83 4.20 -3.71 -0.02 2.81 16 15 N -0.60 -13.78 2.75 -164.77 -0.45 -14.23 16 16 C -0.26 -6.92 9.05 -15.06 -0.14 -7.06 16 17 H 0.09 2.56 6.38 -52.49 -0.34 2.23 16 18 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 19 N -0.91 -27.49 13.97 55.49 0.78 -26.72 16 20 Si 0.88 22.49 24.34 -169.99 -4.14 18.35 16 21 H -0.29 -7.20 6.62 56.52 0.37 -6.83 16 22 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 23 H -0.27 -6.82 6.63 56.52 0.37 -6.45 16 24 C 0.18 3.28 3.50 -67.60 -0.24 3.05 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 26 C -0.14 -2.36 7.95 37.16 0.30 -2.07 16 27 C -0.14 -2.08 4.84 -26.61 -0.13 -2.21 16 28 S 0.20 1.75 22.31 -107.50 -2.40 -0.65 16 29 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.19 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.39 4.27 7.79 -40.82 -0.32 3.95 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.82 4.62 -51.93 -0.24 1.58 16 39 H 0.03 0.62 7.02 -51.93 -0.36 0.25 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.28 7.66 -51.93 -0.40 0.88 16 43 H 0.06 1.07 7.40 -51.93 -0.38 0.69 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -33.39 373.61 -7.89 -41.29 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.70 Total: 0.97 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 0.08 Total: 3.43 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.08 Total: -56.24 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.29 Total: -12.78 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.40 Total: -0.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.39 -7.89 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948085844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.392 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds